EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0038704 (Gene tree)
Gene ID: 42322
Gene Symbol: CG5316
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 2840 bases
Position: chr3R:19403455-19406294
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0083172	DcpS_C	PF11969.8	2.9e-49	1	2
FBpp0083172	DcpS_C	PF11969.8	2.9e-49	2	2
FBpp0083174	DcpS_C	PF11969.8	2.9e-49	1	2
FBpp0083174	DcpS_C	PF11969.8	2.9e-49	2	2
FBpp0083173	DcpS_C	PF11969.8	5.6e-30	1	1
FBpp0401601	DcpS_C	PF11969.8	3.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0083760	-	2483	-	FBpp0083174	662 (aa)	-	Q8MSG8
FBtr0083758	-	2376	-	FBpp0083172	662 (aa)	-	Q8MSG8
FBtr0083759	-	2610	-	FBpp0083173	139 (aa)	-	Q8MSG8-4
FBtr0445726	-	2553	-	FBpp0401601	443 (aa)	-	A0A1Z1CGZ3

Gene Model

Click here to download FBgn0038704's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0038704's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0038704	CG5316	87	47.541	ENSG00000137074	APTX	64	40.449	Homo_sapiens
FBgn0038704	CG5316	87	41.803	ENSAPOG00000008785	aptx	53	37.989	Acanthochromis_polyacanthus
FBgn0038704	CG5316	87	45.902	ENSAMEG00000007648	APTX	50	39.888	Ailuropoda_melanoleuca
FBgn0038704	CG5316	79	44.144	ENSACIG00000002035	aptx	53	39.394	Amphilophus_citrinellus
FBgn0038704	CG5316	87	41.803	ENSAOCG00000000634	aptx	53	38.068	Amphiprion_ocellaris
FBgn0038704	CG5316	87	41.803	ENSAPEG00000017253	aptx	53	38.068	Amphiprion_percula
FBgn0038704	CG5316	87	41.803	ENSATEG00000017383	aptx	53	37.989	Anabas_testudineus
FBgn0038704	CG5316	87	47.107	ENSAPLG00000015645	APTX	56	40.805	Anas_platyrhynchos
FBgn0038704	CG5316	87	47.541	ENSANAG00000030160	APTX	59	40.449	Aotus_nancymaae
FBgn0038704	CG5316	87	42.623	ENSACLG00000018887	aptx	53	38.636	Astatotilapia_calliptera
FBgn0038704	CG5316	87	45.082	ENSAMXG00000039899	aptx	51	40.341	Astyanax_mexicanus
FBgn0038704	CG5316	87	47.541	ENSBTAG00000013947	APTX	52	40.449	Bos_taurus
FBgn0038704	CG5316	87	46.721	ENSCJAG00000007940	APTX	59	40.000	Callithrix_jacchus
FBgn0038704	CG5316	87	45.082	ENSCAFG00000001812	APTX	52	39.326	Canis_familiaris
FBgn0038704	CG5316	87	45.082	ENSCAFG00020015598	APTX	52	39.326	Canis_lupus_dingo
FBgn0038704	CG5316	87	47.541	ENSCHIG00000012896	APTX	54	40.449	Capra_hircus
FBgn0038704	CG5316	87	49.180	ENSTSYG00000003041	APTX	63	41.714	Carlito_syrichta
FBgn0038704	CG5316	83	47.863	ENSCAPG00000013470	APTX	84	40.588	Cavia_aperea
FBgn0038704	CG5316	87	47.541	ENSCPOG00000005975	APTX	73	40.571	Cavia_porcellus
FBgn0038704	CG5316	87	47.541	ENSCCAG00000036783	APTX	62	40.449	Cebus_capucinus
FBgn0038704	CG5316	87	48.361	ENSCATG00000042639	APTX	62	41.011	Cercocebus_atys
FBgn0038704	CG5316	87	46.721	ENSCLAG00000012185	APTX	75	40.571	Chinchilla_lanigera
FBgn0038704	CG5316	87	47.541	ENSCSAG00000009885	APTX	50	40.449	Chlorocebus_sabaeus
FBgn0038704	CG5316	87	47.541	ENSCANG00000037253	APTX	62	40.449	Colobus_angolensis_palliatus
FBgn0038704	CG5316	87	46.721	ENSCGRG00001000705	Aptx	75	40.000	Cricetulus_griseus_chok1gshd
