EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0039339 (Gene tree)
Gene ID: 43081
Gene Symbol: CG5116
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 2758 bases
Position: chr3R:25483098-25485855
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0084251	MMR_HSR1	PF01926.23	2.2e-12	1	1
FBpp0309866	MMR_HSR1	PF01926.23	2.2e-12	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0084877	-	2380	-	FBpp0084251	526 (aa)	-	Q9VBQ7
FBtr0343172	-	2158	-	FBpp0309866	526 (aa)	-	Q8SYD1

Gene Model

Click here to download FBgn0039339's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0039339's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0039339	CG5116	82	39.817	ENSG00000178605	GTPBP6	92	37.854	Homo_sapiens
FBgn0039339	CG5116	81	39.140	ENSAPOG00000001396	gtpbp6	83	38.116	Acanthochromis_polyacanthus
FBgn0039339	CG5116	81	38.952	ENSAMEG00000001958	GTPBP6	89	38.952	Ailuropoda_melanoleuca
FBgn0039339	CG5116	78	38.695	ENSACIG00000001694	gtpbp6	79	37.528	Amphilophus_citrinellus
FBgn0039339	CG5116	81	38.914	ENSAOCG00000014817	gtpbp6	83	37.687	Amphiprion_ocellaris
FBgn0039339	CG5116	81	39.140	ENSAPEG00000017894	gtpbp6	83	37.901	Amphiprion_percula
FBgn0039339	CG5116	81	38.444	ENSATEG00000012768	gtpbp6	79	38.444	Anabas_testudineus
FBgn0039339	CG5116	77	39.709	ENSAPLG00000005592	GTPBP6	98	39.709	Anas_platyrhynchos
FBgn0039339	CG5116	81	40.503	ENSACAG00000011834	GTPBP6	87	38.589	Anolis_carolinensis
FBgn0039339	CG5116	86	37.872	ENSACLG00000002216	gtpbp6	83	37.447	Astatotilapia_calliptera
FBgn0039339	CG5116	98	33.458	ENSAMXG00000012493	gtpbp6	93	33.458	Astyanax_mexicanus
FBgn0039339	CG5116	82	40.682	ENSBTAG00000054315	GTPBP6	84	39.229	Bos_taurus
FBgn0039339	CG5116	67	40.443	ENSCJAG00000013056	GTPBP6	99	40.443	Callithrix_jacchus
FBgn0039339	CG5116	81	40.319	ENSCAFG00000010931	GTPBP6	80	40.319	Canis_familiaris
FBgn0039339	CG5116	81	40.319	ENSCAFG00020001279	-	80	40.319	Canis_lupus_dingo
FBgn0039339	CG5116	81	40.319	ENSCAFG00020010766	-	80	40.319	Canis_lupus_dingo
FBgn0039339	CG5116	82	40.909	ENSCHIG00000000121	GTPBP6	82	40.909	Capra_hircus
FBgn0039339	CG5116	82	39.863	ENSCCAG00000032874	GTPBP6	82	39.863	Cebus_capucinus
FBgn0039339	CG5116	82	40.503	ENSCATG00000024945	GTPBP6	82	40.503	Cercocebus_atys
FBgn0039339	CG5116	50	44.528	ENSCSAG00000018371	-	98	44.528	Chlorocebus_sabaeus
FBgn0039339	CG5116	81	40.278	ENSCPBG00000007520	GTPBP6	81	40.046	Chrysemys_picta_bellii
FBgn0039339	CG5116	99	32.532	ENSCING00000012867	-	99	32.532	Ciona_intestinalis
FBgn0039339	CG5116	69	34.550	ENSCSAVG00000009232	-	92	34.550	Ciona_savignyi
