EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0036641 (Gene tree)
Gene ID: 39844
Gene Symbol: Smn
Alias: -
Full Name: survival motor neuron
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 1150 bases
Position: chr3L:16580398-16581547
Accession: FBgn0036641
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0075153	SMN	PF06003.12	2e-25	1	2
FBpp0075153	SMN	PF06003.12	2e-25	2	2
FBpp0302954	SMN	PF06003.12	2e-25	1	2
FBpp0302954	SMN	PF06003.12	2e-25	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0329921	-	1086	-	FBpp0302954	226 (aa)	-	Q9VV74
FBtr0075395	-	879	-	FBpp0075153	226 (aa)	-	Q9VV74

Gene Model

Click here to download FBgn0036641's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0036641's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0036641	Smn	99	30.403	ENSELUG00000018067	smn1	94	30.769	Esox_lucius
FBgn0036641	Smn	65	30.769	ENSMGAG00000008889	-	93	31.250	Meleagris_gallopavo

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000387	spliceosomal snRNP assembly	18621711.	IDA	Process
GO:0000387	spliceosomal snRNP assembly	17353360.22813737.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	22813737.23063131.	IMP	Process
GO:0002164	larval development	12783845.	IMP	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	17353360.	IDA	Component
GO:0005737	cytoplasm	16533947.18923150.19464282.21490958.21939654.	IDA	Component
GO:0007274	neuromuscular synaptic transmission	23063130.23063131.	IMP	Process
GO:0007417	central nervous system development	21490958.	IMP	Process
GO:0007528	neuromuscular junction development	12783845.18791638.	IMP	Process
GO:0008345	larval locomotory behavior	12783845.22813737.23063130.23063131.	IMP	Process
GO:0009792	embryo development ending in birth or egg hatching	12783845.	IMP	Process
GO:0015030	Cajal body	16533947.17595295.18791638.18923150.	IDA	Component
GO:0017145	stem cell division	21490958.	IMP	Process
GO:0022618	ribonucleoprotein complex assembly	18923150.	IMP	Process
GO:0030018	Z disc	17353360.	IDA	Component
GO:0030240	skeletal muscle thin filament assembly	17353360.	IMP	Process
GO:0031594	neuromuscular junction	18791638.	IDA	Component
GO:0031674	I band	17353360.	IDA	Component
GO:0032224	positive regulation of synaptic transmission, cholinergic	23063130.23063131.	IMP	Process
GO:0032797	SMN complex	26098872.	IGI	Component
GO:0033962	cytoplasmic mRNA processing body assembly	19464282.	IMP	Process
GO:0034718	SMN-Gemin2 complex	18621711.	IDA	Component
GO:0034730	SmD-containing SMN-Sm protein complex	18621711.	IDA	Component
GO:0035154	terminal cell fate specification, open tracheal system	23029159.	IMP	Process
GO:0045175	basal protein localization	21490958.	IMP	Process
GO:0048601	oocyte morphogenesis	12783845.	IMP	Process
GO:0048863	stem cell differentiation	21490958.	IMP	Process
GO:0051276	chromosome organization	19464282.	IMP	Process
GO:0051393	alpha-actinin binding	17353360.	IPI	Function
GO:0060079	excitatory postsynaptic potential	12783845.23063130.23063131.	IMP	Process
GO:0071254	cytoplasmic U snRNP body	17595295.19464282.21939654.	IDA	Component
GO:0072089	stem cell proliferation	21490958.	IMP	Process
GO:0072553	terminal button organization	12783845.	IMP	Process
GO:0097113	AMPA glutamate receptor clustering	12783845.	IMP	Process
GO:0097504	Gemini of coiled bodies	19464282.	IDA	Component
GO:1990194	cytoplasmic U snRNP body assembly	19464282.	IMP	Process