EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0039117 (Gene tree)
Gene ID: 42813
Gene Symbol: tst
Alias: -
Full Name: twister
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 4461 bases
Position: chr3R:23768399-23772859
Accession: FBgn0039117
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0083853	ResIII	PF04851.15	2.7e-05	1	1
FBpp0306916	ResIII	PF04851.15	2.7e-05	1	1
FBpp0083853	rRNA_proc-arch	PF13234.6	4.5e-19	1	1
FBpp0306916	rRNA_proc-arch	PF13234.6	4.5e-19	1	1
FBpp0083853	DEAD	PF00270.29	1.8e-16	1	1
FBpp0306916	DEAD	PF00270.29	1.8e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0084462	-	4332	-	FBpp0083853	1197 (aa)	-	Q9VCH8
FBtr0334895	-	3821	-	FBpp0306916	1197 (aa)	-	Q9BI21

Gene Model

Click here to download FBgn0039117's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0039117's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0039117	tst	79	35.036	FBgn0001986	Mtr4	86	34.833

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0039117	tst	97	43.923	ENSG00000204351	SKIV2L	93	43.839	Homo_sapiens
FBgn0039117	tst	97	45.072	ENSAPOG00000008257	skiv2l	93	45.202	Acanthochromis_polyacanthus
FBgn0039117	tst	97	43.708	ENSAMEG00000002078	SKIV2L	93	43.697	Ailuropoda_melanoleuca
FBgn0039117	tst	97	45.178	ENSACIG00000016719	skiv2l	94	45.047	Amphilophus_citrinellus
FBgn0039117	tst	97	44.593	ENSAOCG00000017352	skiv2l	93	44.649	Amphiprion_ocellaris
FBgn0039117	tst	97	44.510	ENSAPEG00000001055	skiv2l	93	44.510	Amphiprion_percula
FBgn0039117	tst	95	45.918	ENSATEG00000007601	skiv2l	91	46.043	Anabas_testudineus
FBgn0039117	tst	97	45.500	ENSACAG00000011746	SKIV2L	93	46.192	Anolis_carolinensis
FBgn0039117	tst	97	44.351	ENSANAG00000037992	SKIV2L	94	44.211	Aotus_nancymaae
FBgn0039117	tst	97	46.050	ENSACLG00000006886	skiv2l	94	46.010	Astatotilapia_calliptera
FBgn0039117	tst	95	46.285	ENSAMXG00000011517	skiv2l	92	46.167	Astyanax_mexicanus
FBgn0039117	tst	97	44.091	ENSBTAG00000005587	SKIV2L	93	43.839	Bos_taurus
FBgn0039117	tst	95	38.430	WBGene00008502	skih-2	95	38.689	Caenorhabditis_elegans
FBgn0039117	tst	97	44.268	ENSCJAG00000002263	SKIV2L	93	44.184	Callithrix_jacchus
FBgn0039117	tst	97	43.849	ENSCAFG00000000679	SKIV2L	93	43.839	Canis_familiaris
FBgn0039117	tst	97	43.849	ENSCAFG00020000948	SKIV2L	93	43.839	Canis_lupus_dingo
FBgn0039117	tst	97	43.923	ENSCHIG00000012897	SKIV2L	93	43.913	Capra_hircus
FBgn0039117	tst	97	43.829	ENSTSYG00000012133	SKIV2L	93	44.081	Carlito_syrichta
FBgn0039117	tst	97	44.239	ENSCPOG00000001307	SKIV2L	93	44.155	Cavia_porcellus
FBgn0039117	tst	97	44.174	ENSCCAG00000026206	SKIV2L	93	45.197	Cebus_capucinus
FBgn0039117	tst	97	44.091	ENSCATG00000036901	SKIV2L	93	43.839	Cercocebus_atys
FBgn0039117	tst	97	44.398	ENSCLAG00000007678	SKIV2L	93	44.313	Chinchilla_lanigera
FBgn0039117	tst	97	44.342	ENSCSAG00000008988	SKIV2L	93	44.258	Chlorocebus_sabaeus
FBgn0039117	tst	83	52.047	ENSCPBG00000000343	SKIV2L	90	52.047	Chrysemys_picta_bellii
