EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0038826 (Gene tree)
Gene ID: 42460
Gene Symbol: Syp
Alias: -
Full Name: Syncrip
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 53998 bases
Position: chr3R:20756729-20810726
Accession: FBgn0038826
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0083367	RRM_5	PF13893.6	1e-07	1	1
FBpp0306767	RRM_5	PF13893.6	1.9e-07	1	1
FBpp0306764	RRM_5	PF13893.6	2.4e-07	1	1
FBpp0083368	RRM_5	PF13893.6	4.7e-07	1	1
FBpp0112168	RRM_5	PF13893.6	4.8e-07	1	1
FBpp0083365	RRM_5	PF13893.6	5.5e-07	1	1
FBpp0306772	RRM_5	PF13893.6	5.7e-07	1	1
FBpp0083370	RRM_5	PF13893.6	5.7e-07	1	1
FBpp0306763	RRM_5	PF13893.6	6.6e-07	1	1
FBpp0306769	RRM_5	PF13893.6	6.8e-07	1	1
FBpp0306768	RRM_5	PF13893.6	7.4e-07	1	1
FBpp0306770	RRM_5	PF13893.6	7.4e-07	1	1
FBpp0083369	RRM_5	PF13893.6	8.7e-07	1	1
FBpp0083366	RRM_5	PF13893.6	8.9e-07	1	1
FBpp0306766	RRM_5	PF13893.6	8.9e-07	1	1
FBpp0306765	RRM_5	PF13893.6	1e-06	1	1
FBpp0306771	RRM_5	PF13893.6	1.1e-06	1	1
FBpp0083367	RRM_1	PF00076.22	4.7e-46	1	3
FBpp0083367	RRM_1	PF00076.22	4.7e-46	2	3
FBpp0083367	RRM_1	PF00076.22	4.7e-46	3	3
FBpp0306767	RRM_1	PF00076.22	1.5e-45	1	3
FBpp0306767	RRM_1	PF00076.22	1.5e-45	2	3
FBpp0306767	RRM_1	PF00076.22	1.5e-45	3	3
FBpp0306764	RRM_1	PF00076.22	2.2e-45	1	3
FBpp0306764	RRM_1	PF00076.22	2.2e-45	2	3
FBpp0306764	RRM_1	PF00076.22	2.2e-45	3	3
FBpp0083368	RRM_1	PF00076.22	4e-45	1	3
FBpp0083368	RRM_1	PF00076.22	4e-45	2	3
FBpp0083368	RRM_1	PF00076.22	4e-45	3	3
FBpp0112168	RRM_1	PF00076.22	4.2e-45	1	3
FBpp0112168	RRM_1	PF00076.22	4.2e-45	2	3
FBpp0112168	RRM_1	PF00076.22	4.2e-45	3	3
FBpp0083365	RRM_1	PF00076.22	5.2e-45	1	3
FBpp0083365	RRM_1	PF00076.22	5.2e-45	2	3
FBpp0083365	RRM_1	PF00076.22	5.2e-45	3	3
FBpp0306772	RRM_1	PF00076.22	5.5e-45	1	3
FBpp0306772	RRM_1	PF00076.22	5.5e-45	2	3
FBpp0306772	RRM_1	PF00076.22	5.5e-45	3	3
FBpp0083370	RRM_1	PF00076.22	5.5e-45	1	3
FBpp0083370	RRM_1	PF00076.22	5.5e-45	2	3
FBpp0083370	RRM_1	PF00076.22	5.5e-45	3	3
FBpp0306763	RRM_1	PF00076.22	7e-45	1	3
FBpp0306763	RRM_1	PF00076.22	7e-45	2	3
FBpp0306763	RRM_1	PF00076.22	7e-45	3	3
FBpp0306769	RRM_1	PF00076.22	7.4e-45	1	3
FBpp0306769	RRM_1	PF00076.22	7.4e-45	2	3
FBpp0306769	RRM_1	PF00076.22	7.4e-45	3	3
FBpp0306768	RRM_1	PF00076.22	1e-44	1	3
FBpp0306768	RRM_1	PF00076.22	1e-44	2	3
FBpp0306768	RRM_1	PF00076.22	1e-44	3	3
FBpp0306770	RRM_1	PF00076.22	1e-44	1	3
FBpp0306770	RRM_1	PF00076.22	1e-44	2	3
FBpp0306770	RRM_1	PF00076.22	1e-44	3	3
FBpp0083369	RRM_1	PF00076.22	1.3e-44	1	3
FBpp0083369	RRM_1	PF00076.22	1.3e-44	2	3
FBpp0083369	RRM_1	PF00076.22	1.3e-44	3	3
FBpp0083366	RRM_1	PF00076.22	1.4e-44	1	3
FBpp0083366	RRM_1	PF00076.22	1.4e-44	2	3
FBpp0083366	RRM_1	PF00076.22	1.4e-44	3	3
FBpp0306766	RRM_1	PF00076.22	1.4e-44	1	3
FBpp0306766	RRM_1	PF00076.22	1.4e-44	2	3
FBpp0306766	RRM_1	PF00076.22	1.4e-44	3	3
FBpp0306765	RRM_1	PF00076.22	1.8e-44	1	3
FBpp0306765	RRM_1	PF00076.22	1.8e-44	2	3
FBpp0306765	RRM_1	PF00076.22	1.8e-44	3	3
FBpp0306771	RRM_1	PF00076.22	1.8e-44	1	3
FBpp0306771	RRM_1	PF00076.22	1.8e-44	2	3
FBpp0306771	RRM_1	PF00076.22	1.8e-44	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0083963	-	6543	-	FBpp0083370	571 (aa)	-	A4V364
FBtr0083961	-	6794	-	FBpp0083368	529 (aa)	-	A4V364
FBtr0334720	-	4448	-	FBpp0306772	569 (aa)	-	A0A0B4KGK8
FBtr0083960	-	2740	-	FBpp0083367	529 (aa)	-	Q95TW4
FBtr0334717	-	2862	-	FBpp0306769	611 (aa)	-	A0A0B4KGK8
FBtr0334716	-	4732	-	FBpp0306768	665 (aa)	-	A0A0B4KGF9
FBtr0334715	-	3407	-	FBpp0306767	699 (aa)	-	A0A0B4KGK5
FBtr0334714	-	2837	-	FBpp0306766	711 (aa)	-	Q7KSA0
FBtr0334713	-	7374	-	FBpp0306765	753 (aa)	-	A0A0B4KHH8
FBtr0334712	-	2610	-	FBpp0306764	761 (aa)	-	A0A0B4KHT5
FBtr0334711	-	3123	-	FBpp0306763	603 (aa)	-	A0A0B4KH21
FBtr0334718	-	3397	-	FBpp0306770	665 (aa)	-	A0A0B4KGF9
FBtr0083958	-	2301	-	FBpp0083365	563 (aa)	-	Q8IN47
FBtr0083959	-	8675	-	FBpp0083366	711 (aa)	-	Q7KSA0
FBtr0334719	-	2610	-	FBpp0306771	761 (aa)	-	A0A0B4KHI4
FBtr0113256	-	2214	-	FBpp0112168	534 (aa)	-	A8JR54
FBtr0083962	-	3146	-	FBpp0083369	707 (aa)	-	A0A0B4KGF9