FBgn0038704	CG5316	87	46.721	ENSCGRG00000014159	Aptx	75	40.000	Cricetulus_griseus_crigri
FBgn0038704	CG5316	87	42.623	ENSCSEG00000009549	aptx	55	38.636	Cynoglossus_semilaevis
FBgn0038704	CG5316	87	44.262	ENSCVAG00000011942	aptx	53	40.341	Cyprinodon_variegatus
FBgn0038704	CG5316	87	44.262	ENSDARG00000027143	aptx	54	40.341	Danio_rerio
FBgn0038704	CG5316	87	47.541	ENSDNOG00000018498	APTX	50	40.449	Dasypus_novemcinctus
FBgn0038704	CG5316	92	47.287	ENSDORG00000002139	Aptx	74	40.000	Dipodomys_ordii
FBgn0038704	CG5316	87	47.541	ENSETEG00000012459	APTX	50	40.571	Echinops_telfairi
FBgn0038704	CG5316	87	48.361	ENSEASG00005004566	APTX	52	41.011	Equus_asinus_asinus
FBgn0038704	CG5316	87	47.541	ENSFCAG00000008728	APTX	59	41.011	Felis_catus
FBgn0038704	CG5316	87	47.541	ENSFALG00000001230	APTX	51	41.143	Ficedula_albicollis
FBgn0038704	CG5316	87	47.541	ENSFDAG00000013752	APTX	75	40.571	Fukomys_damarensis
FBgn0038704	CG5316	87	43.089	ENSGMOG00000012505	aptx	53	38.983	Gadus_morhua
FBgn0038704	CG5316	87	47.541	ENSGALG00000001954	APTX	51	40.571	Gallus_gallus
FBgn0038704	CG5316	87	44.262	ENSGAFG00000005086	aptx	53	40.341	Gambusia_affinis
FBgn0038704	CG5316	87	42.623	ENSGACG00000017887	aptx	52	38.636	Gasterosteus_aculeatus
FBgn0038704	CG5316	87	42.623	ENSGAGG00000013230	APTX	50	38.286	Gopherus_agassizii
FBgn0038704	CG5316	92	45.736	ENSGGOG00000014232	APTX	52	47.541	Gorilla_gorilla
FBgn0038704	CG5316	87	42.623	ENSHBUG00000021058	aptx	53	38.636	Haplochromis_burtoni
FBgn0038704	CG5316	87	47.541	ENSHGLG00000015093	APTX	75	40.571	Heterocephalus_glaber_female
FBgn0038704	CG5316	87	47.541	ENSHGLG00100013482	APTX	75	40.571	Heterocephalus_glaber_male
FBgn0038704	CG5316	87	45.082	ENSHCOG00000018216	aptx	55	40.341	Hippocampus_comes
FBgn0038704	CG5316	87	44.262	ENSIPUG00000017548	aptx	53	40.571	Ictalurus_punctatus
FBgn0038704	CG5316	87	47.541	ENSSTOG00000005185	APTX	75	40.571	Ictidomys_tridecemlineatus
FBgn0038704	CG5316	87	45.082	ENSJJAG00000015653	Aptx	55	37.143	Jaculus_jaculus
FBgn0038704	CG5316	87	42.623	ENSKMAG00000000117	aptx	53	38.418	Kryptolebias_marmoratus
FBgn0038704	CG5316	87	33.333	ENSLBEG00000021489	APTX	72	34.416	Labrus_bergylta
FBgn0038704	CG5316	87	42.623	ENSLBEG00000015353	aptx	73	41.139	Labrus_bergylta
FBgn0038704	CG5316	87	44.628	ENSLACG00000003376	APTX	50	41.143	Latimeria_chalumnae
FBgn0038704	CG5316	87	48.361	ENSLAFG00000005665	APTX	51	41.011	Loxodonta_africana
FBgn0038704	CG5316	87	47.541	ENSMFAG00000043141	APTX	51	40.449	Macaca_fascicularis
FBgn0038704	CG5316	87	47.541	ENSMMUG00000007724	APTX	51	40.449	Macaca_mulatta
FBgn0038704	CG5316	87	48.361	ENSMNEG00000042341	APTX	63	41.011	Macaca_nemestrina
FBgn0038704	CG5316	87	47.541	ENSMLEG00000035137	APTX	59	40.449	Mandrillus_leucophaeus
FBgn0038704	CG5316	87	43.443	ENSMAMG00000018377	aptx	53	39.106	Mastacembelus_armatus
FBgn0038704	CG5316	87	42.623	ENSMZEG00005022621	aptx	53	38.636	Maylandia_zebra
FBgn0038704	CG5316	87	46.721	ENSMGAG00000005736	APTX	100	40.000	Meleagris_gallopavo
