EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0036828 (Gene tree)
Gene ID: 40064
Gene Symbol: CG6841
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 3603 bases
Position: chr3L:18905372-18908974
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0074835	PRP1_N	PF06424.12	1.8e-56	1	1
FBpp0312391	PRP1_N	PF06424.12	1.8e-56	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0346816	-	3382	-	FBpp0312391	931 (aa)	-	Q8SX58
FBtr0075068	-	3309	-	FBpp0074835	931 (aa)	-	Q9VVU6

Gene Model

Click here to download FBgn0036828's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0036828's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0036828	CG6841	98	72.210	ENSG00000101161	PRPF6	99	71.781	Homo_sapiens
FBgn0036828	CG6841	99	71.922	ENSAPOG00000010395	prpf6	96	71.814	Acanthochromis_polyacanthus
FBgn0036828	CG6841	99	71.383	ENSAMEG00000001916	PRPF6	98	71.078	Ailuropoda_melanoleuca
FBgn0036828	CG6841	99	71.613	ENSACIG00000019862	prpf6	96	71.505	Amphilophus_citrinellus
FBgn0036828	CG6841	99	71.613	ENSAOCG00000012988	prpf6	96	71.505	Amphiprion_ocellaris
FBgn0036828	CG6841	98	66.703	ENSAPEG00000008301	prpf6	99	66.595	Amphiprion_percula
FBgn0036828	CG6841	99	71.505	ENSATEG00000005581	prpf6	96	71.398	Anabas_testudineus
FBgn0036828	CG6841	98	72.543	ENSACAG00000006464	PRPF6	96	71.595	Anolis_carolinensis
FBgn0036828	CG6841	98	72.425	ENSANAG00000012661	PRPF6	99	71.996	Aotus_nancymaae
FBgn0036828	CG6841	99	71.828	ENSACLG00000025875	prpf6	96	71.720	Astatotilapia_calliptera
FBgn0036828	CG6841	99	71.075	ENSAMXG00000001929	prpf6	95	70.968	Astyanax_mexicanus
FBgn0036828	CG6841	98	72.425	ENSBTAG00000011656	PRPF6	99	72.121	Bos_taurus
FBgn0036828	CG6841	98	72.425	ENSCJAG00000010616	PRPF6	99	71.996	Callithrix_jacchus
FBgn0036828	CG6841	98	72.115	ENSCAFG00000013165	PRPF6	99	72.121	Canis_familiaris
FBgn0036828	CG6841	98	72.115	ENSCAFG00020002050	PRPF6	99	72.121	Canis_lupus_dingo
FBgn0036828	CG6841	98	72.425	ENSCHIG00000018187	PRPF6	99	72.121	Capra_hircus
FBgn0036828	CG6841	98	72.318	ENSTSYG00000007814	PRPF6	99	71.888	Carlito_syrichta
FBgn0036828	CG6841	96	71.727	ENSCAPG00000015077	PRPF6	99	71.413	Cavia_aperea
FBgn0036828	CG6841	98	72.318	ENSCPOG00000007518	PRPF6	99	72.013	Cavia_porcellus
FBgn0036828	CG6841	98	69.742	ENSCCAG00000024564	PRPF6	99	69.313	Cebus_capucinus
FBgn0036828	CG6841	98	72.210	ENSCATG00000037473	PRPF6	99	71.781	Cercocebus_atys
FBgn0036828	CG6841	98	70.386	ENSCLAG00000003854	PRPF6	99	69.957	Chinchilla_lanigera
FBgn0036828	CG6841	98	69.926	ENSCSAG00000016742	PRPF6	99	69.501	Chlorocebus_sabaeus
FBgn0036828	CG6841	84	61.301	ENSCHOG00000003315	-	100	61.301	Choloepus_hoffmanni
FBgn0036828	CG6841	99	71.882	ENSCPBG00000013964	PRPF6	97	71.882	Chrysemys_picta_bellii
FBgn0036828	CG6841	99	65.933	ENSCING00000008817	-	99	65.823	Ciona_intestinalis
FBgn0036828	CG6841	98	72.210	ENSCANG00000038230	PRPF6	99	71.781	Colobus_angolensis_palliatus
FBgn0036828	CG6841	98	72.318	ENSCGRG00001022666	Prpf6	99	72.013	Cricetulus_griseus_chok1gshd
FBgn0036828	CG6841	98	69.081	ENSCSEG00000018561	prpf6	99	68.973	Cynoglossus_semilaevis
