EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0039300 (Gene tree)
Gene ID: 43039
Gene Symbol: RpS27
Alias: -
Full Name: Ribosomal protein S27
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 1560 bases
Position: chr3R:25245955-25247514
Accession: FBgn0039300
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0084242	Ribosomal_S27e	PF01667.17	5.6e-28	1	1
FBpp0293236	Ribosomal_S27e	PF01667.17	5.6e-28	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0304693	-	687	-	FBpp0293236	84 (aa)	-	Q9VBU9
FBtr0084868	-	729	-	FBpp0084242	84 (aa)	-	Q9VBU9

Gene Model

Click here to download FBgn0039300's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0039300's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0039300	RpS27	98	78.049	WBGene00004496	rps-27	99	78.049	Caenorhabditis_elegans
FBgn0039300	RpS27	90	69.737	ENSFHEG00000004295	-	55	69.737	Fundulus_heteroclitus
FBgn0039300	RpS27	98	68.293	ENSGAFG00000016054	-	59	68.293	Gambusia_affinis
FBgn0039300	RpS27	93	71.795	ENSGACG00000011286	-	92	71.795	Gasterosteus_aculeatus
FBgn0039300	RpS27	95	68.750	ENSMMOG00000020318	-	96	68.750	Mola_mola
FBgn0039300	RpS27	93	69.231	ENSPFOG00000004190	-	98	69.231	Poecilia_formosa
FBgn0039300	RpS27	98	69.512	ENSPLAG00000013332	-	98	69.512	Poecilia_latipinna
FBgn0039300	RpS27	98	69.512	ENSPLAG00000023590	-	98	69.512	Poecilia_latipinna
FBgn0039300	RpS27	98	68.675	ENSPMEG00000017808	-	90	68.675	Poecilia_mexicana
FBgn0039300	RpS27	98	70.732	YHR021C	RPS27B	100	70.732	Saccharomyces_cerevisiae
FBgn0039300	RpS27	98	71.951	YKL156W	RPS27A	100	71.951	Saccharomyces_cerevisiae
FBgn0039300	RpS27	94	74.684	ENSSLDG00000003982	-	90	74.684	Seriola_lalandi_dorsalis
FBgn0039300	RpS27	98	68.293	ENSXCOG00000010263	-	98	68.293	Xiphophorus_couchianus
FBgn0039300	RpS27	90	69.737	ENSXMAG00000003387	-	88	69.737	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000028	ribosomal small subunit assembly	21873635.	IBA	Process
GO:0002181	cytoplasmic translation	16889426.	IC	Process
GO:0002181	cytoplasmic translation	17927810.	TAS	Process
GO:0003735	structural constituent of ribosome	16889426.	HDA	Function
GO:0003735	structural constituent of ribosome	21873635.	IBA	Function
GO:0003735	structural constituent of ribosome	17927810.	TAS	Function
GO:0006412	translation	16889426.	IC	Process
GO:0006412	translation	-	IEA	Process
GO:0022626	cytosolic ribosome	16889426.	HDA	Component
GO:0022627	cytosolic small ribosomal subunit	21873635.	IBA	Component
GO:0022627	cytosolic small ribosomal subunit	17927810.	TAS	Component