EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0036733 (Gene tree)
Gene ID: 39955
Gene Symbol: U4-U6-60K
Alias: -
Full Name: U4-U6 small nuclear riboprotein factor 60K
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 2058 bases
Position: chr3L:17511855-17513912
Accession: FBgn0036733
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0074971	PRP4	PF08799.11	2.5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0075209	-	2058	-	FBpp0074971	553 (aa)	-	Q9VVI0

Gene Model

Click here to download FBgn0036733's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0036733's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0036733	U4-U6-60K	53	30.102	FBgn0034274	CG10931	86	30.102

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0036733	U4-U6-60K	99	50.547	ENSG00000136875	PRPF4	87	56.674	Homo_sapiens
FBgn0036733	U4-U6-60K	99	49.715	ENSAPOG00000014132	prpf4	99	49.905	Acanthochromis_polyacanthus
FBgn0036733	U4-U6-60K	99	50.547	ENSAMEG00000013048	PRPF4	85	56.674	Ailuropoda_melanoleuca
FBgn0036733	U4-U6-60K	99	50.364	ENSACIG00000005579	prpf4	99	50.182	Amphilophus_citrinellus
FBgn0036733	U4-U6-60K	99	49.909	ENSAOCG00000005457	prpf4	99	50.091	Amphiprion_ocellaris
FBgn0036733	U4-U6-60K	99	49.909	ENSAPEG00000000776	prpf4	99	50.091	Amphiprion_percula
FBgn0036733	U4-U6-60K	99	50.272	ENSATEG00000023013	prpf4	99	49.909	Anabas_testudineus
FBgn0036733	U4-U6-60K	97	51.391	ENSAPLG00000006534	PRPF4	85	56.957	Anas_platyrhynchos
FBgn0036733	U4-U6-60K	97	50.560	ENSACAG00000015110	PRPF4	86	56.637	Anolis_carolinensis
FBgn0036733	U4-U6-60K	99	50.547	ENSANAG00000022464	PRPF4	84	56.674	Aotus_nancymaae
FBgn0036733	U4-U6-60K	99	50.272	ENSACLG00000019031	prpf4	99	50.091	Astatotilapia_calliptera
FBgn0036733	U4-U6-60K	99	40.885	ENSAMXG00000006756	prpf4	99	47.091	Astyanax_mexicanus
FBgn0036733	U4-U6-60K	99	50.547	ENSBTAG00000004571	PRPF4	87	56.674	Bos_taurus
FBgn0036733	U4-U6-60K	87	43.064	WBGene00007972	prp-4	95	43.064	Caenorhabditis_elegans
FBgn0036733	U4-U6-60K	99	50.547	ENSCJAG00000017856	PRPF4	87	56.674	Callithrix_jacchus
FBgn0036733	U4-U6-60K	99	50.547	ENSCAFG00000003224	PRPF4	85	56.674	Canis_familiaris
FBgn0036733	U4-U6-60K	99	50.547	ENSCAFG00020022637	PRPF4	87	56.674	Canis_lupus_dingo
FBgn0036733	U4-U6-60K	99	50.547	ENSCHIG00000024648	-	87	56.674	Capra_hircus
FBgn0036733	U4-U6-60K	99	50.547	ENSTSYG00000010366	PRPF4	87	56.674	Carlito_syrichta
FBgn0036733	U4-U6-60K	82	54.684	ENSCAPG00000008935	PRPF4	91	54.430	Cavia_aperea
FBgn0036733	U4-U6-60K	99	50.000	ENSCPOG00000010747	-	87	56.018	Cavia_porcellus
FBgn0036733	U4-U6-60K	99	47.263	ENSCPOG00000014729	-	87	53.173	Cavia_porcellus
