EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0038269 (Gene tree)
Gene ID: 41798
Gene Symbol: Rrp6
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 3749 bases
Position: chr3R:14882498-14886246
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0112147	HRDC	PF00570.23	5.3e-12	1	1
FBpp0311911	HRDC	PF00570.23	5.3e-12	1	1
FBpp0112147	PMC2NT	PF08066.12	4.2e-15	1	1
FBpp0311911	PMC2NT	PF08066.12	4.2e-15	1	1
FBpp0112147	DNA_pol_A_exo1	PF01612.20	1e-38	1	1
FBpp0311911	DNA_pol_A_exo1	PF01612.20	1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0346063	-	3233	-	FBpp0311911	900 (aa)	-	Q9VFF3
FBtr0113235	-	2988	-	FBpp0112147	900 (aa)	-	B3DN45

Gene Model

Click here to download FBgn0038269's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0038269's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0038269	Rrp6	63	41.196	ENSG00000171824	EXOSC10	68	41.196	Homo_sapiens
FBgn0038269	Rrp6	72	39.884	ENSAPOG00000013304	exosc10	76	40.854	Acanthochromis_polyacanthus
FBgn0038269	Rrp6	63	41.722	ENSAMEG00000009546	EXOSC10	66	41.722	Ailuropoda_melanoleuca
FBgn0038269	Rrp6	68	40.212	ENSACIG00000020455	exosc10	75	40.212	Amphilophus_citrinellus
FBgn0038269	Rrp6	66	40.902	ENSAOCG00000018823	exosc10	69	41.860	Amphiprion_ocellaris
FBgn0038269	Rrp6	72	39.738	ENSAPEG00000017786	exosc10	73	39.738	Amphiprion_percula
FBgn0038269	Rrp6	72	40.320	ENSATEG00000017271	exosc10	75	40.320	Anabas_testudineus
FBgn0038269	Rrp6	63	41.447	ENSAPLG00000006652	EXOSC10	64	42.114	Anas_platyrhynchos
FBgn0038269	Rrp6	57	42.987	ENSANAG00000031112	EXOSC10	65	42.805	Aotus_nancymaae
FBgn0038269	Rrp6	72	40.671	ENSACLG00000025226	exosc10	75	40.560	Astatotilapia_calliptera
FBgn0038269	Rrp6	92	34.677	ENSAMXG00000014510	exosc10	91	34.677	Astyanax_mexicanus
FBgn0038269	Rrp6	65	41.561	ENSBTAG00000002590	EXOSC10	87	41.561	Bos_taurus
FBgn0038269	Rrp6	70	31.976	WBGene00000796	crn-3	75	32.095	Caenorhabditis_elegans
FBgn0038269	Rrp6	63	41.128	ENSCJAG00000002327	EXOSC10	68	41.128	Callithrix_jacchus
FBgn0038269	Rrp6	66	41.139	ENSCAFG00000016721	EXOSC10	67	41.139	Canis_familiaris
FBgn0038269	Rrp6	66	41.139	ENSCAFG00020002481	EXOSC10	67	41.139	Canis_lupus_dingo
FBgn0038269	Rrp6	66	40.412	ENSCHIG00000020022	EXOSC10	73	40.412	Capra_hircus
FBgn0038269	Rrp6	58	43.116	ENSTSYG00000006937	EXOSC10	64	43.116	Carlito_syrichta
FBgn0038269	Rrp6	63	40.759	ENSCAPG00000006494	EXOSC10	68	41.667	Cavia_aperea
FBgn0038269	Rrp6	63	41.128	ENSCPOG00000011628	EXOSC10	68	41.196	Cavia_porcellus
FBgn0038269	Rrp6	88	34.670	ENSCCAG00000023223	EXOSC10	66	42.987	Cebus_capucinus
FBgn0038269	Rrp6	67	40.718	ENSCATG00000039000	EXOSC10	92	40.718	Cercocebus_atys
