EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0037073 (Gene tree)
Gene ID: 40360
Gene Symbol: Tsr1
Alias: -
Full Name: Tsr1 ribosome assembly factor
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 3018 bases
Position: chr3L:21335215-21338232
Accession: FBgn0037073
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0077998	AARP2CN	PF08142.12	4.6e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0078342	-	2844	-	FBpp0077998	814 (aa)	-	Q9VP47

Gene Model

Click here to download FBgn0037073's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0037073's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0037073	Tsr1	96	43.424	ENSG00000167721	TSR1	97	43.052	Homo_sapiens
FBgn0037073	Tsr1	96	42.927	ENSAPOG00000020891	tsr1	96	43.788	Acanthochromis_polyacanthus
FBgn0037073	Tsr1	96	44.020	ENSAMEG00000007599	TSR1	96	42.701	Ailuropoda_melanoleuca
FBgn0037073	Tsr1	96	43.742	ENSACIG00000007090	tsr1	96	44.183	Amphilophus_citrinellus
FBgn0037073	Tsr1	96	41.860	ENSAOCG00000023284	tsr1	96	43.137	Amphiprion_ocellaris
FBgn0037073	Tsr1	90	41.873	ENSAPEG00000008452	tsr1	97	43.438	Amphiprion_percula
FBgn0037073	Tsr1	96	43.735	ENSATEG00000021961	tsr1	96	43.857	Anabas_testudineus
FBgn0037073	Tsr1	88	45.602	ENSAPLG00000013422	TSR1	97	45.873	Anas_platyrhynchos
FBgn0037073	Tsr1	73	35.417	ENSACAG00000000859	TSR1	97	36.378	Anolis_carolinensis
FBgn0037073	Tsr1	96	43.672	ENSANAG00000031071	TSR1	97	42.432	Aotus_nancymaae
FBgn0037073	Tsr1	96	43.926	ENSACLG00000007595	tsr1	96	44.169	Astatotilapia_calliptera
FBgn0037073	Tsr1	96	44.541	ENSBTAG00000004225	TSR1	97	44.238	Bos_taurus
FBgn0037073	Tsr1	96	43.672	ENSCJAG00000012456	TSR1	97	42.432	Callithrix_jacchus
FBgn0037073	Tsr1	89	42.231	ENSCAFG00000019273	-	96	45.053	Canis_familiaris
FBgn0037073	Tsr1	96	44.610	ENSCAFG00000002106	-	97	43.688	Canis_familiaris
FBgn0037073	Tsr1	96	44.444	ENSCAFG00020009728	TSR1	97	43.527	Canis_lupus_dingo
FBgn0037073	Tsr1	96	44.665	ENSCHIG00000023935	TSR1	97	44.114	Capra_hircus
FBgn0037073	Tsr1	96	43.300	ENSTSYG00000005468	TSR1	97	42.308	Carlito_syrichta
FBgn0037073	Tsr1	92	43.208	ENSCPOG00000014833	TSR1	99	42.950	Cavia_porcellus
FBgn0037073	Tsr1	92	42.098	ENSCCAG00000028962	TSR1	98	40.803	Cebus_capucinus
FBgn0037073	Tsr1	96	43.672	ENSCATG00000044262	TSR1	97	43.052	Cercocebus_atys
FBgn0037073	Tsr1	96	44.238	ENSCLAG00000005567	TSR1	97	43.494	Chinchilla_lanigera
FBgn0037073	Tsr1	96	43.548	ENSCSAG00000013788	TSR1	97	42.928	Chlorocebus_sabaeus
FBgn0037073	Tsr1	95	43.484	ENSCPBG00000020363	TSR1	94	44.099	Chrysemys_picta_bellii
FBgn0037073	Tsr1	96	40.074	ENSCING00000020658	-	99	39.583	Ciona_intestinalis
FBgn0037073	Tsr1	96	39.099	ENSCSAVG00000001875	-	100	39.364	Ciona_savignyi
FBgn0037073	Tsr1	96	39.163	ENSCANG00000033056	TSR1	93	57.544	Colobus_angolensis_palliatus
FBgn0037073	Tsr1	96	43.140	ENSCGRG00001023942	Tsr1	97	42.647	Cricetulus_griseus_chok1gshd
