EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0037643 (Gene tree)
Gene ID: 41067
Gene Symbol: skap
Alias: -
Full Name: skpA associated protein
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 4304
Position: chr3R: 8938724-8943027
Accession: FBgn0037643
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0334327	-	1901	-	FBpp0306436	451 (aa)	-	A0A0B4JCW4
FBtr0334328	-	1873	-	FBpp0306437	451 (aa)	-	A0A0B4JCW4
FBtr0113206	-	1764	-	FBpp0112118	502 (aa)	-	Q9VHJ8
FBtr0081957	-	1736	-	FBpp0081437	502 (aa)	-	Q9VHJ8
FBtr0347568	-	1904	-	FBpp0312600	452 (aa)	-	A0A126GUR6
FBtr0301786	-	1767	-	FBpp0291000	503 (aa)	-	Q95U38
FBtr0301787	-	1739	-	FBpp0291001	503 (aa)	-	Q95U38
FBtr0347567	-	1876	-	FBpp0312599	452 (aa)	-	A0A126GUR6

Gene Model

Click here to download FBgn0037643's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0037643's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0037643	skap	98	53.258	WBGene00009812	suca-1	99	53.258	Caenorhabditis_elegans
FBgn0037643	skap	87	51.010	WBGene00016844	sucg-1	95	51.010	Caenorhabditis_elegans

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004775	succinate-CoA ligase (ADP-forming) activity	-	ISS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005739	mitochondrion	19317464.	HDA	Component
GO:0005739	mitochondrion	27052834.	IDA	Component
GO:0006099	tricarboxylic acid cycle	-	ISS	Process
GO:0007291	sperm individualization	27052834.	IMP	Process
GO:0009361	succinate-CoA ligase complex (ADP-forming)	-	ISS	Component
GO:0031463	Cul3-RING ubiquitin ligase complex	27052834.	IDA	Component
GO:0043280	positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	27052834.	IMP	Process
GO:0046872	metal ion binding	-	IEA	Function