FBgn0039117	tst	97	43.562	ENSCING00000005576	-	100	43.562	Ciona_intestinalis
FBgn0039117	tst	97	44.007	ENSCANG00000039709	SKIV2L	93	44.840	Colobus_angolensis_palliatus
FBgn0039117	tst	97	43.950	ENSCGRG00001008385	Skiv2l	93	43.866	Cricetulus_griseus_chok1gshd
FBgn0039117	tst	97	44.962	ENSCSEG00000011326	skiv2l	92	45.068	Cynoglossus_semilaevis
FBgn0039117	tst	97	44.785	ENSCVAG00000003072	skiv2l	94	44.702	Cyprinodon_variegatus
FBgn0039117	tst	96	44.612	ENSDARG00000062206	skiv2l	92	44.528	Danio_rerio
FBgn0039117	tst	86	52.211	ENSDNOG00000037590	SKIV2L	83	52.057	Dasypus_novemcinctus
FBgn0039117	tst	70	62.319	ENSETEG00000009522	SKIV2L	68	62.319	Echinops_telfairi
FBgn0039117	tst	89	44.758	ENSEBUG00000013680	-	93	44.155	Eptatretus_burgeri
FBgn0039117	tst	97	43.745	ENSEASG00005015534	SKIV2L	100	43.987	Equus_asinus_asinus
FBgn0039117	tst	92	43.517	ENSECAG00000021823	SKIV2L	89	43.772	Equus_caballus
FBgn0039117	tst	53	55.731	ENSEEUG00000005049	SKIV2L	56	55.336	Erinaceus_europaeus
FBgn0039117	tst	98	44.796	ENSELUG00000000181	skiv2l	94	44.796	Esox_lucius
FBgn0039117	tst	97	43.682	ENSFCAG00000004519	SKIV2L	93	43.671	Felis_catus
FBgn0039117	tst	97	43.013	ENSFDAG00000009438	SKIV2L	93	43.347	Fukomys_damarensis
FBgn0039117	tst	97	44.822	ENSFHEG00000008853	skiv2l	93	44.737	Fundulus_heteroclitus
FBgn0039117	tst	96	45.766	ENSGMOG00000005926	skiv2l	92	45.680	Gadus_morhua
FBgn0039117	tst	80	44.923	ENSGALG00000035499	SKIV2L	99	45.096	Gallus_gallus
FBgn0039117	tst	97	45.636	ENSGAFG00000002382	skiv2l	93	45.553	Gambusia_affinis
FBgn0039117	tst	95	46.247	ENSGACG00000002927	skiv2l	91	46.200	Gasterosteus_aculeatus
FBgn0039117	tst	97	44.295	ENSGGOG00000002270	SKIV2L	93	45.155	Gorilla_gorilla
FBgn0039117	tst	97	45.837	ENSHBUG00000000726	skiv2l	94	45.493	Haplochromis_burtoni
FBgn0039117	tst	97	43.577	ENSHGLG00000016596	SKIV2L	93	43.755	Heterocephalus_glaber_female
FBgn0039117	tst	97	43.134	ENSHGLG00100014161	SKIV2L	93	43.314	Heterocephalus_glaber_male
FBgn0039117	tst	97	45.208	ENSHCOG00000007191	skiv2l	95	45.123	Hippocampus_comes
FBgn0039117	tst	97	44.966	ENSIPUG00000016263	skiv2l	94	45.547	Ictalurus_punctatus
FBgn0039117	tst	97	44.165	ENSSTOG00000014596	SKIV2L	93	44.081	Ictidomys_tridecemlineatus
FBgn0039117	tst	52	45.401	ENSLACG00000002986	-	53	45.322	Latimeria_chalumnae
FBgn0039117	tst	97	44.332	ENSLAFG00000014231	SKIV2L	93	44.416	Loxodonta_africana
FBgn0039117	tst	97	44.174	ENSMFAG00000034235	SKIV2L	93	44.840	Macaca_fascicularis
FBgn0039117	tst	97	44.174	ENSMMUG00000000736	SKIV2L	93	44.840	Macaca_mulatta
FBgn0039117	tst	97	44.091	ENSMNEG00000044474	SKIV2L	93	44.749	Macaca_nemestrina
FBgn0039117	tst	97	44.091	ENSMLEG00000030512	SKIV2L	93	43.839	Mandrillus_leucophaeus
FBgn0039117	tst	97	45.661	ENSMAMG00000002927	skiv2l	93	45.700	Mastacembelus_armatus
FBgn0039117	tst	97	45.830	ENSMZEG00005026415	skiv2l	94	46.010	Maylandia_zebra
FBgn0039117	tst	53	66.087	ENSMGAG00000001320	SKIV2L	70	66.814	Meleagris_gallopavo