FBgn0038269	Rrp6	63	41.060	ENSCLAG00000005283	EXOSC10	68	41.060	Chinchilla_lanigera
FBgn0038269	Rrp6	63	41.694	ENSCSAG00000000788	EXOSC10	66	41.694	Chlorocebus_sabaeus
FBgn0038269	Rrp6	63	41.957	ENSCHOG00000012713	EXOSC10	67	41.957	Choloepus_hoffmanni
FBgn0038269	Rrp6	63	40.698	ENSCPBG00000022004	EXOSC10	66	40.698	Chrysemys_picta_bellii
FBgn0038269	Rrp6	63	38.715	ENSCSAVG00000009049	-	85	43.103	Ciona_savignyi
FBgn0038269	Rrp6	63	41.860	ENSCANG00000042813	EXOSC10	68	41.860	Colobus_angolensis_palliatus
FBgn0038269	Rrp6	66	40.348	ENSCGRG00001018469	Exosc10	71	40.348	Cricetulus_griseus_chok1gshd
FBgn0038269	Rrp6	66	40.506	ENSCGRG00000002278	Exosc10	71	40.506	Cricetulus_griseus_crigri
FBgn0038269	Rrp6	72	40.611	ENSCSEG00000005346	exosc10	73	40.611	Cynoglossus_semilaevis
FBgn0038269	Rrp6	72	39.971	ENSCVAG00000016429	exosc10	74	41.091	Cyprinodon_variegatus
FBgn0038269	Rrp6	72	37.807	ENSDARG00000037708	exosc10	73	37.807	Danio_rerio
FBgn0038269	Rrp6	63	41.625	ENSDNOG00000011301	EXOSC10	67	41.625	Dasypus_novemcinctus
FBgn0038269	Rrp6	63	41.694	ENSDORG00000003769	Exosc10	69	41.528	Dipodomys_ordii
FBgn0038269	Rrp6	60	42.907	ENSETEG00000000830	EXOSC10	95	34.724	Echinops_telfairi
FBgn0038269	Rrp6	52	35.551	ENSEBUG00000004395	exosc10	75	35.551	Eptatretus_burgeri
FBgn0038269	Rrp6	66	40.735	ENSEASG00005018716	EXOSC10	74	40.063	Equus_asinus_asinus
FBgn0038269	Rrp6	63	41.294	ENSECAG00000011639	EXOSC10	66	41.362	Equus_caballus
FBgn0038269	Rrp6	62	38.071	ENSEEUG00000001166	EXOSC10	64	37.955	Erinaceus_europaeus
FBgn0038269	Rrp6	66	41.308	ENSELUG00000012870	exosc10	74	41.447	Esox_lucius
FBgn0038269	Rrp6	66	40.348	ENSFCAG00000000052	EXOSC10	72	40.348	Felis_catus
FBgn0038269	Rrp6	63	42.928	ENSFALG00000010287	EXOSC10	65	42.928	Ficedula_albicollis
FBgn0038269	Rrp6	92	34.404	ENSFDAG00000002942	EXOSC10	91	34.404	Fukomys_damarensis
FBgn0038269	Rrp6	74	39.038	ENSFHEG00000010678	exosc10	77	39.038	Fundulus_heteroclitus
FBgn0038269	Rrp6	55	40.038	ENSGMOG00000006131	exosc10	64	40.038	Gadus_morhua
FBgn0038269	Rrp6	63	41.722	ENSGALG00000003086	EXOSC10	64	41.722	Gallus_gallus
FBgn0038269	Rrp6	72	39.213	ENSGAFG00000019222	exosc10	75	39.213	Gambusia_affinis
FBgn0038269	Rrp6	64	40.464	ENSGACG00000007037	exosc10	68	40.331	Gasterosteus_aculeatus
FBgn0038269	Rrp6	65	39.711	ENSGAGG00000000251	EXOSC10	67	39.711	Gopherus_agassizii
FBgn0038269	Rrp6	63	41.196	ENSGGOG00000010572	EXOSC10	68	41.362	Gorilla_gorilla
FBgn0038269	Rrp6	72	40.115	ENSHBUG00000020328	exosc10	77	40.115	Haplochromis_burtoni
FBgn0038269	Rrp6	63	41.128	ENSHGLG00000011944	EXOSC10	68	41.128	Heterocephalus_glaber_female
FBgn0038269	Rrp6	63	41.128	ENSHGLG00100014444	EXOSC10	68	41.128	Heterocephalus_glaber_male
