EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0038964 (Gene tree)
Gene ID: 42633
Gene Symbol: Nop56
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 1974 bases
Position: chr3R:22419095-22421068
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0083625	Nop	PF01798.18	1.1e-87	1	1
FBpp0083625	NOP5NT	PF08156.13	8.1e-19	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0084230	-	1746	-	FBpp0083625	496 (aa)	-	Q8IGT5

Gene Model

Click here to download FBgn0038964's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0038964's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0038964	Nop56	83	42.482	FBgn0026196	nop5	95	39.200

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0038964	Nop56	88	69.425	ENSLOCG00000004860	-	87	64.139	Lepisosteus_oculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0030515	snoRNA binding	21873635.	IBA	Function
GO:0031428	box C/D snoRNP complex	21873635.	IBA	Component
GO:0032040	small-subunit processome	21873635.	IBA	Component