EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0037081 (Gene tree)
Gene ID: 40369
Gene Symbol: barc
Alias: -
Full Name: barricade
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 12747 bases
Position: chr3L:21420388-21433134
Accession: FBgn0037081
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0078053	RRM_1	PF00076.22	5e-12	1	1
FBpp0078054	RRM_1	PF00076.22	5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0078400	-	2287	-	FBpp0078054	556 (aa)	-	Q7K204
FBtr0078399	-	2272	-	FBpp0078053	556 (aa)	-	Q7K204

Gene Model

Click here to download FBgn0037081's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0037081's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0037081	barc	57	47.368	ENSG00000102241	HTATSF1	77	45.263	Homo_sapiens
FBgn0037081	barc	62	46.910	ENSAPOG00000009823	htatsf1	77	45.115	Acanthochromis_polyacanthus
FBgn0037081	barc	65	45.135	ENSACIG00000020459	htatsf1	88	42.643	Amphilophus_citrinellus
FBgn0037081	barc	62	46.610	ENSAOCG00000020994	htatsf1	76	45.480	Amphiprion_ocellaris
FBgn0037081	barc	62	46.610	ENSAPEG00000016432	htatsf1	77	45.480	Amphiprion_percula
FBgn0037081	barc	62	47.458	ENSATEG00000008903	htatsf1	82	46.739	Anabas_testudineus
FBgn0037081	barc	62	45.533	ENSAPLG00000012401	HTATSF1	86	43.631	Anas_platyrhynchos
FBgn0037081	barc	61	44.152	ENSACAG00000009346	HTATSF1	85	42.179	Anolis_carolinensis
FBgn0037081	barc	67	43.959	ENSACLG00000008096	htatsf1	85	44.216	Astatotilapia_calliptera
FBgn0037081	barc	63	44.134	ENSAMXG00000008387	htatsf1	77	44.413	Astyanax_mexicanus
FBgn0037081	barc	57	38.769	WBGene00022025	Y65B4A.1	94	30.723	Caenorhabditis_elegans
FBgn0037081	barc	64	45.251	ENSCPBG00000026092	HTATSF1	86	43.989	Chrysemys_picta_bellii
FBgn0037081	barc	68	38.243	ENSCING00000005914	-	73	38.421	Ciona_intestinalis
FBgn0037081	barc	72	37.129	ENSCSAVG00000000371	-	63	42.466	Ciona_savignyi
FBgn0037081	barc	64	45.304	ENSCVAG00000014070	htatsf1	82	44.444	Cyprinodon_variegatus
FBgn0037081	barc	65	45.082	ENSDARG00000056649	htatsf1	77	44.167	Danio_rerio
FBgn0037081	barc	64	39.633	ENSEBUG00000001534	htatsf1	75	38.770	Eptatretus_burgeri
FBgn0037081	barc	62	44.286	ENSELUG00000005486	htatsf1	68	44.000	Esox_lucius
FBgn0037081	barc	63	45.584	ENSFALG00000003728	HTATSF1	80	43.850	Ficedula_albicollis
FBgn0037081	barc	65	44.986	ENSFHEG00000020286	htatsf1	82	45.257	Fundulus_heteroclitus
FBgn0037081	barc	62	45.930	ENSGMOG00000016444	htatsf1	94	45.640	Gadus_morhua
FBgn0037081	barc	62	47.143	ENSGALG00000006410	HTATSF1	76	46.000	Gallus_gallus
FBgn0037081	barc	69	44.898	ENSGAFG00000003041	htatsf1	85	44.388	Gambusia_affinis
FBgn0037081	barc	62	44.986	ENSGACG00000020459	htatsf1	79	43.280	Gasterosteus_aculeatus
FBgn0037081	barc	67	43.445	ENSHBUG00000004392	htatsf1	85	43.702	Haplochromis_burtoni
FBgn0037081	barc	62	46.439	ENSHCOG00000009056	htatsf1	81	47.578	Hippocampus_comes
FBgn0037081	barc	64	44.847	ENSIPUG00000017828	htatsf1	75	44.915	Ictalurus_punctatus
FBgn0037081	barc	62	46.328	ENSKMAG00000007622	htatsf1	78	46.067	Kryptolebias_marmoratus
FBgn0037081	barc	62	47.191	ENSLBEG00000001154	htatsf1	77	46.154	Labrus_bergylta
FBgn0037081	barc	67	43.490	ENSLACG00000015989	HTATSF1	83	44.737	Latimeria_chalumnae
FBgn0037081	barc	65	32.345	ENSLOCG00000015118	htatsf1	77	31.081	Lepisosteus_oculatus
FBgn0037081	barc	66	45.187	ENSMAMG00000021225	htatsf1	84	45.187	Mastacembelus_armatus
FBgn0037081	barc	67	43.702	ENSMZEG00005000485	htatsf1	85	43.959	Maylandia_zebra