FBgn0036733	U4-U6-60K	99	50.730	ENSCCAG00000028990	PRPF4	87	56.893	Cebus_capucinus
FBgn0036733	U4-U6-60K	99	50.547	ENSCATG00000021552	PRPF4	87	56.674	Cercocebus_atys
FBgn0036733	U4-U6-60K	99	50.547	ENSCLAG00000013448	PRPF4	87	56.674	Chinchilla_lanigera
FBgn0036733	U4-U6-60K	81	56.541	ENSCHOG00000007233	PRPF4	99	56.319	Choloepus_hoffmanni
FBgn0036733	U4-U6-60K	99	50.454	ENSCPBG00000019136	PRPF4	65	56.893	Chrysemys_picta_bellii
FBgn0036733	U4-U6-60K	83	54.881	ENSCING00000001299	-	90	54.881	Ciona_intestinalis
FBgn0036733	U4-U6-60K	82	53.145	ENSCSAVG00000009178	-	99	52.052	Ciona_savignyi
FBgn0036733	U4-U6-60K	99	50.547	ENSCANG00000003246	PRPF4	87	56.674	Colobus_angolensis_palliatus
FBgn0036733	U4-U6-60K	99	50.547	ENSCGRG00001016992	Prpf4	87	56.674	Cricetulus_griseus_chok1gshd
FBgn0036733	U4-U6-60K	99	50.547	ENSCGRG00000017560	Prpf4	87	56.674	Cricetulus_griseus_crigri
FBgn0036733	U4-U6-60K	99	50.000	ENSCSEG00000020451	prpf4	99	49.002	Cynoglossus_semilaevis
FBgn0036733	U4-U6-60K	99	50.909	ENSDARG00000067639	prpf4	99	50.727	Danio_rerio
FBgn0036733	U4-U6-60K	99	50.730	ENSDNOG00000013203	PRPF4	87	56.893	Dasypus_novemcinctus
FBgn0036733	U4-U6-60K	99	50.365	ENSDORG00000026275	Prpf4	87	56.455	Dipodomys_ordii
FBgn0036733	U4-U6-60K	99	50.454	ENSETEG00000020389	PRPF4	87	56.522	Echinops_telfairi
FBgn0036733	U4-U6-60K	99	50.407	ENSEBUG00000015229	prpf4	89	49.796	Eptatretus_burgeri
FBgn0036733	U4-U6-60K	99	50.547	ENSEASG00005022678	PRPF4	87	56.674	Equus_asinus_asinus
FBgn0036733	U4-U6-60K	99	50.547	ENSECAG00000007072	PRPF4	87	56.674	Equus_caballus
FBgn0036733	U4-U6-60K	62	60.996	ENSEEUG00000007480	PRPF4	78	48.883	Erinaceus_europaeus
FBgn0036733	U4-U6-60K	99	50.364	ENSELUG00000007510	prpf4	99	49.636	Esox_lucius
FBgn0036733	U4-U6-60K	99	50.547	ENSFCAG00000005514	PRPF4	87	56.674	Felis_catus
FBgn0036733	U4-U6-60K	97	51.363	ENSFALG00000005423	PRPF4	76	57.789	Ficedula_albicollis
FBgn0036733	U4-U6-60K	99	50.182	ENSFDAG00000005839	PRPF4	87	56.236	Fukomys_damarensis
FBgn0036733	U4-U6-60K	99	49.909	ENSFHEG00000001300	prpf4	99	50.091	Fundulus_heteroclitus
FBgn0036733	U4-U6-60K	99	50.814	ENSGALG00000008857	PRPF4	85	56.957	Gallus_gallus
FBgn0036733	U4-U6-60K	94	45.161	ENSGAFG00000012164	prpf4	75	44.533	Gambusia_affinis
FBgn0036733	U4-U6-60K	99	47.177	ENSGACG00000015476	prpf4	99	46.812	Gasterosteus_aculeatus
FBgn0036733	U4-U6-60K	99	50.635	ENSGAGG00000025029	PRPF4	84	56.893	Gopherus_agassizii
FBgn0036733	U4-U6-60K	99	50.547	ENSGGOG00000006943	PRPF4	87	56.674	Gorilla_gorilla
FBgn0036733	U4-U6-60K	99	50.454	ENSHBUG00000000562	prpf4	100	49.715	Haplochromis_burtoni
