EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0038345 (Gene tree)
Gene ID: 41892
Gene Symbol: CG5213
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 1019 bases
Position: chr3R:15494602-15495620
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0082602	RRM_5	PF13893.6	8.8e-07	1	1
FBpp0082602	RRM_1	PF00076.22	1.8e-37	1	2
FBpp0082602	RRM_1	PF00076.22	1.8e-37	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0083148	-	1019	-	FBpp0082602	251 (aa)	-	Q9VF55

Gene Model

Click here to download FBgn0038345's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0038345's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0038345	CG5213	66	35.000	FBgn0086675	fne	51	35.000
FBgn0038345	CG5213	70	40.571	FBgn0264270	Sxl	61	38.542

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0038345	CG5213	76	34.555	ENSCSAVG00000009321	-	66	40.000	Ciona_savignyi

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process