FBgn0037081	barc	62	47.143	ENSMGAG00000003558	HTATSF1	86	44.125	Meleagris_gallopavo
FBgn0037081	barc	64	45.429	ENSMMOG00000011013	htatsf1	80	45.983	Mola_mola
FBgn0037081	barc	64	45.404	ENSMODG00000014087	-	77	43.514	Monodelphis_domestica
FBgn0037081	barc	62	44.722	ENSMALG00000019977	htatsf1	78	44.633	Monopterus_albus
FBgn0037081	barc	70	43.176	ENSNBRG00000003818	htatsf1	88	43.424	Neolamprologus_brichardi
FBgn0037081	barc	64	44.972	ENSMEUG00000004133	-	83	44.904	Notamacropus_eugenii
FBgn0037081	barc	70	44.307	ENSONIG00000008638	htatsf1	88	43.564	Oreochromis_niloticus
FBgn0037081	barc	63	44.915	ENSOANG00000011674	-	83	44.633	Ornithorhynchus_anatinus
FBgn0037081	barc	62	48.588	ENSORLG00000002356	htatsf1	77	47.175	Oryzias_latipes
FBgn0037081	barc	62	48.870	ENSORLG00020017818	htatsf1	74	47.458	Oryzias_latipes_hni
FBgn0037081	barc	66	46.524	ENSORLG00015002268	htatsf1	78	46.893	Oryzias_latipes_hsok
FBgn0037081	barc	65	46.341	ENSOMEG00000007564	htatsf1	81	44.687	Oryzias_melastigma
FBgn0037081	barc	68	42.377	ENSPKIG00000024852	htatsf1	85	40.099	Paramormyrops_kingsleyae
FBgn0037081	barc	65	45.430	ENSPMGG00000006172	htatsf1	81	45.430	Periophthalmus_magnuspinnatus
FBgn0037081	barc	62	45.739	ENSPCIG00000030173	-	77	45.326	Phascolarctos_cinereus
FBgn0037081	barc	62	44.571	ENSPCIG00000018896	-	76	44.286	Phascolarctos_cinereus
FBgn0037081	barc	67	46.316	ENSPFOG00000007871	htatsf1	81	45.789	Poecilia_formosa
FBgn0037081	barc	69	44.784	ENSPLAG00000007532	htatsf1	87	44.529	Poecilia_latipinna
FBgn0037081	barc	67	45.789	ENSPMEG00000000352	htatsf1	84	45.263	Poecilia_mexicana
FBgn0037081	barc	69	44.275	ENSPREG00000007811	htatsf1	87	44.275	Poecilia_reticulata
FBgn0037081	barc	67	43.702	ENSPNYG00000016693	htatsf1	85	43.959	Pundamilia_nyererei
FBgn0037081	barc	67	43.814	ENSPNAG00000006166	htatsf1	83	42.784	Pygocentrus_nattereri
FBgn0037081	barc	62	45.404	ENSSHAG00000006440	-	87	44.068	Sarcophilus_harrisii
FBgn0037081	barc	62	45.404	ENSSHAG00000018908	-	75	45.892	Sarcophilus_harrisii
FBgn0037081	barc	62	43.678	ENSSFOG00015012002	htatsf1	74	43.678	Scleropages_formosus
FBgn0037081	barc	63	46.779	ENSSMAG00000002970	htatsf1	78	46.240	Scophthalmus_maximus
FBgn0037081	barc	60	43.768	ENSSDUG00000020002	htatsf1	94	42.643	Seriola_dumerili
FBgn0037081	barc	65	43.316	ENSSLDG00000016880	htatsf1	84	44.241	Seriola_lalandi_dorsalis
FBgn0037081	barc	68	44.241	ENSSPUG00000014767	HTATSF1	82	43.455	Sphenodon_punctatus
FBgn0037081	barc	65	45.257	ENSSPAG00000000732	htatsf1	80	45.257	Stegastes_partitus
FBgn0037081	barc	63	45.915	ENSTGUG00000002099	HTATSF1	82	43.717	Taeniopygia_guttata
FBgn0037081	barc	64	45.000	ENSTRUG00000013383	htatsf1	80	45.739	Takifugu_rubripes
FBgn0037081	barc	64	45.682	ENSTNIG00000016140	htatsf1	81	45.682	Tetraodon_nigroviridis
FBgn0037081	barc	57	45.912	ENSTTRG00000002269	HTATSF1	52	45.794	Tursiops_truncatus
FBgn0037081	barc	67	43.979	ENSXETG00000019749	htatsf1	70	43.236	Xenopus_tropicalis
FBgn0037081	barc	69	45.736	ENSXCOG00000006912	htatsf1	88	45.736	Xiphophorus_couchianus
FBgn0037081	barc	69	45.269	ENSXMAG00000000490	htatsf1	87	45.220	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005684	U2-type spliceosomal complex	21873635.	IBA	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0033120	positive regulation of RNA splicing	28935704.	IMP	Process
GO:0050767	regulation of neurogenesis	28935704.	IMP	Process
GO:1990447	U2 snRNP binding	28935704.	IDA	Function