FBgn0039117	tst	97	44.013	ENSMAUG00000018613	Skiv2l	93	43.939	Mesocricetus_auratus
FBgn0039117	tst	97	44.249	ENSMICG00000046331	SKIV2L	93	44.165	Microcebus_murinus
FBgn0039117	tst	97	42.821	ENSMOCG00000014240	Skiv2l	93	42.689	Microtus_ochrogaster
FBgn0039117	tst	97	44.180	ENSMMOG00000014547	skiv2l	93	44.218	Mola_mola
FBgn0039117	tst	97	43.755	ENSMODG00000015052	SKIV2L	93	44.054	Monodelphis_domestica
FBgn0039117	tst	95	45.043	ENSMALG00000010535	skiv2l	92	44.957	Monopterus_albus
FBgn0039117	tst	97	44.595	MGP_CAROLIEiJ_G0021477	Skiv2l	93	44.360	Mus_caroli
FBgn0039117	tst	97	44.688	ENSMUSG00000040356	Skiv2l	93	44.454	Mus_musculus
FBgn0039117	tst	97	44.857	MGP_PahariEiJ_G0020472	Skiv2l	93	44.772	Mus_pahari
FBgn0039117	tst	97	44.604	MGP_SPRETEiJ_G0022382	Skiv2l	93	44.370	Mus_spretus
FBgn0039117	tst	97	43.682	ENSMPUG00000010567	SKIV2L	93	43.886	Mustela_putorius_furo
FBgn0039117	tst	97	44.529	ENSMLUG00000000628	SKIV2L	93	44.444	Myotis_lucifugus
FBgn0039117	tst	97	45.647	ENSNBRG00000018650	skiv2l	93	45.601	Neolamprologus_brichardi
FBgn0039117	tst	97	44.061	ENSNLEG00000006451	SKIV2L	93	44.995	Nomascus_leucogenys
FBgn0039117	tst	72	52.747	ENSMEUG00000006072	SKIV2L	70	52.747	Notamacropus_eugenii
FBgn0039117	tst	97	44.165	ENSOPRG00000003972	SKIV2L	93	44.081	Ochotona_princeps
FBgn0039117	tst	97	44.670	ENSODEG00000017516	SKIV2L	93	44.585	Octodon_degus
FBgn0039117	tst	97	45.907	ENSONIG00000013500	skiv2l	93	46.037	Oreochromis_niloticus
FBgn0039117	tst	97	44.332	ENSOCUG00000007019	SKIV2L	93	44.249	Oryctolagus_cuniculus
FBgn0039117	tst	97	45.805	ENSORLG00000002021	skiv2l	93	46.057	Oryzias_latipes
FBgn0039117	tst	97	45.910	ENSORLG00020009462	skiv2l	91	48.525	Oryzias_latipes_hni
FBgn0039117	tst	97	45.659	ENSORLG00015016750	skiv2l	93	45.993	Oryzias_latipes_hsok
FBgn0039117	tst	98	45.232	ENSOMEG00000008531	skiv2l	94	45.729	Oryzias_melastigma
FBgn0039117	tst	97	44.323	ENSOGAG00000009578	SKIV2L	93	44.276	Otolemur_garnettii
FBgn0039117	tst	97	43.023	ENSOARG00000002411	-	92	43.012	Ovis_aries
FBgn0039117	tst	97	43.833	ENSPPAG00000040211	SKIV2L	93	44.828	Pan_paniscus
FBgn0039117	tst	97	43.745	ENSPPRG00000005017	SKIV2L	93	43.682	Panthera_pardus
FBgn0039117	tst	97	43.515	ENSPTIG00000021656	SKIV2L	93	43.504	Panthera_tigris_altaica
FBgn0039117	tst	97	44.091	ENSPTRG00000017997	SKIV2L	93	44.932	Pan_troglodytes
FBgn0039117	tst	97	43.372	ENSPANG00000011501	SKIV2L	94	43.121	Papio_anubis
FBgn0039117	tst	96	46.387	ENSPKIG00000011876	skiv2l	92	49.645	Paramormyrops_kingsleyae
FBgn0039117	tst	97	44.605	ENSPMGG00000019707	skiv2l	92	44.728	Periophthalmus_magnuspinnatus
FBgn0039117	tst	97	43.519	ENSPEMG00000019001	Skiv2l	93	43.508	Peromyscus_maniculatus_bairdii
FBgn0039117	tst	97	44.061	ENSPCIG00000018792	SKIV2L	93	44.482	Phascolarctos_cinereus
FBgn0039117	tst	97	45.516	ENSPFOG00000002424	skiv2l	93	45.432	Poecilia_formosa
FBgn0039117	tst	97	45.599	ENSPLAG00000018304	skiv2l	93	45.546	Poecilia_latipinna