FBgn0037073	Tsr1	96	39.670	ENSCGRG00000013015	Tsr1	97	53.521	Cricetulus_griseus_crigri
FBgn0037073	Tsr1	96	43.387	ENSCSEG00000013009	tsr1	96	43.812	Cynoglossus_semilaevis
FBgn0037073	Tsr1	96	42.770	ENSCVAG00000000506	tsr1	96	43.548	Cyprinodon_variegatus
FBgn0037073	Tsr1	96	43.866	ENSDARG00000007744	tsr1	96	44.540	Danio_rerio
FBgn0037073	Tsr1	96	43.742	ENSDNOG00000004715	TSR1	96	44.575	Dasypus_novemcinctus
FBgn0037073	Tsr1	96	43.688	ENSDORG00000016371	-	97	44.059	Dipodomys_ordii
FBgn0037073	Tsr1	96	39.021	ENSDORG00000023234	-	99	39.147	Dipodomys_ordii
FBgn0037073	Tsr1	83	59.155	ENSETEG00000017534	TSR1	86	59.155	Echinops_telfairi
FBgn0037073	Tsr1	92	42.746	ENSEBUG00000013731	TSR1	95	42.506	Eptatretus_burgeri
FBgn0037073	Tsr1	96	44.554	ENSEASG00005009302	TSR1	94	44.252	Equus_asinus_asinus
FBgn0037073	Tsr1	96	45.093	ENSECAG00000009114	TSR1	97	44.169	Equus_caballus
FBgn0037073	Tsr1	96	41.943	ENSELUG00000020984	tsr1	92	42.998	Esox_lucius
FBgn0037073	Tsr1	96	44.610	ENSFCAG00000006313	TSR1	97	43.936	Felis_catus
FBgn0037073	Tsr1	97	44.994	ENSFALG00000006532	TSR1	97	45.735	Ficedula_albicollis
FBgn0037073	Tsr1	96	44.486	ENSFDAG00000006038	TSR1	97	43.990	Fukomys_damarensis
FBgn0037073	Tsr1	96	44.266	ENSFHEG00000003626	tsr1	96	44.390	Fundulus_heteroclitus
FBgn0037073	Tsr1	96	41.328	ENSGMOG00000010336	tsr1	96	43.173	Gadus_morhua
FBgn0037073	Tsr1	96	43.827	ENSGAFG00000012993	tsr1	96	43.995	Gambusia_affinis
FBgn0037073	Tsr1	96	42.454	ENSGACG00000010843	tsr1	96	41.646	Gasterosteus_aculeatus
FBgn0037073	Tsr1	95	43.609	ENSGAGG00000025619	-	97	43.727	Gopherus_agassizii
FBgn0037073	Tsr1	96	43.300	ENSGGOG00000001704	TSR1	97	43.052	Gorilla_gorilla
FBgn0037073	Tsr1	96	44.363	ENSHBUG00000017904	tsr1	97	44.152	Haplochromis_burtoni
FBgn0037073	Tsr1	96	45.285	ENSHGLG00000012806	-	97	44.678	Heterocephalus_glaber_female
FBgn0037073	Tsr1	90	39.761	ENSHGLG00000015688	-	95	38.034	Heterocephalus_glaber_female
FBgn0037073	Tsr1	96	45.285	ENSHGLG00100015392	TSR1	97	44.678	Heterocephalus_glaber_male
FBgn0037073	Tsr1	96	43.602	ENSHCOG00000001432	tsr1	96	43.851	Hippocampus_comes
FBgn0037073	Tsr1	96	42.597	ENSIPUG00000004618	tsr1	96	43.260	Ictalurus_punctatus
FBgn0037073	Tsr1	96	42.999	ENSSTOG00000011819	TSR1	97	43.827	Ictidomys_tridecemlineatus
FBgn0037073	Tsr1	88	42.318	ENSJJAG00000019505	Tsr1	92	41.957	Jaculus_jaculus
FBgn0037073	Tsr1	96	43.362	ENSKMAG00000005763	tsr1	96	44.431	Kryptolebias_marmoratus
FBgn0037073	Tsr1	96	42.561	ENSLBEG00000021823	tsr1	96	44.034	Labrus_bergylta
FBgn0037073	Tsr1	96	43.602	ENSLACG00000002197	TSR1	96	43.457	Latimeria_chalumnae
FBgn0037073	Tsr1	87	43.077	ENSLOCG00000006491	TSR1	94	43.077	Lepisosteus_oculatus
FBgn0037073	Tsr1	96	43.672	ENSMFAG00000021330	TSR1	97	43.052	Macaca_fascicularis
FBgn0037073	Tsr1	96	43.548	ENSMMUG00000017519	TSR1	97	42.928	Macaca_mulatta
FBgn0037073	Tsr1	96	43.672	ENSMNEG00000031382	TSR1	97	43.052	Macaca_nemestrina
FBgn0037073	Tsr1	96	43.672	ENSMLEG00000036733	TSR1	97	43.052	Mandrillus_leucophaeus