Gene Model

Click here to download FBgn0038826's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0038826's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0038826	Syp	53	56.184	ENSCHIG00000025862	-	91	40.684	Capra_hircus
FBgn0038826	Syp	76	61.634	ENSGMOG00000002822	-	64	61.634	Gadus_morhua
FBgn0038826	Syp	62	42.296	ENSGGOG00000036671	-	61	42.296	Gorilla_gorilla
FBgn0038826	Syp	75	60.349	ENSMAMG00000004406	-	77	54.149	Mastacembelus_armatus
FBgn0038826	Syp	70	57.373	ENSODEG00000004900	-	63	57.373	Octodon_degus
FBgn0038826	Syp	58	45.806	ENSODEG00000005445	-	88	37.826	Octodon_degus
FBgn0038826	Syp	62	36.391	ENSPTRG00000043439	-	60	36.391	Pan_troglodytes
FBgn0038826	Syp	60	55.696	ENSPCOG00000014665	-	68	44.057	Propithecus_coquereli
FBgn0038826	Syp	76	55.528	ENSTBEG00000002251	-	72	50.101	Tupaia_belangeri
FBgn0038826	Syp	59	60.000	ENSTTRG00000004471	-	81	60.000	Tursiops_truncatus
FBgn0038826	Syp	69	56.369	ENSTTRG00000007752	-	58	56.369	Tursiops_truncatus
FBgn0038826	Syp	77	51.691	ENSVPAG00000006411	-	64	52.334	Vicugna_pacos

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0003723	RNA binding	29580384.	IDA	Function
GO:0003729	mRNA binding	23213441.	IDA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	25171822.25171887.	IDA	Component
GO:0005829	cytosol	29580384.	IDA	Component
GO:0007310	oocyte dorsal/ventral axis specification	23213441.	IMP	Process
GO:0035770	ribonucleoprotein granule	23213441.	IDA	Component
GO:0045180	basal cortex	29580384.	IDA	Component
GO:0045886	negative regulation of synaptic growth at neuromuscular junction	25171822.	IMP	Process
GO:0046011	regulation of oskar mRNA translation	23213441.	IMP	Process
GO:0046843	dorsal appendage formation	23213441.	IMP	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0098975	postsynapse of neuromuscular junction	25171822.25171887.	IDA	Component
GO:1900073	regulation of neuromuscular synaptic transmission	25171887.	IMP	Process