EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0037549 (Gene tree)
Gene ID: 40959
Gene Symbol: CG7878
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 2549 bases
Position: chr3R:8122725-8125273
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0112117	KH_1	PF00013.29	2.9e-10	1	1
FBpp0112117	ResIII	PF04851.15	1.9e-05	1	1
FBpp0112117	DEAD	PF00270.29	3.4e-43	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0113205	-	2375	-	FBpp0112117	703 (aa)	-	Q7K4L8

Gene Model

Click here to download FBgn0037549's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0037549's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0037549	CG7878	53	34.771	FBgn0001942	eIF4A	90	35.121
FBgn0037549	CG7878	55	40.191	FBgn0032690	CG10333	50	40.191
FBgn0037549	CG7878	50	33.613	FBgn0004419	me31B	80	33.613
FBgn0037549	CG7878	64	38.581	FBgn0036104	CG6418	55	39.073
FBgn0037549	CG7878	61	34.389	FBgn0015331	abs	69	34.389
FBgn0037549	CG7878	50	31.768	FBgn0024804	Dbp80	78	31.768
FBgn0037549	CG7878	50	35.227	FBgn0032919	CG9253	67	35.227
FBgn0037549	CG7878	61	40.323	FBgn0283442	vas	58	41.624
FBgn0037549	CG7878	62	44.843	FBgn0035720	CG10077	76	44.149
FBgn0037549	CG7878	63	44.944	FBgn0003261	Rm62	95	40.265
FBgn0037549	CG7878	53	34.771	FBgn0037573	CG7483	89	35.215
FBgn0037549	CG7878	50	31.579	FBgn0266581	pit	52	31.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0037549	CG7878	88	46.000	ENSAPOG00000001712	ddx43	80	48.557	Acanthochromis_polyacanthus
FBgn0037549	CG7878	60	54.394	ENSACIG00000012170	ddx43	65	54.394	Amphilophus_citrinellus
FBgn0037549	CG7878	94	47.206	ENSAOCG00000001331	ddx43	91	47.206	Amphiprion_ocellaris
FBgn0037549	CG7878	90	48.183	ENSAPEG00000001133	ddx43	79	49.914	Amphiprion_percula
FBgn0037549	CG7878	96	46.893	ENSATEG00000012664	ddx43	88	48.287	Anabas_testudineus
FBgn0037549	CG7878	81	51.130	ENSAPLG00000010182	-	97	57.627	Anas_platyrhynchos
FBgn0037549	CG7878	86	49.091	ENSACAG00000004387	-	93	48.131	Anolis_carolinensis
FBgn0037549	CG7878	95	45.007	ENSACLG00000026081	ddx43	96	45.007	Astatotilapia_calliptera
FBgn0037549	CG7878	85	49.916	ENSAMXG00000004457	ddx43	92	47.384	Astyanax_mexicanus
FBgn0037549	CG7878	63	48.230	WBGene00013214	Y54G11A.3	88	48.230	Caenorhabditis_elegans
FBgn0037549	CG7878	55	38.974	ENSCSEG00000000532	ddx43	90	38.734	Cynoglossus_semilaevis
FBgn0037549	CG7878	82	43.193	ENSCVAG00000009980	ddx43	87	43.193	Cyprinodon_variegatus
FBgn0037549	CG7878	95	47.206	ENSDARG00000022614	ddx43	90	47.103	Danio_rerio
FBgn0037549	CG7878	66	40.733	ENSETEG00000014626	-	87	40.773	Echinops_telfairi
FBgn0037549	CG7878	87	48.710	ENSELUG00000012126	ddx43	90	48.710	Esox_lucius
FBgn0037549	CG7878	87	49.595	ENSFALG00000007042	-	92	48.602	Ficedula_albicollis
FBgn0037549	CG7878	66	56.009	ENSFHEG00000011226	ddx43	84	56.009	Fundulus_heteroclitus
FBgn0037549	CG7878	57	60.401	ENSGMOG00000004178	ddx43	86	60.401	Gadus_morhua
FBgn0037549	CG7878	61	58.430	ENSGALG00000015928	-	97	58.430	Gallus_gallus
FBgn0037549	CG7878	81	51.199	ENSGAFG00000012622	ddx43	81	51.199	Gambusia_affinis
FBgn0037549	CG7878	82	48.962	ENSGACG00000012072	ddx43	97	48.801	Gasterosteus_aculeatus
FBgn0037549	CG7878	63	59.009	ENSGAGG00000025230	-	69	59.142	Gopherus_agassizii
FBgn0037549	CG7878	83	48.810	ENSHBUG00000011653	ddx43	96	45.007	Haplochromis_burtoni
FBgn0037549	CG7878	67	56.077	ENSHCOG00000014704	ddx43	70	56.077	Hippocampus_comes
FBgn0037549	CG7878	89	49.209	ENSIPUG00000023423	ddx43	90	49.530	Ictalurus_punctatus
FBgn0037549	CG7878	90	48.044	ENSKMAG00000016167	ddx43	88	47.664	Kryptolebias_marmoratus
FBgn0037549	CG7878	96	46.444	ENSLBEG00000007913	ddx43	81	50.594	Labrus_bergylta