FBgn0037073	Tsr1	96	42.525	ENSMAMG00000017918	tsr1	96	43.659	Mastacembelus_armatus
FBgn0037073	Tsr1	96	43.780	ENSMZEG00005007477	tsr1	96	44.321	Maylandia_zebra
FBgn0037073	Tsr1	97	44.623	ENSMGAG00000005576	TSR1	97	45.365	Meleagris_gallopavo
FBgn0037073	Tsr1	96	43.478	ENSMICG00000012943	TSR1	97	42.928	Microcebus_murinus
FBgn0037073	Tsr1	96	42.469	ENSMOCG00000022764	Tsr1	97	41.975	Microtus_ochrogaster
FBgn0037073	Tsr1	96	43.511	ENSMMOG00000014280	tsr1	96	44.005	Mola_mola
FBgn0037073	Tsr1	96	43.881	ENSMODG00000010658	TSR1	97	43.494	Monodelphis_domestica
FBgn0037073	Tsr1	96	43.223	ENSMALG00000011681	tsr1	96	43.223	Monopterus_albus
FBgn0037073	Tsr1	96	43.672	MGP_CAROLIEiJ_G0016727	Tsr1	97	43.052	Mus_caroli
FBgn0037073	Tsr1	96	43.797	ENSMUSG00000038335	Tsr1	97	43.176	Mus_musculus
FBgn0037073	Tsr1	96	43.797	MGP_PahariEiJ_G0017864	Tsr1	97	43.052	Mus_pahari
FBgn0037073	Tsr1	96	43.797	MGP_SPRETEiJ_G0017570	Tsr1	97	43.176	Mus_spretus
FBgn0037073	Tsr1	78	45.732	ENSMPUG00000013000	TSR1	96	44.901	Mustela_putorius_furo
FBgn0037073	Tsr1	96	43.742	ENSMLUG00000003505	TSR1	97	43.441	Myotis_lucifugus
FBgn0037073	Tsr1	96	44.010	ENSNBRG00000020728	tsr1	96	43.447	Neolamprologus_brichardi
FBgn0037073	Tsr1	96	41.476	ENSNLEG00000017184	TSR1	97	41.349	Nomascus_leucogenys
FBgn0037073	Tsr1	96	44.226	ENSONIG00000013131	tsr1	96	44.349	Oreochromis_niloticus
FBgn0037073	Tsr1	90	40.263	ENSOANG00000008637	TSR1	97	40.604	Ornithorhynchus_anatinus
FBgn0037073	Tsr1	96	43.688	ENSOCUG00000014256	TSR1	97	43.016	Oryctolagus_cuniculus
FBgn0037073	Tsr1	96	43.452	ENSORLG00000004926	tsr1	96	44.623	Oryzias_latipes
FBgn0037073	Tsr1	96	44.458	ENSORLG00020008792	tsr1	96	44.623	Oryzias_latipes_hni
FBgn0037073	Tsr1	96	43.696	ENSORLG00015013838	tsr1	96	44.870	Oryzias_latipes_hsok
FBgn0037073	Tsr1	96	44.472	ENSOMEG00000004830	tsr1	96	45.421	Oryzias_melastigma
FBgn0037073	Tsr1	96	43.190	ENSOGAG00000004492	TSR1	97	42.402	Otolemur_garnettii
FBgn0037073	Tsr1	96	44.665	ENSOARG00000015437	TSR1	94	44.362	Ovis_aries
FBgn0037073	Tsr1	96	43.548	ENSPPAG00000036355	TSR1	97	43.176	Pan_paniscus
FBgn0037073	Tsr1	96	44.610	ENSPPRG00000015519	-	97	43.936	Panthera_pardus
FBgn0037073	Tsr1	96	44.610	ENSPTIG00000010608	TSR1	97	43.936	Panthera_tigris_altaica
FBgn0037073	Tsr1	96	43.548	ENSPTRG00000008547	TSR1	97	43.176	Pan_troglodytes
FBgn0037073	Tsr1	96	42.164	ENSPANG00000024463	TSR1	97	41.542	Papio_anubis
FBgn0037073	Tsr1	96	43.457	ENSPKIG00000013972	tsr1	96	43.612	Paramormyrops_kingsleyae
FBgn0037073	Tsr1	82	45.322	ENSPSIG00000018258	TSR1	94	45.760	Pelodiscus_sinensis
FBgn0037073	Tsr1	96	44.581	ENSPMGG00000011577	tsr1	96	45.398	Periophthalmus_magnuspinnatus
FBgn0037073	Tsr1	96	42.927	ENSPEMG00000018033	Tsr1	97	42.506	Peromyscus_maniculatus_bairdii
FBgn0037073	Tsr1	96	43.317	ENSPCIG00000009357	TSR1	95	43.280	Phascolarctos_cinereus
FBgn0037073	Tsr1	90	44.589	ENSPFOG00000004483	TSR1	96	44.815	Poecilia_formosa