FBgn0038704	CG5316	87	47.541	ENSMAUG00000006039	Aptx	75	40.571	Mesocricetus_auratus
FBgn0038704	CG5316	87	48.361	ENSMICG00000006603	APTX	60	41.011	Microcebus_murinus
FBgn0038704	CG5316	87	46.721	ENSMOCG00000000869	Aptx	75	40.000	Microtus_ochrogaster
FBgn0038704	CG5316	87	43.443	ENSMMOG00000007028	aptx	52	39.106	Mola_mola
FBgn0038704	CG5316	87	46.721	MGP_CAROLIEiJ_G0025897	-	75	40.571	Mus_caroli
FBgn0038704	CG5316	87	46.721	ENSMUSG00000028411	Aptx	75	40.571	Mus_musculus
FBgn0038704	CG5316	87	46.721	MGP_PahariEiJ_G0024020	Aptx	53	40.571	Mus_pahari
FBgn0038704	CG5316	87	46.721	MGP_SPRETEiJ_G0026846	Aptx	54	39.267	Mus_spretus
FBgn0038704	CG5316	87	48.361	ENSMPUG00000004290	APTX	52	41.714	Mustela_putorius_furo
FBgn0038704	CG5316	87	48.361	ENSMLUG00000016081	APTX	50	41.011	Myotis_lucifugus
FBgn0038704	CG5316	87	45.902	ENSNGAG00000016314	Aptx	75	39.429	Nannospalax_galili
FBgn0038704	CG5316	87	41.803	ENSNBRG00000014199	aptx	53	38.068	Neolamprologus_brichardi
FBgn0038704	CG5316	87	47.541	ENSNLEG00000032184	APTX	62	40.449	Nomascus_leucogenys
FBgn0038704	CG5316	87	42.623	ENSMEUG00000004153	APTX	50	37.714	Notamacropus_eugenii
FBgn0038704	CG5316	87	45.902	ENSODEG00000015832	-	75	39.429	Octodon_degus
FBgn0038704	CG5316	87	45.902	ENSODEG00000000097	-	66	39.429	Octodon_degus
FBgn0038704	CG5316	87	47.934	ENSOCUG00000025059	-	69	40.805	Oryctolagus_cuniculus
FBgn0038704	CG5316	87	47.934	ENSOCUG00000000738	-	50	40.805	Oryctolagus_cuniculus
FBgn0038704	CG5316	87	44.262	ENSORLG00000006237	aptx	53	42.045	Oryzias_latipes
FBgn0038704	CG5316	87	44.262	ENSORLG00020021478	aptx	53	41.477	Oryzias_latipes_hni
FBgn0038704	CG5316	87	43.902	ENSORLG00015021873	aptx	55	42.593	Oryzias_latipes_hsok
FBgn0038704	CG5316	87	47.541	ENSOGAG00000005388	APTX	51	39.888	Otolemur_garnettii
FBgn0038704	CG5316	87	47.541	ENSOARG00000009598	APTX	51	40.449	Ovis_aries
FBgn0038704	CG5316	87	46.721	ENSPPAG00000030295	APTX	51	40.113	Pan_paniscus
FBgn0038704	CG5316	87	47.541	ENSPPRG00000017524	APTX	59	41.011	Panthera_pardus
FBgn0038704	CG5316	87	47.541	ENSPTIG00000020000	APTX	59	41.011	Panthera_tigris_altaica
FBgn0038704	CG5316	87	46.721	ENSPTRG00000020850	APTX	62	39.888	Pan_troglodytes
FBgn0038704	CG5316	87	47.541	ENSPANG00000025301	APTX	59	40.449	Papio_anubis
FBgn0038704	CG5316	87	42.623	ENSPKIG00000013601	aptx	51	42.857	Paramormyrops_kingsleyae
FBgn0038704	CG5316	87	45.082	ENSPSIG00000010521	APTX	56	40.000	Pelodiscus_sinensis
FBgn0038704	CG5316	87	41.803	ENSPMGG00000018649	aptx	50	38.857	Periophthalmus_magnuspinnatus
FBgn0038704	CG5316	87	47.541	ENSPEMG00000007747	Aptx	75	41.143	Peromyscus_maniculatus_bairdii
FBgn0038704	CG5316	87	45.238	ENSPMAG00000008417	aptx	51	40.782	Petromyzon_marinus
FBgn0038704	CG5316	87	44.262	ENSPFOG00000005131	-	53	40.341	Poecilia_formosa
FBgn0038704	CG5316	87	44.262	ENSPFOG00000004992	aptx	53	40.341	Poecilia_formosa
FBgn0038704	CG5316	87	44.262	ENSPLAG00000007906	aptx	53	40.341	Poecilia_latipinna
