EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0036451 (Gene tree)
Gene ID: 39613
Gene Symbol: CG9425
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 11155 bases
Position: chr3L:14789935-14801089
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0075443	zf-CCCH	PF00642.24	1.3e-05	1	1
FBpp0305287	zf-CCCH	PF00642.24	1.3e-05	1	1
FBpp0305288	zf-CCCH	PF00642.24	1.3e-05	1	1
FBpp0075443	ResIII	PF04851.15	2e-05	1	1
FBpp0305287	ResIII	PF04851.15	2e-05	1	1
FBpp0305288	ResIII	PF04851.15	2e-05	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0075693	-	8497	-	FBpp0075443	2103 (aa)	-	Q9VUH9
FBtr0333075	-	6734	-	FBpp0305288	2103 (aa)	-	Q9VUH9
FBtr0333074	-	7272	-	FBpp0305287	2103 (aa)	-	H8F4R4

Gene Model

Click here to download FBgn0036451's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0036451's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0036451	CG9425	52	48.094	ENSMODG00000004034	HELZ	53	49.012	Monodelphis_domestica
FBgn0036451	CG9425	58	45.455	MGP_PahariEiJ_G0018467	Helz	59	52.405	Mus_pahari

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005829	cytosol	21873635.	IBA	Component
GO:0035194	posttranscriptional gene silencing by RNA	21873635.	IBA	Process
GO:0043186	P granule	21873635.	IBA	Component
GO:0046872	metal ion binding	-	IEA	Function