FBgn0038269	Rrp6	72	39.683	ENSHCOG00000016164	exosc10	74	39.683	Hippocampus_comes
FBgn0038269	Rrp6	72	38.728	ENSIPUG00000021971	exosc10	64	41.157	Ictalurus_punctatus
FBgn0038269	Rrp6	63	42.289	ENSSTOG00000005459	EXOSC10	68	42.289	Ictidomys_tridecemlineatus
FBgn0038269	Rrp6	63	41.459	ENSJJAG00000013716	Exosc10	68	41.459	Jaculus_jaculus
FBgn0038269	Rrp6	72	39.067	ENSKMAG00000015540	exosc10	74	39.301	Kryptolebias_marmoratus
FBgn0038269	Rrp6	72	40.029	ENSLBEG00000022229	exosc10	74	40.029	Labrus_bergylta
FBgn0038269	Rrp6	93	33.788	ENSLACG00000016691	EXOSC10	91	34.130	Latimeria_chalumnae
FBgn0038269	Rrp6	97	35.363	ENSLOCG00000006443	exosc10	92	35.960	Lepisosteus_oculatus
FBgn0038269	Rrp6	63	41.625	ENSLAFG00000016894	EXOSC10	66	41.625	Loxodonta_africana
FBgn0038269	Rrp6	63	41.694	ENSMFAG00000038874	EXOSC10	68	41.694	Macaca_fascicularis
FBgn0038269	Rrp6	63	41.528	ENSMMUG00000019322	EXOSC10	68	41.528	Macaca_mulatta
FBgn0038269	Rrp6	63	41.694	ENSMNEG00000035812	EXOSC10	68	41.694	Macaca_nemestrina
FBgn0038269	Rrp6	63	41.694	ENSMLEG00000025160	EXOSC10	68	41.694	Mandrillus_leucophaeus
FBgn0038269	Rrp6	67	40.787	ENSMAMG00000019375	exosc10	70	40.787	Mastacembelus_armatus
FBgn0038269	Rrp6	72	40.671	ENSMZEG00005013730	exosc10	74	40.671	Maylandia_zebra
FBgn0038269	Rrp6	63	41.333	ENSMGAG00000004665	EXOSC10	65	41.768	Meleagris_gallopavo
FBgn0038269	Rrp6	64	40.457	ENSMAUG00000019261	Exosc10	97	40.325	Mesocricetus_auratus
FBgn0038269	Rrp6	83	36.712	ENSMICG00000003858	EXOSC10	92	36.319	Microcebus_murinus
FBgn0038269	Rrp6	64	41.379	ENSMOCG00000016509	Exosc10	96	41.379	Microtus_ochrogaster
FBgn0038269	Rrp6	68	40.310	ENSMMOG00000009265	exosc10	73	40.310	Mola_mola
FBgn0038269	Rrp6	92	35.436	ENSMODG00000011194	EXOSC10	90	35.436	Monodelphis_domestica
FBgn0038269	Rrp6	72	39.942	ENSMALG00000021322	exosc10	74	39.942	Monopterus_albus
FBgn0038269	Rrp6	96	34.242	MGP_CAROLIEiJ_G0026802	Exosc10	96	41.544	Mus_caroli
FBgn0038269	Rrp6	72	40.087	ENSMUSG00000017264	Exosc10	93	42.017	Mus_musculus
FBgn0038269	Rrp6	63	41.625	MGP_PahariEiJ_G0029150	Exosc10	93	41.849	Mus_pahari
FBgn0038269	Rrp6	72	40.087	MGP_SPRETEiJ_G0027795	Exosc10	93	42.017	Mus_spretus
FBgn0038269	Rrp6	63	42.289	ENSMPUG00000016434	EXOSC10	64	42.289	Mustela_putorius_furo
FBgn0038269	Rrp6	63	41.957	ENSMLUG00000004276	EXOSC10	66	41.957	Myotis_lucifugus
FBgn0038269	Rrp6	63	42.289	ENSNGAG00000023829	Exosc10	68	42.289	Nannospalax_galili
FBgn0038269	Rrp6	63	42.881	ENSNBRG00000006256	exosc10	68	42.881	Neolamprologus_brichardi
FBgn0038269	Rrp6	92	34.926	ENSNLEG00000009539	EXOSC10	69	41.528	Nomascus_leucogenys
FBgn0038269	Rrp6	69	40.030	ENSOPRG00000012091	EXOSC10	72	40.030	Ochotona_princeps
