EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0038344 (Gene tree)
Gene ID: 41891
Gene Symbol: obe
Alias: -
Full Name: obelus
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 7261 bases
Position: chr3R:15486050-15493310
Accession: FBgn0038344
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0082601	ResIII	PF04851.15	1.4e-25	1	2
FBpp0082601	ResIII	PF04851.15	1.4e-25	2	2
FBpp0082601	DEAD	PF00270.29	4.6e-53	1	2
FBpp0082601	DEAD	PF00270.29	4.6e-53	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0083147	-	6970	-	FBpp0082601	2183 (aa)	-	Q961L2

Gene Model

Click here to download FBgn0038344's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0038344's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0038344	obe	80	40.991	FBgn0263599	l(3)72Ab	85	39.155

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0038344	obe	89	54.342	ENSG00000112249	ASCC3	89	54.209	Homo_sapiens
FBgn0038344	obe	99	50.586	ENSAMEG00000014749	ASCC3	90	54.061	Ailuropoda_melanoleuca
FBgn0038344	obe	89	53.251	ENSACIG00000004551	ascc3	89	53.456	Amphilophus_citrinellus
FBgn0038344	obe	99	51.016	ENSAOCG00000005106	ascc3	99	51.083	Amphiprion_ocellaris
FBgn0038344	obe	89	54.954	ENSAPEG00000006181	ascc3	93	54.954	Amphiprion_percula
FBgn0038344	obe	99	51.237	ENSATEG00000024950	ascc3	99	51.240	Anabas_testudineus
FBgn0038344	obe	88	55.188	ENSAPLG00000012589	-	99	55.188	Anas_platyrhynchos
FBgn0038344	obe	99	50.428	ENSACAG00000010080	ASCC3	88	54.462	Anolis_carolinensis
FBgn0038344	obe	99	50.180	ENSANAG00000021476	ASCC3	89	54.162	Aotus_nancymaae
FBgn0038344	obe	85	55.828	ENSACLG00000006736	ascc3	96	56.147	Astatotilapia_calliptera
FBgn0038344	obe	99	48.922	ENSAMXG00000001395	ascc3	87	53.013	Astyanax_mexicanus
FBgn0038344	obe	89	54.619	ENSBTAG00000020482	ASCC3	89	54.518	Bos_taurus
FBgn0038344	obe	90	44.157	WBGene00013189	Y54E2A.4	99	43.029	Caenorhabditis_elegans
FBgn0038344	obe	99	50.248	ENSCJAG00000001507	ASCC3	91	54.084	Callithrix_jacchus
FBgn0038344	obe	89	54.767	ENSCAFG00000003554	ASCC3	89	54.665	Canis_familiaris
FBgn0038344	obe	89	54.767	ENSCAFG00020016899	ASCC3	89	54.665	Canis_lupus_dingo
FBgn0038344	obe	89	54.564	ENSCHIG00000023605	ASCC3	89	54.462	Capra_hircus
FBgn0038344	obe	80	57.230	ENSTSYG00000006324	ASCC3	87	57.064	Carlito_syrichta
FBgn0038344	obe	80	56.889	ENSCAPG00000010888	ASCC3	89	56.685	Cavia_aperea
FBgn0038344	obe	99	49.752	ENSCPOG00000013989	ASCC3	89	53.600	Cavia_porcellus
FBgn0038344	obe	99	50.271	ENSCCAG00000024230	ASCC3	89	54.162	Cebus_capucinus
FBgn0038344	obe	89	54.416	ENSCATG00000011281	ASCC3	89	54.283	Cercocebus_atys
FBgn0038344	obe	89	54.135	ENSCLAG00000009794	ASCC3	89	54.135	Chinchilla_lanigera
FBgn0038344	obe	89	54.365	ENSCSAG00000014674	ASCC3	89	54.232	Chlorocebus_sabaeus
FBgn0038344	obe	74	60.566	ENSCHOG00000002063	ASCC3	67	60.566	Choloepus_hoffmanni
FBgn0038344	obe	88	54.587	ENSCPBG00000003881	ASCC3	87	54.406	Chrysemys_picta_bellii
FBgn0038344	obe	82	54.972	ENSCSAVG00000007670	-	100	62.736	Ciona_savignyi
FBgn0038344	obe	89	54.342	ENSCANG00000004215	ASCC3	89	54.209	Colobus_angolensis_palliatus