FBgn0039117	tst	97	45.409	ENSPMEG00000006997	skiv2l	93	45.326	Poecilia_mexicana
FBgn0039117	tst	97	45.047	ENSPREG00000002277	skiv2l	93	45.047	Poecilia_reticulata
FBgn0039117	tst	97	43.923	ENSPPYG00000016472	SKIV2L	93	43.923	Pongo_abelii
FBgn0039117	tst	73	50.000	ENSPCAG00000004178	SKIV2L	69	60.526	Procavia_capensis
FBgn0039117	tst	97	44.165	ENSPCOG00000010308	SKIV2L	93	44.081	Propithecus_coquereli
FBgn0039117	tst	97	44.351	ENSPVAG00000005136	SKIV2L	93	44.286	Pteropus_vampyrus
FBgn0039117	tst	90	48.522	ENSPNYG00000017853	skiv2l	91	48.420	Pundamilia_nyererei
FBgn0039117	tst	96	46.024	ENSPNAG00000011823	skiv2l	92	46.108	Pygocentrus_nattereri
FBgn0039117	tst	97	44.529	ENSRNOG00000000421	Skiv2l	93	44.444	Rattus_norvegicus
FBgn0039117	tst	97	43.620	ENSRBIG00000035485	SKIV2L	93	44.667	Rhinopithecus_bieti
FBgn0039117	tst	97	44.091	ENSRROG00000036429	SKIV2L	93	44.758	Rhinopithecus_roxellana
FBgn0039117	tst	98	35.350	YLR398C	-	94	35.247	Saccharomyces_cerevisiae
FBgn0039117	tst	97	44.258	ENSSBOG00000027920	SKIV2L	93	44.249	Saimiri_boliviensis_boliviensis
FBgn0039117	tst	97	44.210	ENSSHAG00000008963	SKIV2L	93	43.834	Sarcophilus_harrisii
FBgn0039117	tst	97	45.401	ENSSFOG00015016930	skiv2l	95	44.735	Scleropages_formosus
FBgn0039117	tst	97	44.737	ENSSMAG00000020185	skiv2l	94	44.833	Scophthalmus_maximus
FBgn0039117	tst	97	45.196	ENSSDUG00000019977	skiv2l	93	45.151	Seriola_dumerili
FBgn0039117	tst	97	44.919	ENSSLDG00000024382	skiv2l	92	44.663	Seriola_lalandi_dorsalis
FBgn0039117	tst	97	43.967	ENSSPUG00000012945	SKIV2L	93	44.215	Sphenodon_punctatus
FBgn0039117	tst	91	44.215	ENSSPAG00000012904	skiv2l	91	44.554	Stegastes_partitus
FBgn0039117	tst	97	44.054	ENSSSCG00000001424	SKIV2L	100	42.600	Sus_scrofa
FBgn0039117	tst	72	50.000	ENSTRUG00000000966	skiv2l	75	55.000	Takifugu_rubripes
FBgn0039117	tst	97	44.708	ENSTNIG00000004382	skiv2l	92	45.017	Tetraodon_nigroviridis
FBgn0039117	tst	91	41.796	ENSTBEG00000003462	SKIV2L	88	41.677	Tupaia_belangeri
FBgn0039117	tst	97	41.176	ENSTTRG00000005931	SKIV2L	93	41.162	Tursiops_truncatus
FBgn0039117	tst	97	43.960	ENSUAMG00000024336	SKIV2L	93	43.950	Ursus_americanus
FBgn0039117	tst	97	43.782	ENSUMAG00000012666	SKIV2L	100	43.697	Ursus_maritimus
FBgn0039117	tst	97	43.849	ENSVVUG00000022807	SKIV2L	93	44.444	Vulpes_vulpes
FBgn0039117	tst	99	43.525	ENSXETG00000010932	skiv2l	95	43.596	Xenopus_tropicalis
FBgn0039117	tst	97	45.172	ENSXCOG00000019517	skiv2l	91	45.172	Xiphophorus_couchianus
FBgn0039117	tst	97	45.341	ENSXMAG00000014079	skiv2l	93	45.341	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	21873635.	IBA	Function
GO:0004386	helicase activity	10908586.	ISS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	15492211.	IC	Component
GO:0006401	RNA catabolic process	21873635.	IBA	Process
GO:0055087	Ski complex	21873635.	IBA	Component
GO:0070478	nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	21873635.	IBA	Process