FBgn0038269	Rrp6	63	40.796	ENSODEG00000013285	EXOSC10	68	40.796	Octodon_degus
FBgn0038269	Rrp6	72	40.320	ENSONIG00000002322	exosc10	84	40.320	Oreochromis_niloticus
FBgn0038269	Rrp6	66	39.969	ENSOANG00000013322	EXOSC10	70	39.571	Ornithorhynchus_anatinus
FBgn0038269	Rrp6	69	40.545	ENSOCUG00000013039	EXOSC10	72	40.545	Oryctolagus_cuniculus
FBgn0038269	Rrp6	72	39.213	ENSORLG00000005117	exosc10	73	40.887	Oryzias_latipes
FBgn0038269	Rrp6	72	39.213	ENSORLG00020013529	exosc10	91	39.124	Oryzias_latipes_hni
FBgn0038269	Rrp6	72	38.897	ENSORLG00015005525	exosc10	75	38.897	Oryzias_latipes_hsok
FBgn0038269	Rrp6	92	34.932	ENSOMEG00000003337	exosc10	71	40.122	Oryzias_melastigma
FBgn0038269	Rrp6	63	39.073	ENSOGAG00000013662	EXOSC10	66	39.073	Otolemur_garnettii
FBgn0038269	Rrp6	95	33.887	ENSOARG00000003668	EXOSC10	69	40.063	Ovis_aries
FBgn0038269	Rrp6	63	41.196	ENSPPAG00000038356	EXOSC10	68	41.196	Pan_paniscus
FBgn0038269	Rrp6	66	40.348	ENSPPRG00000022976	EXOSC10	72	40.348	Panthera_pardus
FBgn0038269	Rrp6	66	40.254	ENSPTIG00000012735	EXOSC10	74	40.254	Panthera_tigris_altaica
FBgn0038269	Rrp6	63	38.833	ENSPTRG00000000140	EXOSC10	66	38.833	Pan_troglodytes
FBgn0038269	Rrp6	63	41.973	ENSPANG00000026088	EXOSC10	68	41.973	Papio_anubis
FBgn0038269	Rrp6	64	40.165	ENSPKIG00000013098	exosc10	64	40.165	Paramormyrops_kingsleyae
FBgn0038269	Rrp6	63	40.033	ENSPSIG00000005078	EXOSC10	65	40.033	Pelodiscus_sinensis
FBgn0038269	Rrp6	62	42.857	ENSPMGG00000022241	exosc10	96	42.857	Periophthalmus_magnuspinnatus
FBgn0038269	Rrp6	63	41.459	ENSPEMG00000007753	Exosc10	82	41.459	Peromyscus_maniculatus_bairdii
FBgn0038269	Rrp6	52	37.354	ENSPMAG00000006909	exosc10	95	37.854	Petromyzon_marinus
FBgn0038269	Rrp6	63	41.206	ENSPCIG00000004840	EXOSC10	89	40.972	Phascolarctos_cinereus
FBgn0038269	Rrp6	75	38.643	ENSPFOG00000004744	exosc10	78	38.643	Poecilia_formosa
FBgn0038269	Rrp6	75	38.504	ENSPLAG00000010253	exosc10	77	40.116	Poecilia_latipinna
FBgn0038269	Rrp6	75	38.504	ENSPMEG00000005740	exosc10	80	39.771	Poecilia_mexicana
FBgn0038269	Rrp6	72	40.029	ENSPREG00000016285	exosc10	78	40.615	Poecilia_reticulata
FBgn0038269	Rrp6	63	41.128	ENSPPYG00000001891	EXOSC10	64	41.128	Pongo_abelii
FBgn0038269	Rrp6	60	39.861	ENSPCAG00000001583	EXOSC10	59	44.467	Procavia_capensis
FBgn0038269	Rrp6	63	41.957	ENSPCOG00000013742	EXOSC10	68	42.027	Propithecus_coquereli
FBgn0038269	Rrp6	72	39.359	ENSPVAG00000014780	EXOSC10	75	39.359	Pteropus_vampyrus
FBgn0038269	Rrp6	72	40.671	ENSPNYG00000007387	exosc10	74	40.671	Pundamilia_nyererei
FBgn0038269	Rrp6	68	40.370	ENSPNAG00000028864	exosc10	68	40.370	Pygocentrus_nattereri
FBgn0038269	Rrp6	69	40.030	ENSRNOG00000010719	Exosc10	66	41.294	Rattus_norvegicus