FBgn0036733	U4-U6-60K	82	48.253	ENSHGLG00000016628	-	88	48.253	Heterocephalus_glaber_female
FBgn0036733	U4-U6-60K	99	50.547	ENSHGLG00000015191	PRPF4	87	56.674	Heterocephalus_glaber_female
FBgn0036733	U4-U6-60K	99	39.781	ENSHGLG00000003838	-	99	42.000	Heterocephalus_glaber_female
FBgn0036733	U4-U6-60K	99	39.781	ENSHGLG00100005571	-	99	42.000	Heterocephalus_glaber_male
FBgn0036733	U4-U6-60K	99	50.814	ENSIPUG00000017956	PRPF4	100	50.452	Ictalurus_punctatus
FBgn0036733	U4-U6-60K	99	50.547	ENSSTOG00000027833	PRPF4	87	56.674	Ictidomys_tridecemlineatus
FBgn0036733	U4-U6-60K	99	50.365	ENSJJAG00000008838	Prpf4	87	56.455	Jaculus_jaculus
FBgn0036733	U4-U6-60K	99	49.909	ENSKMAG00000013236	prpf4	99	49.728	Kryptolebias_marmoratus
FBgn0036733	U4-U6-60K	99	49.002	ENSLBEG00000020611	prpf4	99	49.546	Labrus_bergylta
FBgn0036733	U4-U6-60K	99	49.548	ENSLACG00000016317	PRPF4	97	49.367	Latimeria_chalumnae
FBgn0036733	U4-U6-60K	82	56.798	ENSLOCG00000000581	prpf4	99	50.545	Lepisosteus_oculatus
FBgn0036733	U4-U6-60K	99	50.547	ENSLAFG00000018225	PRPF4	87	56.674	Loxodonta_africana
FBgn0036733	U4-U6-60K	99	50.365	ENSMFAG00000039397	PRPF4	87	56.455	Macaca_fascicularis
FBgn0036733	U4-U6-60K	99	50.547	ENSMMUG00000005844	PRPF4	87	56.674	Macaca_mulatta
FBgn0036733	U4-U6-60K	99	45.055	ENSMNEG00000033737	PRPF4	86	50.769	Macaca_nemestrina
FBgn0036733	U4-U6-60K	99	50.547	ENSMLEG00000040284	PRPF4	87	56.674	Mandrillus_leucophaeus
FBgn0036733	U4-U6-60K	99	50.091	ENSMAMG00000020141	prpf4	99	49.728	Mastacembelus_armatus
FBgn0036733	U4-U6-60K	99	50.272	ENSMZEG00005023205	prpf4	99	50.091	Maylandia_zebra
FBgn0036733	U4-U6-60K	82	57.582	ENSMGAG00000001796	PRPF4	85	57.174	Meleagris_gallopavo
FBgn0036733	U4-U6-60K	99	50.365	ENSMAUG00000018022	Prpf4	87	56.455	Mesocricetus_auratus
FBgn0036733	U4-U6-60K	99	50.000	ENSMICG00000015022	PRPF4	87	56.018	Microcebus_murinus
FBgn0036733	U4-U6-60K	99	50.730	ENSMOCG00000018273	Prpf4	87	56.893	Microtus_ochrogaster
FBgn0036733	U4-U6-60K	99	49.728	ENSMMOG00000021177	prpf4	99	49.365	Mola_mola
FBgn0036733	U4-U6-60K	82	56.018	ENSMODG00000004444	-	87	55.799	Monodelphis_domestica
FBgn0036733	U4-U6-60K	82	56.455	ENSMODG00000025096	-	84	56.236	Monodelphis_domestica
FBgn0036733	U4-U6-60K	99	50.091	ENSMALG00000013624	prpf4	99	49.909	Monopterus_albus
FBgn0036733	U4-U6-60K	99	50.547	MGP_CAROLIEiJ_G0026078	Prpf4	87	56.674	Mus_caroli
FBgn0036733	U4-U6-60K	99	50.547	ENSMUSG00000066148	Prpf4	87	56.674	Mus_musculus
FBgn0036733	U4-U6-60K	99	50.547	MGP_PahariEiJ_G0028413	Prpf4	87	56.674	Mus_pahari
FBgn0036733	U4-U6-60K	99	50.547	MGP_SPRETEiJ_G0027042	Prpf4	87	56.674	Mus_spretus