FBgn0038344	obe	89	54.490	ENSCGRG00001000918	Ascc3	88	54.490	Cricetulus_griseus_chok1gshd
FBgn0038344	obe	89	54.490	ENSCGRG00000012933	Ascc3	88	54.490	Cricetulus_griseus_crigri
FBgn0038344	obe	97	51.859	ENSCSEG00000012811	ascc3	96	51.859	Cynoglossus_semilaevis
FBgn0038344	obe	99	49.548	ENSCVAG00000013014	ascc3	99	49.458	Cyprinodon_variegatus
FBgn0038344	obe	91	52.341	ENSDARG00000086678	ascc3	99	65.424	Danio_rerio
FBgn0038344	obe	75	58.495	ENSDNOG00000010279	ASCC3	99	58.495	Dasypus_novemcinctus
FBgn0038344	obe	89	54.268	ENSDORG00000008572	Ascc3	88	54.167	Dipodomys_ordii
FBgn0038344	obe	72	70.358	ENSETEG00000010694	-	58	70.358	Echinops_telfairi
FBgn0038344	obe	52	62.136	ENSEBUG00000007355	-	99	62.136	Eptatretus_burgeri
FBgn0038344	obe	99	50.745	ENSEASG00005006324	ASCC3	89	54.615	Equus_asinus_asinus
FBgn0038344	obe	99	50.700	ENSECAG00000012013	ASCC3	89	54.564	Equus_caballus
FBgn0038344	obe	86	57.521	ENSEEUG00000009748	ASCC3	93	57.521	Erinaceus_europaeus
FBgn0038344	obe	99	56.296	ENSELUG00000023441	ascc3	99	56.296	Esox_lucius
FBgn0038344	obe	89	54.688	ENSFCAG00000031266	ASCC3	89	54.587	Felis_catus
FBgn0038344	obe	89	54.671	ENSFALG00000005260	ASCC3	88	54.592	Ficedula_albicollis
FBgn0038344	obe	99	50.000	ENSFDAG00000011358	ASCC3	89	53.702	Fukomys_damarensis
FBgn0038344	obe	99	50.450	ENSFHEG00000019247	ascc3	99	50.450	Fundulus_heteroclitus
FBgn0038344	obe	93	52.935	ENSGMOG00000018158	ascc3	88	55.231	Gadus_morhua
FBgn0038344	obe	89	54.397	ENSGALG00000015465	ASCC3	88	54.420	Gallus_gallus
FBgn0038344	obe	97	51.607	ENSGACG00000014141	ascc3	99	50.653	Gasterosteus_aculeatus
FBgn0038344	obe	90	52.293	ENSGAGG00000020794	ASCC3	96	56.823	Gopherus_agassizii
FBgn0038344	obe	89	54.361	ENSGGOG00000002790	ASCC3	89	54.228	Gorilla_gorilla
FBgn0038344	obe	90	50.632	ENSHBUG00000015110	ascc3	83	56.682	Haplochromis_burtoni
FBgn0038344	obe	89	53.983	ENSHGLG00000002093	ASCC3	88	54.065	Heterocephalus_glaber_female
FBgn0038344	obe	90	52.674	ENSHGLG00100005896	ASCC3	89	52.754	Heterocephalus_glaber_male
FBgn0038344	obe	99	50.563	ENSHCOG00000021142	ascc3	97	51.484	Hippocampus_comes
FBgn0038344	obe	99	51.106	ENSIPUG00000013863	ascc3	88	55.176	Ictalurus_punctatus
FBgn0038344	obe	89	53.350	ENSSTOG00000006645	ASCC3	89	53.327	Ictidomys_tridecemlineatus
FBgn0038344	obe	89	53.678	ENSJJAG00000022570	Ascc3	88	53.831	Jaculus_jaculus
FBgn0038344	obe	99	51.517	ENSKMAG00000003953	ascc3	98	51.403	Kryptolebias_marmoratus
FBgn0038344	obe	85	55.818	ENSLBEG00000009623	ascc3	99	55.818	Labrus_bergylta
FBgn0038344	obe	75	54.094	ENSLACG00000015253	ascc3	99	54.094	Latimeria_chalumnae
FBgn0038344	obe	99	50.697	ENSLOCG00000016550	ascc3	87	54.708	Lepisosteus_oculatus
FBgn0038344	obe	69	57.914	ENSLAFG00000011363	ASCC3	75	57.914	Loxodonta_africana
FBgn0038344	obe	89	54.365	ENSMFAG00000002081	ASCC3	89	54.232	Macaca_fascicularis
FBgn0038344	obe	89	54.365	ENSMMUG00000022287	ASCC3	89	54.232	Macaca_mulatta
FBgn0038344	obe	89	54.365	ENSMNEG00000032760	ASCC3	89	54.232	Macaca_nemestrina
FBgn0038344	obe	89	53.647	ENSMLEG00000035241	ASCC3	89	53.515	Mandrillus_leucophaeus
