EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0036916 (Gene tree)
Gene ID: 40173
Gene Symbol: Mtr3
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 1311 bases
Position: chr3L:19912405-19913715
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0074687	RNase_PH	PF01138.21	6.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0074918	-	1253	-	FBpp0074687	326 (aa)	-	Q5BID5

Gene Model

Click here to download FBgn0036916's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0036916's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0036916	Mtr3	50	31.928	FBgn0032487	Ski6	65	31.928

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0036916	Mtr3	61	30.846	ENSCING00000013458	-	69	30.244	Ciona_intestinalis
FBgn0036916	Mtr3	61	30.198	ENSCSAVG00000002563	-	56	35.099	Ciona_savignyi
FBgn0036916	Mtr3	50	30.952	ENSCSAVG00000008006	-	67	30.952	Ciona_savignyi
FBgn0036916	Mtr3	65	30.516	ENSMAMG00000016983	exosc6	63	32.704	Mastacembelus_armatus
FBgn0036916	Mtr3	63	30.516	ENSPKIG00000022020	exosc6	70	30.526	Paramormyrops_kingsleyae
FBgn0036916	Mtr3	65	30.047	ENSSDUG00000021109	exosc6	52	35.211	Seriola_dumerili

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000176	nuclear exosome (RNase complex)	21873635.	IBA	Component
GO:0000176	nuclear exosome (RNase complex)	12490954.	IDA	Component
GO:0000176	nuclear exosome (RNase complex)	12490954.	ISS	Component
GO:0000177	cytoplasmic exosome (RNase complex)	21873635.	IBA	Component
GO:0000178	exosome (RNase complex)	12483225.	IDA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005737	cytoplasm	16407406.	IDA	Component
GO:0010468	regulation of gene expression	20185544.	IMP	Process
GO:0016075	rRNA catabolic process	21873635.	IBA	Process
GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	21873635.	IBA	Process
GO:0034475	U4 snRNA 3'-end processing	21873635.	IBA	Process
GO:0071028	nuclear mRNA surveillance	21873635.	IBA	Process
GO:0071051	polyadenylation-dependent snoRNA 3'-end processing	21873635.	IBA	Process