FBgn0039339	CG5116	81	40.639	ENSCGRG00001022411	Gtpbp6	83	41.324	Cricetulus_griseus_chok1gshd
FBgn0039339	CG5116	76	41.063	ENSCGRG00000007715	Gtpbp6	93	41.787	Cricetulus_griseus_crigri
FBgn0039339	CG5116	81	37.727	ENSCSEG00000007271	gtpbp6	82	37.727	Cynoglossus_semilaevis
FBgn0039339	CG5116	81	38.851	ENSCVAG00000015417	gtpbp6	82	38.851	Cyprinodon_variegatus
FBgn0039339	CG5116	81	38.375	ENSDARG00000061091	gtpbp6	77	39.041	Danio_rerio
FBgn0039339	CG5116	64	35.652	ENSDNOG00000039508	GTPBP6	76	35.072	Dasypus_novemcinctus
FBgn0039339	CG5116	96	35.317	ENSEBUG00000000404	gtpbp6	88	35.317	Eptatretus_burgeri
FBgn0039339	CG5116	76	43.243	ENSECAG00000032734	GTPBP6	78	42.965	Equus_caballus
FBgn0039339	CG5116	77	38.129	ENSELUG00000016376	gtpbp6	72	38.129	Esox_lucius
FBgn0039339	CG5116	67	40.449	ENSFCAG00000013263	-	69	40.449	Felis_catus
FBgn0039339	CG5116	81	37.194	ENSFCAG00000010310	-	89	44.017	Felis_catus
FBgn0039339	CG5116	81	37.757	ENSFALG00000004133	GTPBP6	89	37.529	Ficedula_albicollis
FBgn0039339	CG5116	85	38.428	ENSFHEG00000012018	gtpbp6	85	37.991	Fundulus_heteroclitus
FBgn0039339	CG5116	75	38.443	ENSGMOG00000004778	gtpbp6	97	38.443	Gadus_morhua
FBgn0039339	CG5116	76	38.725	ENSGALG00000016717	GTPBP6	98	38.725	Gallus_gallus
FBgn0039339	CG5116	81	39.318	ENSGAFG00000018158	gtpbp6	73	39.318	Gambusia_affinis
FBgn0039339	CG5116	76	39.518	ENSGACG00000013857	gtpbp6	99	39.518	Gasterosteus_aculeatus
FBgn0039339	CG5116	77	40.000	ENSGAGG00000021606	GTPBP6	77	40.000	Gopherus_agassizii
FBgn0039339	CG5116	52	44.280	ENSGGOG00000002792	-	92	44.280	Gorilla_gorilla
FBgn0039339	CG5116	86	37.447	ENSHBUG00000013113	gtpbp6	83	37.021	Haplochromis_burtoni
FBgn0039339	CG5116	82	40.227	ENSHGLG00000000207	GTPBP6	82	40.227	Heterocephalus_glaber_female
FBgn0039339	CG5116	69	42.432	ENSHGLG00100000320	GTPBP6	100	42.432	Heterocephalus_glaber_male
FBgn0039339	CG5116	51	43.233	ENSHCOG00000012544	gtpbp6	83	42.751	Hippocampus_comes
FBgn0039339	CG5116	81	38.095	ENSIPUG00000022531	gtpbp6	85	36.511	Ictalurus_punctatus
FBgn0039339	CG5116	82	37.358	ENSKMAG00000016464	gtpbp6	81	36.902	Kryptolebias_marmoratus
FBgn0039339	CG5116	81	39.229	ENSLBEG00000024203	gtpbp6	80	39.229	Labrus_bergylta
FBgn0039339	CG5116	81	38.497	ENSLACG00000012754	GTPBP6	89	35.867	Latimeria_chalumnae
FBgn0039339	CG5116	88	35.699	ENSLOCG00000008009	gtpbp6	96	35.699	Lepisosteus_oculatus
FBgn0039339	CG5116	82	40.275	ENSMFAG00000041568	GTPBP6	82	40.275	Macaca_fascicularis
FBgn0039339	CG5116	82	37.529	ENSMNEG00000039609	GTPBP6	81	37.529	Macaca_nemestrina
FBgn0039339	CG5116	81	37.955	ENSMAMG00000012631	gtpbp6	87	36.364	Mastacembelus_armatus