FBgn0036733	U4-U6-60K	99	50.547	ENSMPUG00000007883	PRPF4	87	56.674	Mustela_putorius_furo
FBgn0036733	U4-U6-60K	99	49.818	ENSMLUG00000008626	-	85	56.018	Myotis_lucifugus
FBgn0036733	U4-U6-60K	99	50.182	ENSMLUG00000015309	-	85	56.236	Myotis_lucifugus
FBgn0036733	U4-U6-60K	99	47.263	ENSNGAG00000000468	Prpf4	86	52.735	Nannospalax_galili
FBgn0036733	U4-U6-60K	99	50.272	ENSNBRG00000007972	prpf4	99	50.091	Neolamprologus_brichardi
FBgn0036733	U4-U6-60K	99	50.547	ENSNLEG00000016647	PRPF4	87	56.674	Nomascus_leucogenys
FBgn0036733	U4-U6-60K	99	49.818	ENSMEUG00000013256	PRPF4	88	56.236	Notamacropus_eugenii
FBgn0036733	U4-U6-60K	99	50.547	ENSOPRG00000005302	PRPF4	87	56.674	Ochotona_princeps
FBgn0036733	U4-U6-60K	99	50.365	ENSODEG00000018147	PRPF4	87	56.455	Octodon_degus
FBgn0036733	U4-U6-60K	99	50.454	ENSONIG00000012671	prpf4	99	50.454	Oreochromis_niloticus
FBgn0036733	U4-U6-60K	99	50.547	ENSOCUG00000005046	PRPF4	87	56.674	Oryctolagus_cuniculus
FBgn0036733	U4-U6-60K	99	50.635	ENSORLG00000019641	prpf4	99	50.091	Oryzias_latipes
FBgn0036733	U4-U6-60K	99	50.635	ENSORLG00020019438	prpf4	99	50.091	Oryzias_latipes_hni
FBgn0036733	U4-U6-60K	99	50.635	ENSOMEG00000020941	prpf4	100	49.526	Oryzias_melastigma
FBgn0036733	U4-U6-60K	99	47.993	ENSOGAG00000007802	PRPF4	85	53.611	Otolemur_garnettii
FBgn0036733	U4-U6-60K	99	50.547	ENSOARG00000006319	PRPF4	84	56.674	Ovis_aries
FBgn0036733	U4-U6-60K	99	50.547	ENSPPAG00000041797	PRPF4	87	56.674	Pan_paniscus
FBgn0036733	U4-U6-60K	99	50.547	ENSPPRG00000014360	PRPF4	87	56.674	Panthera_pardus
FBgn0036733	U4-U6-60K	99	50.547	ENSPTIG00000009574	PRPF4	87	56.674	Panthera_tigris_altaica
FBgn0036733	U4-U6-60K	99	50.547	ENSPTRG00000021274	PRPF4	87	56.674	Pan_troglodytes
FBgn0036733	U4-U6-60K	99	50.547	ENSPANG00000025776	PRPF4	84	56.674	Papio_anubis
FBgn0036733	U4-U6-60K	99	52.182	ENSPKIG00000017259	prpf4	99	52.000	Paramormyrops_kingsleyae
FBgn0036733	U4-U6-60K	99	50.817	ENSPSIG00000010713	PRPF4	80	57.330	Pelodiscus_sinensis
FBgn0036733	U4-U6-60K	99	41.103	ENSPMGG00000000997	prpf4	97	39.609	Periophthalmus_magnuspinnatus
FBgn0036733	U4-U6-60K	99	50.547	ENSPEMG00000024115	Prpf4	87	56.674	Peromyscus_maniculatus_bairdii
FBgn0036733	U4-U6-60K	99	49.818	ENSPCIG00000003821	PRPF4	88	56.236	Phascolarctos_cinereus
FBgn0036733	U4-U6-60K	99	46.931	ENSPFOG00000013524	prpf4	99	46.499	Poecilia_formosa
FBgn0036733	U4-U6-60K	94	44.118	ENSPLAG00000011620	prpf4	99	41.333	Poecilia_latipinna
FBgn0036733	U4-U6-60K	98	45.953	ENSPMEG00000006813	prpf4	100	45.337	Poecilia_mexicana
FBgn0036733	U4-U6-60K	99	50.365	ENSPCAG00000002561	PRPF4	88	56.455	Procavia_capensis