FBgn0036828	CG6841	99	71.706	ENSCVAG00000010550	prpf6	96	71.598	Cyprinodon_variegatus
FBgn0036828	CG6841	98	70.936	ENSDARG00000091367	prpf6	98	70.829	Danio_rerio
FBgn0036828	CG6841	98	72.425	ENSDNOG00000040544	PRPF6	99	72.121	Dasypus_novemcinctus
FBgn0036828	CG6841	90	72.759	ENSDORG00000005406	Prpf6	99	72.759	Dipodomys_ordii
FBgn0036828	CG6841	83	76.292	ENSETEG00000004447	PRPF6	83	76.292	Echinops_telfairi
FBgn0036828	CG6841	99	70.276	ENSEBUG00000008835	prpf6	99	69.851	Eptatretus_burgeri
FBgn0036828	CG6841	98	73.123	ENSEASG00005023115	PRPF6	99	72.451	Equus_asinus_asinus
FBgn0036828	CG6841	98	68.562	ENSECAG00000013983	PRPF6	99	68.133	Equus_caballus
FBgn0036828	CG6841	86	69.718	ENSEEUG00000000180	PRPF6	79	69.718	Erinaceus_europaeus
FBgn0036828	CG6841	99	70.740	ENSELUG00000001945	prpf6	93	70.418	Esox_lucius
FBgn0036828	CG6841	98	72.115	ENSFCAG00000001183	PRPF6	99	72.121	Felis_catus
FBgn0036828	CG6841	99	67.479	ENSFALG00000006046	-	97	67.479	Ficedula_albicollis
FBgn0036828	CG6841	99	72.063	ENSFALG00000010326	-	98	71.640	Ficedula_albicollis
FBgn0036828	CG6841	98	71.245	ENSFDAG00000006451	PRPF6	98	72.822	Fukomys_damarensis
FBgn0036828	CG6841	99	71.828	ENSFHEG00000000560	prpf6	96	71.505	Fundulus_heteroclitus
FBgn0036828	CG6841	99	70.784	ENSGMOG00000015622	prpf6	99	70.950	Gadus_morhua
FBgn0036828	CG6841	98	72.650	ENSGALG00000006001	PRPF6	99	72.222	Gallus_gallus
FBgn0036828	CG6841	99	68.280	ENSGAFG00000021109	prpf6	96	68.172	Gambusia_affinis
FBgn0036828	CG6841	99	70.874	ENSGACG00000002576	prpf6	99	70.874	Gasterosteus_aculeatus
FBgn0036828	CG6841	99	71.882	ENSGAGG00000008653	PRPF6	97	71.882	Gopherus_agassizii
FBgn0036828	CG6841	98	72.210	ENSGGOG00000016876	PRPF6	99	71.781	Gorilla_gorilla
FBgn0036828	CG6841	99	71.828	ENSHBUG00000004496	prpf6	96	71.720	Haplochromis_burtoni
FBgn0036828	CG6841	98	72.318	ENSHGLG00000009222	PRPF6	99	71.888	Heterocephalus_glaber_female
FBgn0036828	CG6841	96	72.277	ENSHGLG00100016600	PRPF6	99	71.965	Heterocephalus_glaber_male
FBgn0036828	CG6841	99	70.968	ENSHCOG00000011513	prpf6	96	70.860	Hippocampus_comes
FBgn0036828	CG6841	99	71.016	ENSIPUG00000004912	prpf6	96	71.016	Ictalurus_punctatus
FBgn0036828	CG6841	98	70.311	ENSSTOG00000002922	PRPF6	99	69.882	Ictidomys_tridecemlineatus
FBgn0036828	CG6841	98	72.318	ENSJJAG00000000836	Prpf6	99	71.888	Jaculus_jaculus
FBgn0036828	CG6841	99	71.935	ENSKMAG00000017800	prpf6	96	71.828	Kryptolebias_marmoratus
FBgn0036828	CG6841	99	71.183	ENSLBEG00000012582	prpf6	96	70.968	Labrus_bergylta
FBgn0036828	CG6841	99	71.186	ENSLOCG00000004827	prpf6	96	70.445	Lepisosteus_oculatus
FBgn0036828	CG6841	98	72.103	ENSLAFG00000005272	PRPF6	99	71.798	Loxodonta_africana
FBgn0036828	CG6841	98	72.210	ENSMFAG00000037542	PRPF6	99	71.781	Macaca_fascicularis
FBgn0036828	CG6841	98	67.417	ENSMMUG00000015558	PRPF6	95	74.291	Macaca_mulatta
FBgn0036828	CG6841	98	63.470	ENSMNEG00000045555	PRPF6	99	63.039	Macaca_nemestrina
FBgn0036828	CG6841	99	71.505	ENSMAMG00000010718	prpf6	96	71.398	Mastacembelus_armatus
FBgn0036828	CG6841	99	71.536	ENSMZEG00005015261	-	99	71.429	Maylandia_zebra
