EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0039182 (Gene tree)
Gene ID: 42899
Gene Symbol: CG5728
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 4862 bases
Position: chr3R:24328455-24333316
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0084016	Suf	PF05843.14	8.2e-06	1	1
FBpp0084016	S1	PF00575.23	6.4e-10	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0084632	-	4622	-	FBpp0084016	1430 (aa)	-	Q9VC94

Gene Model

Click here to download FBgn0039182's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0039182's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0039182	CG5728	79	36.705	ENSG00000148843	PDCD11	60	38.978	Homo_sapiens
FBgn0039182	CG5728	73	33.531	ENSAPOG00000015629	pdcd11	60	32.773	Acanthochromis_polyacanthus
FBgn0039182	CG5728	62	37.261	ENSAMEG00000017935	PDCD11	59	37.261	Ailuropoda_melanoleuca
FBgn0039182	CG5728	86	38.768	ENSAPLG00000010301	PDCD11	67	34.615	Anas_platyrhynchos
FBgn0039182	CG5728	86	37.943	ENSACAG00000004796	PDCD11	69	37.609	Anolis_carolinensis
FBgn0039182	CG5728	71	39.936	ENSANAG00000034576	PDCD11	60	39.241	Aotus_nancymaae
FBgn0039182	CG5728	64	33.829	ENSACLG00000018236	pdcd11	60	31.117	Astatotilapia_calliptera
FBgn0039182	CG5728	68	34.688	ENSAMXG00000005458	pdcd11	64	34.568	Astyanax_mexicanus
FBgn0039182	CG5728	67	38.658	ENSBTAG00000009715	PDCD11	60	38.658	Bos_taurus
FBgn0039182	CG5728	74	37.572	ENSCJAG00000018257	PDCD11	60	39.172	Callithrix_jacchus
FBgn0039182	CG5728	62	37.898	ENSCAFG00000010411	PDCD11	60	37.898	Canis_familiaris
FBgn0039182	CG5728	70	33.028	ENSCAFG00020010369	PDCD11	61	37.898	Canis_lupus_dingo
FBgn0039182	CG5728	63	37.267	ENSCHIG00000025218	PDCD11	60	37.267	Capra_hircus
FBgn0039182	CG5728	75	36.190	ENSTSYG00000033423	PDCD11	51	36.190	Carlito_syrichta
FBgn0039182	CG5728	72	36.190	ENSCPOG00000010957	PDCD11	65	36.190	Cavia_porcellus
FBgn0039182	CG5728	62	39.172	ENSCCAG00000018950	PDCD11	60	39.172	Cebus_capucinus
FBgn0039182	CG5728	72	38.217	ENSCATG00000044331	PDCD11	60	38.217	Cercocebus_atys
FBgn0039182	CG5728	72	37.580	ENSCLAG00000001029	PDCD11	56	37.580	Chinchilla_lanigera
FBgn0039182	CG5728	72	38.535	ENSCSAG00000005346	PDCD11	60	38.535	Chlorocebus_sabaeus
FBgn0039182	CG5728	63	38.929	ENSCPBG00000024487	PDCD11	57	35.567	Chrysemys_picta_bellii
FBgn0039182	CG5728	72	37.898	ENSCANG00000043300	PDCD11	60	37.898	Colobus_angolensis_palliatus
FBgn0039182	CG5728	74	40.283	ENSCGRG00001006458	Pdcd11	60	39.241	Cricetulus_griseus_chok1gshd
FBgn0039182	CG5728	74	39.929	ENSCGRG00000003583	Pdcd11	60	38.924	Cricetulus_griseus_crigri
FBgn0039182	CG5728	89	33.225	ENSCSEG00000010739	pdcd11	74	33.225	Cynoglossus_semilaevis
FBgn0039182	CG5728	89	34.524	ENSDARG00000052480	pdcd11	70	34.524	Danio_rerio
FBgn0039182	CG5728	62	39.297	ENSDNOG00000013838	PDCD11	60	39.297	Dasypus_novemcinctus
FBgn0039182	CG5728	75	38.127	ENSDORG00000010420	Pdcd11	62	37.539	Dipodomys_ordii
FBgn0039182	CG5728	57	36.789	ENSEBUG00000002358	-	64	37.415	Eptatretus_burgeri
FBgn0039182	CG5728	66	33.636	ENSEASG00005015159	PDCD11	58	38.217	Equus_asinus_asinus
FBgn0039182	CG5728	71	33.705	ENSECAG00000020507	PDCD11	60	38.291	Equus_caballus