FBgn0036733	U4-U6-60K	99	50.182	ENSPCOG00000011975	PRPF4	87	56.236	Propithecus_coquereli
FBgn0036733	U4-U6-60K	99	49.088	ENSPVAG00000004708	PRPF4	87	54.923	Pteropus_vampyrus
FBgn0036733	U4-U6-60K	99	50.454	ENSPNYG00000008013	prpf4	99	50.272	Pundamilia_nyererei
FBgn0036733	U4-U6-60K	99	51.718	ENSPNAG00000000697	prpf4	99	51.091	Pygocentrus_nattereri
FBgn0036733	U4-U6-60K	99	50.547	ENSRNOG00000014777	Prpf4	87	56.674	Rattus_norvegicus
FBgn0036733	U4-U6-60K	99	50.547	ENSRBIG00000040221	PRPF4	87	56.674	Rhinopithecus_bieti
FBgn0036733	U4-U6-60K	99	50.547	ENSRROG00000040240	PRPF4	87	56.674	Rhinopithecus_roxellana
FBgn0036733	U4-U6-60K	82	56.455	ENSSHAG00000017658	PRPF4	87	56.236	Sarcophilus_harrisii
FBgn0036733	U4-U6-60K	99	51.273	ENSSFOG00015008963	prpf4	99	50.909	Scleropages_formosus
FBgn0036733	U4-U6-60K	99	50.272	ENSSMAG00000008889	prpf4	99	49.458	Scophthalmus_maximus
FBgn0036733	U4-U6-60K	99	50.379	ENSSDUG00000022083	prpf4	94	50.379	Seriola_dumerili
FBgn0036733	U4-U6-60K	99	49.905	ENSSLDG00000008115	prpf4	94	49.905	Seriola_lalandi_dorsalis
FBgn0036733	U4-U6-60K	99	50.909	ENSSPUG00000015582	PRPF4	87	56.893	Sphenodon_punctatus
FBgn0036733	U4-U6-60K	99	47.292	ENSSPAG00000011286	prpf4	99	47.112	Stegastes_partitus
FBgn0036733	U4-U6-60K	99	50.547	ENSSSCG00000024648	PRPF4	87	56.674	Sus_scrofa
FBgn0036733	U4-U6-60K	86	56.211	ENSTGUG00000002623	PRPF4	96	56.211	Taeniopygia_guttata
FBgn0036733	U4-U6-60K	99	50.091	ENSTRUG00000008853	prpf4	99	49.728	Takifugu_rubripes
FBgn0036733	U4-U6-60K	99	48.276	ENSTNIG00000013250	prpf4	99	49.546	Tetraodon_nigroviridis
FBgn0036733	U4-U6-60K	99	46.715	ENSTBEG00000000821	PRPF4	87	52.079	Tupaia_belangeri
FBgn0036733	U4-U6-60K	81	57.831	ENSTTRG00000003246	PRPF4	84	57.831	Tursiops_truncatus
FBgn0036733	U4-U6-60K	65	42.818	ENSUAMG00000018288	PRPF4	79	50.725	Ursus_americanus
FBgn0036733	U4-U6-60K	99	50.000	ENSUMAG00000019375	PRPF4	87	56.018	Ursus_maritimus
FBgn0036733	U4-U6-60K	99	50.365	ENSVPAG00000005281	PRPF4	87	56.455	Vicugna_pacos
FBgn0036733	U4-U6-60K	99	49.819	ENSVVUG00000002476	PRPF4	90	55.748	Vulpes_vulpes
FBgn0036733	U4-U6-60K	73	45.879	ENSXCOG00000006101	prpf4	92	44.802	Xiphophorus_couchianus
FBgn0036733	U4-U6-60K	99	43.053	ENSXMAG00000002750	prpf4	93	46.154	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0017070	U6 snRNA binding	21873635.	IBA	Function
GO:0017070	U6 snRNA binding	19285445.	IDA	Function
GO:0030532	small nuclear ribonucleoprotein complex	10908584.	ISS	Component
GO:0030621	U4 snRNA binding	21873635.	IBA	Function
GO:0030621	U4 snRNA binding	19285445.	IDA	Function
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component