FBgn0039339	CG5116	86	37.872	ENSMZEG00005002869	gtpbp6	83	37.447	Maylandia_zebra
FBgn0039339	CG5116	71	40.209	ENSMGAG00000014752	GTPBP6	92	40.209	Meleagris_gallopavo
FBgn0039339	CG5116	88	35.565	ENSMMOG00000005950	gtpbp6	86	35.565	Mola_mola
FBgn0039339	CG5116	81	38.128	ENSMODG00000000326	GTPBP6	90	38.497	Monodelphis_domestica
FBgn0039339	CG5116	81	38.673	ENSMALG00000014993	gtpbp6	87	35.944	Monopterus_albus
FBgn0039339	CG5116	81	39.238	MGP_CAROLIEiJ_G0027536	Gtpbp6	82	39.456	Mus_caroli
FBgn0039339	CG5116	81	39.101	ENSMUSG00000033434	Gtpbp6	82	39.101	Mus_musculus
FBgn0039339	CG5116	81	39.101	MGP_SPRETEiJ_G0028534	Gtpbp6	82	39.318	Mus_spretus
FBgn0039339	CG5116	76	41.162	ENSMPUG00000001536	GTPBP6	85	41.162	Mustela_putorius_furo
FBgn0039339	CG5116	82	38.864	ENSNGAG00000011609	Gtpbp6	83	38.864	Nannospalax_galili
FBgn0039339	CG5116	86	38.085	ENSNBRG00000017629	gtpbp6	83	37.660	Neolamprologus_brichardi
FBgn0039339	CG5116	52	41.958	ENSMEUG00000001355	-	75	41.958	Notamacropus_eugenii
FBgn0039339	CG5116	79	41.038	ENSODEG00000001052	GTPBP6	81	40.521	Octodon_degus
FBgn0039339	CG5116	87	37.474	ENSONIG00000007330	gtpbp6	86	37.053	Oreochromis_niloticus
FBgn0039339	CG5116	81	31.136	ENSOANG00000007007	-	93	31.136	Ornithorhynchus_anatinus
FBgn0039339	CG5116	82	41.043	ENSOCUG00000008245	GTPBP6	82	41.043	Oryctolagus_cuniculus
FBgn0039339	CG5116	82	38.514	ENSORLG00000016077	gtpbp6	82	38.514	Oryzias_latipes
FBgn0039339	CG5116	82	38.514	ENSORLG00020018687	gtpbp6	81	38.514	Oryzias_latipes_hni
FBgn0039339	CG5116	82	37.838	ENSORLG00015014255	gtpbp6	81	37.838	Oryzias_latipes_hsok
FBgn0039339	CG5116	82	38.776	ENSOMEG00000004496	gtpbp6	82	38.776	Oryzias_melastigma
FBgn0039339	CG5116	82	38.813	ENSOGAG00000011327	GTPBP6	95	38.813	Otolemur_garnettii
FBgn0039339	CG5116	76	38.756	ENSOARG00000000946	GTPBP6	98	39.474	Ovis_aries
FBgn0039339	CG5116	69	41.398	ENSPPAG00000028400	-	80	41.398	Pan_paniscus
FBgn0039339	CG5116	81	35.945	ENSPPRG00000006710	-	80	36.446	Panthera_pardus
FBgn0039339	CG5116	81	39.130	ENSPPRG00000004932	-	83	39.130	Panthera_pardus
FBgn0039339	CG5116	82	40.046	ENSPTRG00000050696	GTPBP6	92	38.057	Pan_troglodytes
FBgn0039339	CG5116	82	38.444	ENSPANG00000011580	GTPBP6	82	38.444	Papio_anubis
FBgn0039339	CG5116	90	37.166	ENSPKIG00000022514	gtpbp6	82	37.166	Paramormyrops_kingsleyae
FBgn0039339	CG5116	77	39.663	ENSPSIG00000013117	GTPBP6	99	39.663	Pelodiscus_sinensis
FBgn0039339	CG5116	76	37.408	ENSPMAG00000006496	gtpbp6	98	37.408	Petromyzon_marinus
FBgn0039339	CG5116	81	37.757	ENSPCIG00000016456	GTPBP6	81	37.757	Phascolarctos_cinereus