FBgn0036828	CG6841	91	72.229	ENSMZEG00005026539	prpf6	98	72.326	Maylandia_zebra
FBgn0036828	CG6841	96	72.618	ENSMGAG00000006634	PRPF6	99	72.180	Meleagris_gallopavo
FBgn0036828	CG6841	98	72.318	ENSMAUG00000013969	Prpf6	99	72.013	Mesocricetus_auratus
FBgn0036828	CG6841	86	72.727	ENSMICG00000017793	PRPF6	98	72.727	Microcebus_murinus
FBgn0036828	CG6841	98	72.425	ENSMOCG00000001701	Prpf6	99	72.121	Microtus_ochrogaster
FBgn0036828	CG6841	98	71.784	ENSMMOG00000020419	prpf6	99	71.676	Mola_mola
FBgn0036828	CG6841	96	71.551	ENSMODG00000017051	PRPF6	99	71.062	Monodelphis_domestica
FBgn0036828	CG6841	98	72.052	ENSMALG00000000089	prpf6	99	72.052	Monopterus_albus
FBgn0036828	CG6841	98	66.845	MGP_CAROLIEiJ_G0024814	Prpf6	99	66.523	Mus_caroli
FBgn0036828	CG6841	98	72.318	ENSMUSG00000002455	Prpf6	99	72.013	Mus_musculus
FBgn0036828	CG6841	98	72.318	MGP_PahariEiJ_G0026262	Prpf6	99	72.013	Mus_pahari
FBgn0036828	CG6841	98	72.318	MGP_SPRETEiJ_G0025741	Prpf6	99	72.013	Mus_spretus
FBgn0036828	CG6841	89	73.447	ENSMPUG00000008673	PRPF6	98	73.544	Mustela_putorius_furo
FBgn0036828	CG6841	98	72.318	ENSNGAG00000003365	Prpf6	99	72.013	Nannospalax_galili
FBgn0036828	CG6841	99	71.935	ENSNBRG00000015025	prpf6	96	71.828	Neolamprologus_brichardi
FBgn0036828	CG6841	98	72.210	ENSNLEG00000010208	PRPF6	99	71.781	Nomascus_leucogenys
FBgn0036828	CG6841	98	67.814	ENSMEUG00000009824	-	89	68.327	Notamacropus_eugenii
FBgn0036828	CG6841	98	68.026	ENSODEG00000004841	PRPF6	99	67.597	Octodon_degus
FBgn0036828	CG6841	99	71.720	ENSONIG00000017406	prpf6	96	71.613	Oreochromis_niloticus
FBgn0036828	CG6841	98	72.115	ENSOANG00000004920	PRPF6	99	71.688	Ornithorhynchus_anatinus
FBgn0036828	CG6841	97	71.861	ENSOCUG00000014151	PRPF6	99	71.553	Oryctolagus_cuniculus
FBgn0036828	CG6841	99	72.043	ENSORLG00000009592	prpf6	96	72.043	Oryzias_latipes
FBgn0036828	CG6841	99	72.151	ENSORLG00020001458	prpf6	96	71.720	Oryzias_latipes_hni
FBgn0036828	CG6841	99	72.151	ENSORLG00015018762	prpf6	96	71.720	Oryzias_latipes_hsok
FBgn0036828	CG6841	99	71.935	ENSOMEG00000012174	prpf6	96	71.828	Oryzias_melastigma
FBgn0036828	CG6841	98	66.096	ENSOGAG00000007573	PRPF6	99	65.668	Otolemur_garnettii
FBgn0036828	CG6841	99	71.596	ENSOARG00000008776	PRPF6	99	71.291	Ovis_aries
FBgn0036828	CG6841	98	72.210	ENSPPAG00000008686	PRPF6	99	71.781	Pan_paniscus
FBgn0036828	CG6841	98	72.425	ENSPPRG00000008497	PRPF6	99	72.121	Panthera_pardus
FBgn0036828	CG6841	96	72.387	ENSPTIG00000011184	PRPF6	96	72.075	Panthera_tigris_altaica
FBgn0036828	CG6841	98	72.210	ENSPTRG00000013765	PRPF6	99	71.781	Pan_troglodytes
FBgn0036828	CG6841	98	72.318	ENSPANG00000024135	PRPF6	99	71.888	Papio_anubis
FBgn0036828	CG6841	98	71.016	ENSPKIG00000005627	prpf6	98	71.016	Paramormyrops_kingsleyae
FBgn0036828	CG6841	91	72.738	ENSPSIG00000007717	PRPF6	98	73.171	Pelodiscus_sinensis
FBgn0036828	CG6841	99	70.430	ENSPMGG00000008925	prpf6	96	70.430	Periophthalmus_magnuspinnatus
FBgn0036828	CG6841	98	72.210	ENSPEMG00000016036	Prpf6	99	71.905	Peromyscus_maniculatus_bairdii
FBgn0036828	CG6841	99	70.582	ENSPMAG00000006144	prpf6	98	71.613	Petromyzon_marinus