FBgn0037549	CG7878	63	56.136	ENSLACG00000000741	ddx43	89	56.136	Latimeria_chalumnae
FBgn0037549	CG7878	86	48.631	ENSLOCG00000016170	ddx43	87	49.344	Lepisosteus_oculatus
FBgn0037549	CG7878	93	44.901	ENSMAMG00000022128	ddx43	92	44.296	Mastacembelus_armatus
FBgn0037549	CG7878	95	45.007	ENSMZEG00005027349	ddx43	96	45.007	Maylandia_zebra
FBgn0037549	CG7878	83	49.828	ENSMGAG00000013832	-	96	49.828	Meleagris_gallopavo
FBgn0037549	CG7878	89	45.526	ENSMMOG00000007346	ddx43	88	46.047	Mola_mola
FBgn0037549	CG7878	84	47.421	ENSMODG00000018546	-	92	45.794	Monodelphis_domestica
FBgn0037549	CG7878	67	51.277	ENSMODG00000014335	-	80	51.277	Monodelphis_domestica
FBgn0037549	CG7878	90	47.752	ENSMALG00000020673	ddx43	89	47.738	Monopterus_albus
FBgn0037549	CG7878	95	44.853	ENSNBRG00000010942	ddx43	83	48.448	Neolamprologus_brichardi
FBgn0037549	CG7878	98	43.830	ENSONIG00000001195	ddx43	98	44.853	Oreochromis_niloticus
FBgn0037549	CG7878	55	48.469	ENSOANG00000006467	-	99	47.761	Ornithorhynchus_anatinus
FBgn0037549	CG7878	83	51.027	ENSORLG00000002267	ddx43	88	51.027	Oryzias_latipes
FBgn0037549	CG7878	83	51.027	ENSORLG00020018592	ddx43	88	51.027	Oryzias_latipes_hni
FBgn0037549	CG7878	83	50.856	ENSORLG00015004854	ddx43	87	50.856	Oryzias_latipes_hsok
FBgn0037549	CG7878	83	50.943	ENSOMEG00000023418	ddx43	88	50.943	Oryzias_melastigma
FBgn0037549	CG7878	87	48.548	ENSPKIG00000002941	ddx43	81	49.167	Paramormyrops_kingsleyae
FBgn0037549	CG7878	79	49.644	ENSPSIG00000002202	-	86	49.644	Pelodiscus_sinensis
FBgn0037549	CG7878	50	38.592	ENSPMGG00000019854	ddx43	78	41.026	Periophthalmus_magnuspinnatus
FBgn0037549	CG7878	61	57.639	ENSPCIG00000017981	-	97	57.639	Phascolarctos_cinereus
FBgn0037549	CG7878	72	47.421	ENSPCIG00000002492	-	79	47.421	Phascolarctos_cinereus
FBgn0037549	CG7878	83	50.683	ENSPFOG00000004241	ddx43	87	49.273	Poecilia_formosa
FBgn0037549	CG7878	83	50.856	ENSPLAG00000023362	ddx43	87	49.273	Poecilia_latipinna
FBgn0037549	CG7878	95	46.812	ENSPMEG00000004870	ddx43	87	49.273	Poecilia_mexicana
FBgn0037549	CG7878	73	50.097	ENSPREG00000000923	ddx43	75	50.097	Poecilia_reticulata
FBgn0037549	CG7878	66	54.176	ENSPNYG00000009064	ddx43	67	54.176	Pundamilia_nyererei
FBgn0037549	CG7878	86	51.236	ENSPNAG00000001232	ddx43	84	50.645	Pygocentrus_nattereri
FBgn0037549	CG7878	84	47.993	ENSSHAG00000001847	-	94	46.741	Sarcophilus_harrisii
FBgn0037549	CG7878	83	45.299	ENSSHAG00000016933	-	97	45.299	Sarcophilus_harrisii
FBgn0037549	CG7878	84	47.571	ENSSFOG00015012193	ddx43	86	48.330	Scleropages_formosus
FBgn0037549	CG7878	83	49.488	ENSSMAG00000019288	ddx43	88	47.328	Scophthalmus_maximus
FBgn0037549	CG7878	95	47.059	ENSSDUG00000020120	ddx43	94	47.033	Seriola_dumerili
FBgn0037549	CG7878	91	46.667	ENSSLDG00000017225	ddx43	87	46.718	Seriola_lalandi_dorsalis
FBgn0037549	CG7878	70	48.171	ENSSPUG00000018097	-	95	49.362	Sphenodon_punctatus
FBgn0037549	CG7878	83	48.288	ENSSPAG00000006858	ddx43	95	44.986	Stegastes_partitus
FBgn0037549	CG7878	84	50.000	ENSTGUG00000012684	-	97	50.000	Taeniopygia_guttata
FBgn0037549	CG7878	88	47.956	ENSTRUG00000012795	ddx43	90	47.956	Takifugu_rubripes
FBgn0037549	CG7878	84	47.973	ENSTNIG00000009822	ddx43	97	48.635	Tetraodon_nigroviridis
FBgn0037549	CG7878	93	46.526	ENSXETG00000011767	ddx43	95	46.526	Xenopus_tropicalis
FBgn0037549	CG7878	71	55.644	ENSXCOG00000013810	ddx43	76	55.644	Xiphophorus_couchianus
FBgn0037549	CG7878	87	48.553	ENSXMAG00000017126	ddx43	87	48.553	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0004386	helicase activity	10908586.	ISS	Function
GO:0005524	ATP binding	-	IEA	Function