FBgn0038269	Rrp6	63	38.796	ENSRBIG00000039772	EXOSC10	60	43.452	Rhinopithecus_bieti
FBgn0038269	Rrp6	63	41.860	ENSRROG00000036700	EXOSC10	68	41.860	Rhinopithecus_roxellana
FBgn0038269	Rrp6	63	39.799	ENSSBOG00000020768	EXOSC10	62	44.554	Saimiri_boliviensis_boliviensis
FBgn0038269	Rrp6	62	41.455	ENSSHAG00000013572	EXOSC10	66	41.146	Sarcophilus_harrisii
FBgn0038269	Rrp6	64	40.625	ENSSFOG00015004512	exosc10	68	40.625	Scleropages_formosus
FBgn0038269	Rrp6	72	39.650	ENSSMAG00000017318	exosc10	74	39.650	Scophthalmus_maximus
FBgn0038269	Rrp6	72	39.884	ENSSDUG00000006646	exosc10	74	39.884	Seriola_dumerili
FBgn0038269	Rrp6	72	39.213	ENSSLDG00000025554	exosc10	74	39.592	Seriola_lalandi_dorsalis
FBgn0038269	Rrp6	54	36.852	ENSSARG00000013171	EXOSC10	67	37.008	Sorex_araneus
FBgn0038269	Rrp6	64	40.984	ENSSPUG00000006844	EXOSC10	94	41.681	Sphenodon_punctatus
FBgn0038269	Rrp6	74	38.136	ENSSPAG00000007053	exosc10	76	38.136	Stegastes_partitus
FBgn0038269	Rrp6	57	43.273	ENSSSCG00000003412	EXOSC10	66	43.273	Sus_scrofa
FBgn0038269	Rrp6	63	42.289	ENSTGUG00000002231	EXOSC10	69	42.289	Taeniopygia_guttata
FBgn0038269	Rrp6	74	38.364	ENSTRUG00000012484	exosc10	75	38.364	Takifugu_rubripes
FBgn0038269	Rrp6	74	38.842	ENSTNIG00000015181	exosc10	78	38.842	Tetraodon_nigroviridis
FBgn0038269	Rrp6	63	41.362	ENSTTRG00000001320	EXOSC10	66	41.362	Tursiops_truncatus
FBgn0038269	Rrp6	63	41.556	ENSUAMG00000014404	EXOSC10	93	34.593	Ursus_americanus
FBgn0038269	Rrp6	92	35.094	ENSUMAG00000023413	EXOSC10	86	42.491	Ursus_maritimus
FBgn0038269	Rrp6	59	42.984	ENSVPAG00000004629	EXOSC10	60	43.303	Vicugna_pacos
FBgn0038269	Rrp6	57	43.194	ENSVVUG00000027116	EXOSC10	66	43.194	Vulpes_vulpes
FBgn0038269	Rrp6	63	37.291	ENSXETG00000006318	exosc10	70	36.422	Xenopus_tropicalis
FBgn0038269	Rrp6	72	39.213	ENSXCOG00000004665	exosc10	78	38.978	Xiphophorus_couchianus
FBgn0038269	Rrp6	72	39.683	ENSXMAG00000011246	exosc10	74	39.683	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000176	nuclear exosome (RNase complex)	12490954.	IDA	Component
GO:0000176	nuclear exosome (RNase complex)	12490954.	ISS	Component
GO:0000278	mitotic cell cycle	19225159.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	16407406.	IDA	Component
GO:0005652	nuclear lamina	16407406.	IDA	Component
GO:0005730	nucleolus	16407406.	IDA	Component
GO:0006378	mRNA polyadenylation	19364924.	IMP	Process
GO:0007059	chromosome segregation	19225159.	IMP	Process
GO:0008408	3'-5' exonuclease activity	-	IEA	Function
GO:0010468	regulation of gene expression	20185544.	IMP	Process
GO:0051607	defense response to virus	27474443.	IMP	Process
GO:0071027	nuclear RNA surveillance	19687295.	IMP	Process