FBgn0038704	CG5316	87	44.262	ENSPLAG00000007960	APTX	53	40.341	Poecilia_latipinna
FBgn0038704	CG5316	87	44.262	ENSPMEG00000018504	aptx	53	40.341	Poecilia_mexicana
FBgn0038704	CG5316	87	44.262	ENSPMEG00000019789	APTX	53	40.341	Poecilia_mexicana
FBgn0038704	CG5316	76	46.729	ENSPREG00000004375	aptx	52	43.226	Poecilia_reticulata
FBgn0038704	CG5316	87	47.541	ENSPPYG00000019142	APTX	50	40.449	Pongo_abelii
FBgn0038704	CG5316	91	47.244	ENSPCOG00000016780	APTX	53	41.011	Propithecus_coquereli
FBgn0038704	CG5316	87	42.623	ENSPNYG00000007675	aptx	53	38.636	Pundamilia_nyererei
FBgn0038704	CG5316	87	42.623	ENSPNAG00000015984	aptx	51	40.341	Pygocentrus_nattereri
FBgn0038704	CG5316	87	46.721	ENSRNOG00000006582	Aptx	54	40.571	Rattus_norvegicus
FBgn0038704	CG5316	87	47.541	ENSRBIG00000042913	APTX	59	40.449	Rhinopithecus_bieti
FBgn0038704	CG5316	87	47.541	ENSRROG00000035395	APTX	59	40.449	Rhinopithecus_roxellana
FBgn0038704	CG5316	87	47.541	ENSSBOG00000025215	APTX	52	40.449	Saimiri_boliviensis_boliviensis
FBgn0038704	CG5316	87	46.721	ENSSFOG00015009267	aptx	50	42.614	Scleropages_formosus
FBgn0038704	CG5316	87	43.443	ENSSMAG00000008839	aptx	53	39.665	Scophthalmus_maximus
FBgn0038704	CG5316	87	43.443	ENSSDUG00000001989	aptx	54	38.636	Seriola_dumerili
FBgn0038704	CG5316	87	42.623	ENSSLDG00000004915	aptx	53	38.068	Seriola_lalandi_dorsalis
FBgn0038704	CG5316	87	43.443	ENSSPAG00000020373	aptx	53	39.106	Stegastes_partitus
FBgn0038704	CG5316	87	46.721	ENSSSCG00000011001	APTX	52	40.000	Sus_scrofa
FBgn0038704	CG5316	87	48.800	ENSTGUG00000001441	APTX	52	42.135	Taeniopygia_guttata
FBgn0038704	CG5316	87	40.984	ENSTRUG00000009794	aptx	53	39.773	Takifugu_rubripes
FBgn0038704	CG5316	87	39.683	ENSTNIG00000010570	aptx	53	37.778	Tetraodon_nigroviridis
FBgn0038704	CG5316	91	45.669	ENSUAMG00000003700	APTX	51	40.449	Ursus_americanus
FBgn0038704	CG5316	87	46.721	ENSUMAG00000005837	APTX	52	40.449	Ursus_maritimus
FBgn0038704	CG5316	87	39.344	ENSVPAG00000001297	APTX	52	34.286	Vicugna_pacos
FBgn0038704	CG5316	92	43.411	ENSVVUG00000021130	APTX	52	39.326	Vulpes_vulpes
FBgn0038704	CG5316	87	41.803	ENSXETG00000024143	aptx	52	37.714	Xenopus_tropicalis
FBgn0038704	CG5316	87	44.262	ENSXCOG00000005020	aptx	56	40.341	Xiphophorus_couchianus
FBgn0038704	CG5316	87	44.262	ENSXMAG00000022086	aptx	51	40.341	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000012	single strand break repair	21873635.	IBA	Process
GO:0000012	single strand break repair	-	ISS	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0003684	damaged DNA binding	-	ISS	Function
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003725	double-stranded RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006302	double-strand break repair	21873635.	IBA	Process
GO:0030983	mismatched DNA binding	21873635.	IBA	Function
GO:0033699	DNA 5'-adenosine monophosphate hydrolase activity	21873635.	IBA	Function
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:1990165	single-strand break-containing DNA binding	21873635.	IBA	Function