FBgn0037073	Tsr1	96	44.458	ENSPLAG00000022320	tsr1	96	45.018	Poecilia_latipinna
FBgn0037073	Tsr1	96	44.704	ENSPMEG00000004577	tsr1	96	45.074	Poecilia_mexicana
FBgn0037073	Tsr1	96	44.143	ENSPREG00000010354	tsr1	94	44.581	Poecilia_reticulata
FBgn0037073	Tsr1	96	40.444	ENSPPYG00000007792	TSR1	97	39.951	Pongo_abelii
FBgn0037073	Tsr1	96	43.478	ENSPCOG00000017928	TSR1	97	43.176	Propithecus_coquereli
FBgn0037073	Tsr1	96	43.548	ENSPVAG00000002162	TSR1	97	43.424	Pteropus_vampyrus
FBgn0037073	Tsr1	96	44.172	ENSPNYG00000016163	tsr1	96	44.417	Pundamilia_nyererei
FBgn0037073	Tsr1	96	43.220	ENSPNAG00000008659	tsr1	96	43.293	Pygocentrus_nattereri
FBgn0037073	Tsr1	96	43.247	ENSRNOG00000002980	Tsr1	97	43.618	Rattus_norvegicus
FBgn0037073	Tsr1	96	43.548	ENSRBIG00000040016	TSR1	97	42.928	Rhinopithecus_bieti
FBgn0037073	Tsr1	96	43.548	ENSRROG00000030361	TSR1	97	42.928	Rhinopithecus_roxellana
FBgn0037073	Tsr1	96	43.176	ENSSBOG00000020785	TSR1	97	42.308	Saimiri_boliviensis_boliviensis
FBgn0037073	Tsr1	96	44.183	ENSSHAG00000011394	TSR1	97	44.404	Sarcophilus_harrisii
FBgn0037073	Tsr1	96	43.571	ENSSFOG00015005455	tsr1	96	42.963	Scleropages_formosus
FBgn0037073	Tsr1	96	41.932	ENSSMAG00000009504	tsr1	96	42.611	Scophthalmus_maximus
FBgn0037073	Tsr1	96	43.329	ENSSDUG00000012074	tsr1	96	43.696	Seriola_dumerili
FBgn0037073	Tsr1	96	43.032	ENSSLDG00000002031	tsr1	96	43.827	Seriola_lalandi_dorsalis
FBgn0037073	Tsr1	90	46.725	ENSSARG00000000759	TSR1	90	46.725	Sorex_araneus
FBgn0037073	Tsr1	97	45.098	ENSSPUG00000007042	TSR1	97	43.788	Sphenodon_punctatus
FBgn0037073	Tsr1	96	42.701	ENSSPAG00000021951	tsr1	96	44.078	Stegastes_partitus
FBgn0037073	Tsr1	96	44.238	ENSSSCG00000038534	TSR1	97	43.564	Sus_scrofa
FBgn0037073	Tsr1	88	46.206	ENSTGUG00000005883	TSR1	98	46.341	Taeniopygia_guttata
FBgn0037073	Tsr1	96	43.120	ENSTRUG00000004665	tsr1	96	43.558	Takifugu_rubripes
FBgn0037073	Tsr1	96	43.210	ENSTNIG00000016196	tsr1	97	43.580	Tetraodon_nigroviridis
FBgn0037073	Tsr1	63	69.903	ENSTBEG00000015275	-	64	69.903	Tupaia_belangeri
FBgn0037073	Tsr1	96	44.610	ENSTTRG00000001177	TSR1	97	43.936	Tursiops_truncatus
FBgn0037073	Tsr1	96	44.836	ENSUAMG00000025160	TSR1	97	43.429	Ursus_americanus
FBgn0037073	Tsr1	93	43.202	ENSUMAG00000009294	TSR1	96	42.132	Ursus_maritimus
FBgn0037073	Tsr1	83	38.857	ENSVPAG00000000228	TSR1	99	39.255	Vicugna_pacos
FBgn0037073	Tsr1	96	44.610	ENSVVUG00000021767	TSR1	97	43.688	Vulpes_vulpes
FBgn0037073	Tsr1	96	40.149	ENSXETG00000023797	tsr1	97	39.060	Xenopus_tropicalis
FBgn0037073	Tsr1	96	43.580	ENSXCOG00000009635	tsr1	96	43.788	Xiphophorus_couchianus
FBgn0037073	Tsr1	96	43.457	ENSXMAG00000001397	tsr1	93	43.827	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0005525	GTP binding	21873635.	IBA	Function
GO:0005730	nucleolus	-	ISS	Component
GO:0030688	preribosome, small subunit precursor	21873635.	IBA	Component
GO:0034511	U3 snoRNA binding	21873635.	IBA	Function