FBgn0038344	obe	89	55.209	ENSMAMG00000005917	ascc3	99	51.222	Mastacembelus_armatus
FBgn0038344	obe	76	59.409	ENSMZEG00005002710	ascc3	73	59.794	Maylandia_zebra
FBgn0038344	obe	89	54.152	ENSMGAG00000013551	ASCC3	88	54.152	Meleagris_gallopavo
FBgn0038344	obe	89	54.490	ENSMAUG00000018304	Ascc3	88	54.388	Mesocricetus_auratus
FBgn0038344	obe	89	54.518	ENSMICG00000008861	ASCC3	88	54.620	Microcebus_murinus
FBgn0038344	obe	89	54.313	ENSMOCG00000004549	Ascc3	88	54.211	Microtus_ochrogaster
FBgn0038344	obe	89	53.218	ENSMMOG00000003198	ascc3	91	53.269	Mola_mola
FBgn0038344	obe	91	54.092	ENSMODG00000018082	ASCC3	90	54.092	Monodelphis_domestica
FBgn0038344	obe	89	53.803	ENSMALG00000015536	ascc3	91	53.803	Monopterus_albus
FBgn0038344	obe	91	53.550	MGP_CAROLIEiJ_G0015302	Ascc3	90	53.550	Mus_caroli
FBgn0038344	obe	91	53.550	ENSMUSG00000038774	Ascc3	90	53.550	Mus_musculus
FBgn0038344	obe	91	53.600	MGP_SPRETEiJ_G0016111	Ascc3	90	53.600	Mus_spretus
FBgn0038344	obe	89	54.638	ENSMPUG00000001675	ASCC3	89	54.582	Mustela_putorius_furo
FBgn0038344	obe	99	50.587	ENSMLUG00000002886	ASCC3	89	54.462	Myotis_lucifugus
FBgn0038344	obe	89	54.112	ENSNGAG00000000702	Ascc3	88	54.061	Nannospalax_galili
FBgn0038344	obe	80	62.559	ENSNBRG00000022083	ascc3	86	49.684	Neolamprologus_brichardi
FBgn0038344	obe	89	54.260	ENSNLEG00000013890	ASCC3	89	54.209	Nomascus_leucogenys
FBgn0038344	obe	78	75.439	ENSMEUG00000003061	ASCC3	62	75.439	Notamacropus_eugenii
FBgn0038344	obe	67	68.085	ENSOPRG00000010249	-	56	68.085	Ochotona_princeps
FBgn0038344	obe	89	54.031	ENSODEG00000000069	ASCC3	88	54.031	Octodon_degus
FBgn0038344	obe	99	50.676	ENSONIG00000016540	ascc3	99	50.631	Oreochromis_niloticus
FBgn0038344	obe	97	51.071	ENSOANG00000008944	ASCC3	90	53.111	Ornithorhynchus_anatinus
FBgn0038344	obe	89	54.499	ENSOCUG00000002766	ASCC3	88	54.392	Oryctolagus_cuniculus
FBgn0038344	obe	85	55.774	ENSORLG00000004221	ascc3	95	53.476	Oryzias_latipes
FBgn0038344	obe	85	55.774	ENSORLG00020022595	ascc3	96	55.828	Oryzias_latipes_hni
FBgn0038344	obe	85	55.881	ENSORLG00015009231	ascc3	96	53.541	Oryzias_latipes_hsok
FBgn0038344	obe	99	50.856	ENSOMEG00000019630	ascc3	91	53.663	Oryzias_melastigma
FBgn0038344	obe	88	51.476	ENSOGAG00000009875	ASCC3	85	55.725	Otolemur_garnettii
FBgn0038344	obe	89	54.513	ENSOARG00000011627	ASCC3	89	54.412	Ovis_aries
FBgn0038344	obe	99	50.293	ENSPPAG00000030772	ASCC3	89	54.209	Pan_paniscus
FBgn0038344	obe	89	54.638	ENSPPRG00000011358	ASCC3	89	54.536	Panthera_pardus
FBgn0038344	obe	89	54.587	ENSPTIG00000006331	ASCC3	89	54.486	Panthera_tigris_altaica
FBgn0038344	obe	89	54.292	ENSPTRG00000018448	ASCC3	89	54.158	Pan_troglodytes
FBgn0038344	obe	89	54.365	ENSPANG00000006307	ASCC3	89	54.232	Papio_anubis
FBgn0038344	obe	99	50.881	ENSPKIG00000013639	ascc3	89	54.559	Paramormyrops_kingsleyae
FBgn0038344	obe	77	55.150	ENSPSIG00000002620	-	95	55.150	Pelodiscus_sinensis
FBgn0038344	obe	89	53.987	ENSPEMG00000015319	Ascc3	89	53.885	Peromyscus_maniculatus_bairdii
FBgn0038344	obe	70	61.424	ENSPMAG00000002163	-	100	61.424	Petromyzon_marinus
FBgn0038344	obe	89	55.187	ENSPCIG00000017288	ASCC3	88	55.135	Phascolarctos_cinereus