FBgn0039182	CG5728	81	34.069	ENSELUG00000004211	pdcd11	64	34.069	Esox_lucius
FBgn0039182	CG5728	62	37.778	ENSFCAG00000002384	PDCD11	60	37.778	Felis_catus
FBgn0039182	CG5728	72	39.051	ENSFALG00000008775	PDCD11	60	37.237	Ficedula_albicollis
FBgn0039182	CG5728	70	40.067	ENSFDAG00000009532	PDCD11	56	40.575	Fukomys_damarensis
FBgn0039182	CG5728	59	33.807	ENSFHEG00000022997	pdcd11	50	35.254	Fundulus_heteroclitus
FBgn0039182	CG5728	64	30.205	ENSGMOG00000004186	pdcd11	52	30.792	Gadus_morhua
FBgn0039182	CG5728	65	33.531	ENSGAFG00000012806	pdcd11	55	31.989	Gambusia_affinis
FBgn0039182	CG5728	86	33.613	ENSGACG00000018233	pdcd11	90	33.613	Gasterosteus_aculeatus
FBgn0039182	CG5728	57	37.500	ENSGAGG00000024314	PDCD11	56	34.112	Gopherus_agassizii
FBgn0039182	CG5728	77	38.217	ENSGGOG00000011621	PDCD11	60	38.217	Gorilla_gorilla
FBgn0039182	CG5728	74	32.295	ENSHBUG00000020226	pdcd11	54	31.476	Haplochromis_burtoni
FBgn0039182	CG5728	83	38.608	ENSHGLG00000001462	PDCD11	65	38.608	Heterocephalus_glaber_female
FBgn0039182	CG5728	83	37.261	ENSHGLG00100018779	PDCD11	64	37.261	Heterocephalus_glaber_male
FBgn0039182	CG5728	74	38.768	ENSJJAG00000015523	Pdcd11	66	38.608	Jaculus_jaculus
FBgn0039182	CG5728	60	40.316	ENSLOCG00000011818	pdcd11	61	40.316	Lepisosteus_oculatus
FBgn0039182	CG5728	74	39.493	ENSLAFG00000008398	PDCD11	59	39.493	Loxodonta_africana
FBgn0039182	CG5728	72	38.217	ENSMFAG00000044058	PDCD11	60	38.217	Macaca_fascicularis
FBgn0039182	CG5728	72	38.217	ENSMMUG00000007058	PDCD11	60	38.217	Macaca_mulatta
FBgn0039182	CG5728	72	38.217	ENSMNEG00000040726	PDCD11	60	38.217	Macaca_nemestrina
FBgn0039182	CG5728	75	35.753	ENSMLEG00000040978	PDCD11	61	38.217	Mandrillus_leucophaeus
FBgn0039182	CG5728	73	32.295	ENSMZEG00005008949	pdcd11	54	31.476	Maylandia_zebra
FBgn0039182	CG5728	74	40.075	ENSMGAG00000010482	PDCD11	58	38.012	Meleagris_gallopavo
FBgn0039182	CG5728	80	38.790	ENSMAUG00000014924	Pdcd11	70	37.898	Mesocricetus_auratus
FBgn0039182	CG5728	62	38.217	ENSMICG00000012421	PDCD11	60	38.217	Microcebus_murinus
FBgn0039182	CG5728	74	39.146	ENSMOCG00000021792	Pdcd11	60	38.217	Microtus_ochrogaster
FBgn0039182	CG5728	88	39.799	ENSMODG00000011077	PDCD11	50	38.801	Monodelphis_domestica
FBgn0039182	CG5728	74	40.636	MGP_CAROLIEiJ_G0023050	Pdcd11	60	40.125	Mus_caroli
FBgn0039182	CG5728	74	40.636	ENSMUSG00000025047	Pdcd11	60	39.812	Mus_musculus
FBgn0039182	CG5728	74	40.636	MGP_PahariEiJ_G0014540	Pdcd11	60	39.812	Mus_pahari
FBgn0039182	CG5728	74	40.636	MGP_SPRETEiJ_G0023971	Pdcd11	60	39.812	Mus_spretus
FBgn0039182	CG5728	75	39.073	ENSMPUG00000016829	PDCD11	60	37.898	Mustela_putorius_furo
FBgn0039182	CG5728	71	38.217	ENSMLUG00000004997	PDCD11	59	38.217	Myotis_lucifugus
FBgn0039182	CG5728	72	40.190	ENSNGAG00000018143	Pdcd11	60	40.190	Nannospalax_galili
FBgn0039182	CG5728	80	33.120	ENSOPRG00000010593	PDCD11	61	34.129	Ochotona_princeps
FBgn0039182	CG5728	62	37.217	ENSODEG00000008079	PDCD11	69	37.695	Octodon_degus
FBgn0039182	CG5728	85	32.258	ENSONIG00000018835	pdcd11	52	32.258	Oreochromis_niloticus
FBgn0039182	CG5728	70	37.847	ENSOANG00000001636	-	53	37.195	Ornithorhynchus_anatinus
