EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0039260 (Gene tree)
Gene ID: 42994
Gene Symbol: Smg6
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 4037 bases
Position: chr3R:25029429-25033465
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0084171	EST1_DNA_bind	PF10373.9	5.1e-83	1	1
FBpp0084171	PIN_4	PF13638.6	5.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0084796	-	3310	-	FBpp0084171	948 (aa)	-	Q86BS8

Gene Model

Click here to download FBgn0039260's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0039260's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0039260	Smg6	63	32.800	ENSCAPG00000016197	SMG6	50	32.800	Cavia_aperea
FBgn0039260	Smg6	70	32.990	ENSMLEG00000029353	SMG6	53	32.990	Mandrillus_leucophaeus
FBgn0039260	Smg6	55	31.214	ENSOPRG00000000579	SMG6	57	30.857	Ochotona_princeps

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	21873635.	IBA	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	20826458.	IDA	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	12881430.16177138.17053788.	IMP	Process
GO:0004521	endoribonuclease activity	21873635.	IBA	Function
GO:0004521	endoribonuclease activity	-	ISS	Function
GO:0004540	ribonuclease activity	17053788.	IDA	Function
GO:0005697	telomerase holoenzyme complex	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	-	ISS	Component
GO:0007004	telomere maintenance via telomerase	21873635.	IBA	Process
GO:0007274	neuromuscular synaptic transmission	20826458.	IDA	Process
GO:0016246	RNA interference	16177138.	IMP	Process
GO:0032210	regulation of telomere maintenance via telomerase	21873635.	IBA	Process
GO:0035195	gene silencing by miRNA	16177138.	IMP	Process
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0043021	ribonucleoprotein complex binding	21873635.	IBA	Function
GO:0043487	regulation of RNA stability	21873635.	IBA	Process
GO:0043487	regulation of RNA stability	22740637.	IMP	Process
GO:0050808	synapse organization	20826458.	IDA	Process
GO:0070034	telomerase RNA binding	21873635.	IBA	Function