FBgn0039339	CG5116	81	38.621	ENSPFOG00000015695	gtpbp6	99	39.216	Poecilia_formosa
FBgn0039339	CG5116	81	39.080	ENSPLAG00000015495	gtpbp6	81	39.080	Poecilia_latipinna
FBgn0039339	CG5116	81	39.540	ENSPMEG00000000859	gtpbp6	81	39.450	Poecilia_mexicana
FBgn0039339	CG5116	81	39.310	ENSPREG00000017643	gtpbp6	81	39.310	Poecilia_reticulata
FBgn0039339	CG5116	52	43.542	ENSPPYG00000020075	-	95	43.542	Pongo_abelii
FBgn0039339	CG5116	86	37.447	ENSPNYG00000000521	gtpbp6	82	37.021	Pundamilia_nyererei
FBgn0039339	CG5116	81	37.156	ENSPNAG00000002094	gtpbp6	76	37.156	Pygocentrus_nattereri
FBgn0039339	CG5116	81	39.318	ENSRNOG00000037426	Gtpbp6	82	39.318	Rattus_norvegicus
FBgn0039339	CG5116	81	39.318	ENSRNOG00000048168	Gtpbp6	82	39.318	Rattus_norvegicus
FBgn0039339	CG5116	82	40.639	ENSRBIG00000027538	GTPBP6	90	38.636	Rhinopithecus_bieti
FBgn0039339	CG5116	82	40.868	ENSRROG00000033503	GTPBP6	90	38.843	Rhinopithecus_roxellana
FBgn0039339	CG5116	81	38.952	ENSSHAG00000015570	GTPBP6	82	38.952	Sarcophilus_harrisii
FBgn0039339	CG5116	92	36.364	ENSSFOG00015004098	gtpbp6	83	36.364	Scleropages_formosus
FBgn0039339	CG5116	86	37.527	ENSSMAG00000019520	gtpbp6	85	36.777	Scophthalmus_maximus
FBgn0039339	CG5116	86	37.310	ENSSDUG00000002202	gtpbp6	87	36.217	Seriola_dumerili
FBgn0039339	CG5116	92	35.960	ENSSLDG00000023633	gtpbp6	95	35.960	Seriola_lalandi_dorsalis
FBgn0039339	CG5116	81	40.411	ENSSPUG00000005537	GTPBP6	82	40.411	Sphenodon_punctatus
FBgn0039339	CG5116	81	38.914	ENSSPAG00000017406	gtpbp6	83	38.298	Stegastes_partitus
FBgn0039339	CG5116	52	43.223	ENSSPAG00000017331	gtpbp6	87	43.223	Stegastes_partitus
FBgn0039339	CG5116	82	39.545	ENSSSCG00000033858	-	82	39.545	Sus_scrofa
FBgn0039339	CG5116	82	39.545	ENSSSCG00000037491	-	82	39.545	Sus_scrofa
FBgn0039339	CG5116	81	39.954	ENSTGUG00000010642	-	94	39.954	Taeniopygia_guttata
FBgn0039339	CG5116	86	38.280	ENSTRUG00000011175	gtpbp6	95	35.835	Takifugu_rubripes
FBgn0039339	CG5116	81	38.739	ENSTNIG00000010659	gtpbp6	98	38.739	Tetraodon_nigroviridis
FBgn0039339	CG5116	76	40.291	ENSUMAG00000018848	GTPBP6	98	40.291	Ursus_maritimus
FBgn0039339	CG5116	81	43.158	ENSVVUG00000008199	GTPBP6	66	43.158	Vulpes_vulpes
FBgn0039339	CG5116	82	37.783	ENSXETG00000004125	gtpbp6	80	37.783	Xenopus_tropicalis
FBgn0039339	CG5116	52	41.754	ENSXCOG00000006281	gtpbp6	56	41.754	Xiphophorus_couchianus
FBgn0039339	CG5116	81	38.391	ENSXMAG00000015980	gtpbp6	81	38.391	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005525	GTP binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0043022	ribosome binding	21873635.	IBA	Function