FBgn0039182	CG5728	77	37.898	ENSOCUG00000006312	PDCD11	60	37.898	Oryctolagus_cuniculus
FBgn0039182	CG5728	65	35.260	ENSORLG00020003642	pdcd11	55	32.598	Oryzias_latipes_hni
FBgn0039182	CG5728	81	35.260	ENSORLG00015001618	pdcd11	69	32.587	Oryzias_latipes_hsok
FBgn0039182	CG5728	74	39.493	ENSOGAG00000008683	PDCD11	60	38.535	Otolemur_garnettii
FBgn0039182	CG5728	68	37.152	ENSOARG00000003719	PDCD11	60	37.152	Ovis_aries
FBgn0039182	CG5728	79	36.416	ENSPPAG00000024593	PDCD11	58	38.658	Pan_paniscus
FBgn0039182	CG5728	62	37.778	ENSPPRG00000015133	PDCD11	60	37.778	Panthera_pardus
FBgn0039182	CG5728	79	36.416	ENSPTRG00000002911	PDCD11	60	38.658	Pan_troglodytes
FBgn0039182	CG5728	72	38.217	ENSPANG00000020959	PDCD11	60	38.217	Papio_anubis
FBgn0039182	CG5728	68	37.500	ENSPKIG00000000973	pdcd11	56	35.734	Paramormyrops_kingsleyae
FBgn0039182	CG5728	59	34.967	ENSPMGG00000007289	pdcd11	68	34.641	Periophthalmus_magnuspinnatus
FBgn0039182	CG5728	74	39.929	ENSPEMG00000010315	Pdcd11	60	39.241	Peromyscus_maniculatus_bairdii
FBgn0039182	CG5728	71	34.615	ENSPMAG00000003098	pdcd11	52	35.215	Petromyzon_marinus
FBgn0039182	CG5728	63	39.785	ENSPCIG00000001118	PDCD11	59	34.328	Phascolarctos_cinereus
FBgn0039182	CG5728	93	33.702	ENSPFOG00000006012	pdcd11	75	33.702	Poecilia_formosa
FBgn0039182	CG5728	65	34.270	ENSPLAG00000014494	pdcd11	54	34.270	Poecilia_latipinna
FBgn0039182	CG5728	91	33.702	ENSPREG00000000475	pdcd11	76	31.742	Poecilia_reticulata
FBgn0039182	CG5728	62	38.095	ENSPCOG00000023327	PDCD11	62	38.095	Propithecus_coquereli
FBgn0039182	CG5728	62	39.172	ENSPVAG00000004176	PDCD11	60	39.172	Pteropus_vampyrus
FBgn0039182	CG5728	70	32.295	ENSPNYG00000003979	pdcd11	53	31.476	Pundamilia_nyererei
FBgn0039182	CG5728	67	35.030	ENSPNAG00000017225	pdcd11	61	32.857	Pygocentrus_nattereri
FBgn0039182	CG5728	74	40.989	ENSRNOG00000020304	Pdcd11	68	39.873	Rattus_norvegicus
FBgn0039182	CG5728	72	37.580	ENSRBIG00000011889	PDCD11	60	37.580	Rhinopithecus_bieti
FBgn0039182	CG5728	72	37.898	ENSRROG00000030483	PDCD11	60	37.898	Rhinopithecus_roxellana
FBgn0039182	CG5728	63	39.286	ENSSHAG00000018258	PDCD11	52	38.365	Sarcophilus_harrisii
FBgn0039182	CG5728	82	32.782	ENSSFOG00015003881	pdcd11	63	32.782	Scleropages_formosus
FBgn0039182	CG5728	91	34.302	ENSSMAG00000006612	pdcd11	69	33.894	Scophthalmus_maximus
FBgn0039182	CG5728	69	35.207	ENSSDUG00000021302	pdcd11	58	31.336	Seriola_dumerili
FBgn0039182	CG5728	91	32.945	ENSTNIG00000012085	pdcd11	68	32.682	Tetraodon_nigroviridis
FBgn0039182	CG5728	67	38.411	ENSTTRG00000003356	PDCD11	53	36.909	Tursiops_truncatus
FBgn0039182	CG5728	62	38.924	ENSUAMG00000018015	PDCD11	60	38.924	Ursus_americanus
FBgn0039182	CG5728	76	38.924	ENSUMAG00000023567	PDCD11	61	38.924	Ursus_maritimus
FBgn0039182	CG5728	62	37.898	ENSVVUG00000004457	PDCD11	61	37.898	Vulpes_vulpes
FBgn0039182	CG5728	86	37.329	ENSXETG00000009482	pdcd11	70	36.337	Xenopus_tropicalis
FBgn0039182	CG5728	68	32.955	ENSXMAG00000004638	pdcd11	56	30.695	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	15492211.	IC	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0032040	small-subunit processome	21873635.	IBA	Component