EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: FBgn0039229 (Gene tree)
Gene ID: 42958
Gene Symbol: Saf-B
Alias: -
Full Name: Scaffold attachment factor B
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 4887 bases
Position: chr3R:24817464-24822350
Accession: FBgn0039229
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0084078	RRM_1	PF00076.22	1.2e-13	1	1
FBpp0352253	SAP	PF02037.27	1.1e-08	1	1
FBpp0352254	SAP	PF02037.27	1.1e-08	1	1
FBpp0304085	SAP	PF02037.27	1.2e-08	1	1
FBpp0084078	SAP	PF02037.27	2.1e-08	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0084700	-	3124	-	FBpp0084078	928 (aa)	-	Q7K1P7
FBtr0331696	-	2085	-	FBpp0304085	279 (aa)	-	A0A0B4KGV9
FBtr0392911	-	4332	-	FBpp0352253	270 (aa)	-	A0A126GV03
FBtr0392912	-	4003	-	FBpp0352254	270 (aa)	-	A0A126GV03

Gene Model

Click here to download FBgn0039229's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0039229's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	15492211.	IC	Component
GO:0005654	nucleoplasm	20422039.	IDA	Component
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0016363	nuclear matrix	20422039.	IDA	Component
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0050684	regulation of mRNA processing	21873635.	IBA	Process