FBgn0036828	CG6841	98	72.329	ENSPCIG00000017909	PRPF6	99	71.902	Phascolarctos_cinereus
FBgn0036828	CG6841	99	71.033	ENSPFOG00000006431	prpf6	96	70.927	Poecilia_formosa
FBgn0036828	CG6841	99	71.613	ENSPLAG00000005974	prpf6	96	71.505	Poecilia_latipinna
FBgn0036828	CG6841	99	71.828	ENSPMEG00000009977	prpf6	96	71.720	Poecilia_mexicana
FBgn0036828	CG6841	99	71.720	ENSPREG00000017993	prpf6	92	71.613	Poecilia_reticulata
FBgn0036828	CG6841	98	71.888	ENSPPYG00000011256	PRPF6	99	71.459	Pongo_abelii
FBgn0036828	CG6841	96	73.693	ENSPCAG00000006536	PRPF6	88	73.039	Procavia_capensis
FBgn0036828	CG6841	98	72.210	ENSPCOG00000016881	PRPF6	99	71.905	Propithecus_coquereli
FBgn0036828	CG6841	98	68.133	ENSPVAG00000014316	PRPF6	99	67.815	Pteropus_vampyrus
FBgn0036828	CG6841	66	71.244	ENSPNYG00000001939	prpf6	69	71.244	Pundamilia_nyererei
FBgn0036828	CG6841	98	71.582	ENSPNAG00000015606	prpf6	95	71.475	Pygocentrus_nattereri
FBgn0036828	CG6841	98	72.318	ENSRNOG00000051498	Prpf6	99	72.013	Rattus_norvegicus
FBgn0036828	CG6841	98	72.210	ENSRBIG00000043613	PRPF6	99	71.781	Rhinopithecus_bieti
FBgn0036828	CG6841	98	69.444	ENSRROG00000040969	PRPF6	99	69.017	Rhinopithecus_roxellana
FBgn0036828	CG6841	91	70.217	ENSSBOG00000020632	PRPF6	90	70.557	Saimiri_boliviensis_boliviensis
FBgn0036828	CG6841	98	72.329	ENSSHAG00000016810	PRPF6	99	71.902	Sarcophilus_harrisii
FBgn0036828	CG6841	98	71.598	ENSSFOG00015020859	prpf6	99	71.598	Scleropages_formosus
FBgn0036828	CG6841	99	71.490	ENSSMAG00000008112	prpf6	96	71.490	Scophthalmus_maximus
FBgn0036828	CG6841	99	71.613	ENSSDUG00000016142	prpf6	96	71.505	Seriola_dumerili
FBgn0036828	CG6841	99	71.613	ENSSLDG00000025283	prpf6	99	68.891	Seriola_lalandi_dorsalis
FBgn0036828	CG6841	91	72.929	ENSSPUG00000018260	PRPF6	98	73.023	Sphenodon_punctatus
FBgn0036828	CG6841	99	71.398	ENSSPAG00000015850	prpf6	96	71.290	Stegastes_partitus
FBgn0036828	CG6841	99	71.519	ENSSSCG00000029119	PRPF6	99	72.267	Sus_scrofa
FBgn0036828	CG6841	99	72.495	ENSTGUG00000007221	PRPF6	99	72.068	Taeniopygia_guttata
FBgn0036828	CG6841	99	71.720	ENSTRUG00000002920	prpf6	96	71.613	Takifugu_rubripes
FBgn0036828	CG6841	98	66.987	ENSTNIG00000017873	prpf6	99	66.880	Tetraodon_nigroviridis
FBgn0036828	CG6841	87	67.416	ENSTBEG00000005348	PRPF6	84	65.169	Tupaia_belangeri
FBgn0036828	CG6841	98	71.996	ENSTTRG00000013068	PRPF6	99	71.690	Tursiops_truncatus
FBgn0036828	CG6841	97	70.915	ENSUMAG00000021631	PRPF6	98	70.788	Ursus_maritimus
FBgn0036828	CG6841	98	72.115	ENSVVUG00000014948	PRPF6	99	72.121	Vulpes_vulpes
FBgn0036828	CG6841	99	71.670	ENSXETG00000012054	prpf6	97	71.670	Xenopus_tropicalis
FBgn0036828	CG6841	99	71.828	ENSXCOG00000008082	prpf6	96	71.720	Xiphophorus_couchianus
FBgn0036828	CG6841	99	71.828	ENSXMAG00000015581	prpf6	96	71.720	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000244	spliceosomal tri-snRNP complex assembly	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0003723	RNA binding	-	ISS	Function
GO:0005634	nucleus	15492211.	IC	Component
GO:0030532	small nuclear ribonucleoprotein complex	10908584.	ISS	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component