FBgn0038344	obe	92	53.642	ENSPFOG00000001462	ascc3	98	53.517	Poecilia_formosa
FBgn0038344	obe	99	51.132	ENSPREG00000017616	ascc3	99	50.929	Poecilia_reticulata
FBgn0038344	obe	89	53.608	ENSPPYG00000016869	ASCC3	88	53.475	Pongo_abelii
FBgn0038344	obe	88	52.297	ENSPCAG00000008834	ASCC3	85	52.297	Procavia_capensis
FBgn0038344	obe	89	50.634	ENSPVAG00000012827	ASCC3	89	50.507	Pteropus_vampyrus
FBgn0038344	obe	85	55.668	ENSPNYG00000018913	ascc3	96	55.987	Pundamilia_nyererei
FBgn0038344	obe	85	56.200	ENSPNAG00000016413	ascc3	96	56.270	Pygocentrus_nattereri
FBgn0038344	obe	89	54.342	ENSRNOG00000037604	Ascc3	89	54.342	Rattus_norvegicus
FBgn0038344	obe	89	54.444	ENSRROG00000045402	ASCC3	89	54.310	Rhinopithecus_roxellana
FBgn0038344	obe	80	44.944	YGR271W	-	88	44.888	Saccharomyces_cerevisiae
FBgn0038344	obe	99	50.225	ENSSBOG00000025142	ASCC3	89	54.112	Saimiri_boliviensis_boliviensis
FBgn0038344	obe	89	54.648	ENSSHAG00000016496	ASCC3	88	54.750	Sarcophilus_harrisii
FBgn0038344	obe	99	50.338	ENSSFOG00015010273	ascc3	88	54.434	Scleropages_formosus
FBgn0038344	obe	99	50.719	ENSSMAG00000012927	ascc3	99	50.674	Scophthalmus_maximus
FBgn0038344	obe	99	51.039	ENSSDUG00000010897	ascc3	99	51.039	Seriola_dumerili
FBgn0038344	obe	99	50.788	ENSSLDG00000021782	ascc3	99	51.016	Seriola_lalandi_dorsalis
FBgn0038344	obe	98	49.373	ENSSARG00000001858	ASCC3	80	50.818	Sorex_araneus
FBgn0038344	obe	89	54.235	ENSSPUG00000001842	ASCC3	88	54.207	Sphenodon_punctatus
FBgn0038344	obe	99	51.057	ENSSPAG00000007677	ascc3	99	50.993	Stegastes_partitus
FBgn0038344	obe	91	54.214	ENSSSCG00000004358	ASCC3	99	54.115	Sus_scrofa
FBgn0038344	obe	89	54.527	ENSTGUG00000012262	ASCC3	98	54.499	Taeniopygia_guttata
FBgn0038344	obe	98	53.456	ENSTNIG00000005079	ascc3	99	49.063	Tetraodon_nigroviridis
FBgn0038344	obe	77	65.672	ENSTBEG00000015236	ASCC3	70	65.672	Tupaia_belangeri
FBgn0038344	obe	89	56.025	ENSTTRG00000008255	ASCC3	85	55.888	Tursiops_truncatus
FBgn0038344	obe	68	61.059	ENSUAMG00000023340	-	98	61.059	Ursus_americanus
FBgn0038344	obe	89	53.873	ENSUMAG00000021200	ASCC3	89	53.772	Ursus_maritimus
FBgn0038344	obe	89	52.816	ENSVPAG00000001408	ASCC3	88	52.685	Vicugna_pacos
FBgn0038344	obe	99	50.699	ENSVVUG00000015397	ASCC3	89	54.716	Vulpes_vulpes
FBgn0038344	obe	78	53.274	ENSXETG00000032212	-	98	53.274	Xenopus_tropicalis
FBgn0038344	obe	99	50.994	ENSXMAG00000000071	ascc3	99	50.970	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	26644515.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004386	helicase activity	10908586.	ISS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005682	U5 snRNP	10908584.	ISS	Component
GO:0006307	DNA dealkylation involved in DNA repair	21873635.	IBA	Process
GO:0008026	ATP-dependent helicase activity	21873635.	IBA	Function
GO:0030532	small nuclear ribonucleoprotein complex	10908584.	ISS	Component
GO:0034332	adherens junction organization	26644515.	IMP	Process
GO:0043140	ATP-dependent 3'-5' DNA helicase activity	21873635.	IBA	Function
GO:0051642	centrosome localization	26644515.	IMP	Process