EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0039828 (Gene tree)
Gene ID: 43691
Gene Symbol: CG1542
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 1327 bases
Position: chr3R:31213458-31214784
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0085119	Ebp2	PF05890.12	2.5e-72	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0085757	-	1207	-	FBpp0085119	307 (aa)	-	Q9V9Z9

Gene Model

Click here to download FBgn0039828's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0039828's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0039828	CG1542	75	44.397	ENSG00000117395	EBNA1BP2	76	43.200	Homo_sapiens
FBgn0039828	CG1542	69	43.868	ENSAPOG00000011943	ebna1bp2	91	42.193	Acanthochromis_polyacanthus
FBgn0039828	CG1542	73	45.133	ENSAMEG00000001772	EBNA1BP2	71	44.958	Ailuropoda_melanoleuca
FBgn0039828	CG1542	94	40.000	ENSACIG00000011514	ebna1bp2	91	41.311	Amphilophus_citrinellus
FBgn0039828	CG1542	69	44.340	ENSAOCG00000005324	ebna1bp2	91	42.525	Amphiprion_ocellaris
FBgn0039828	CG1542	69	44.340	ENSAPEG00000011835	ebna1bp2	91	42.525	Amphiprion_percula
FBgn0039828	CG1542	95	39.809	ENSATEG00000020458	ebna1bp2	94	40.446	Anabas_testudineus
FBgn0039828	CG1542	80	42.308	ENSAPLG00000009109	EBNA1BP2	95	42.692	Anas_platyrhynchos
FBgn0039828	CG1542	99	43.034	ENSACAG00000013204	EBNA1BP2	97	43.038	Anolis_carolinensis
FBgn0039828	CG1542	94	43.377	ENSANAG00000038474	EBNA1BP2	99	42.188	Aotus_nancymaae
FBgn0039828	CG1542	98	37.812	ENSACLG00000000761	ebna1bp2	91	41.860	Astatotilapia_calliptera
FBgn0039828	CG1542	69	36.493	ENSAMXG00000042464	EBNA1BP2	85	36.752	Astyanax_mexicanus
FBgn0039828	CG1542	82	41.509	ENSAMXG00000018885	ebna1bp2	92	41.000	Astyanax_mexicanus
FBgn0039828	CG1542	69	46.698	ENSBTAG00000021544	EBNA1BP2	74	44.672	Bos_taurus
FBgn0039828	CG1542	71	35.616	WBGene00015941	C18A3.3	56	35.160	Caenorhabditis_elegans
FBgn0039828	CG1542	93	43.607	ENSCJAG00000003318	EBNA1BP2	92	43.607	Callithrix_jacchus
FBgn0039828	CG1542	75	45.259	ENSCAFG00000005336	EBNA1BP2	73	44.758	Canis_familiaris
FBgn0039828	CG1542	75	45.259	ENSCAFG00020017662	EBNA1BP2	73	44.758	Canis_lupus_dingo
FBgn0039828	CG1542	73	45.575	ENSCHIG00000022065	EBNA1BP2	98	43.574	Capra_hircus
FBgn0039828	CG1542	69	45.755	ENSTSYG00000003666	EBNA1BP2	68	45.536	Carlito_syrichta
FBgn0039828	CG1542	69	45.794	ENSCPOG00000005187	EBNA1BP2	68	45.575	Cavia_porcellus
FBgn0039828	CG1542	94	43.377	ENSCCAG00000025326	EBNA1BP2	99	42.188	Cebus_capucinus
FBgn0039828	CG1542	94	43.092	ENSCATG00000037761	EBNA1BP2	72	42.236	Cercocebus_atys
FBgn0039828	CG1542	69	47.222	ENSCLAG00000002547	EBNA1BP2	68	46.930	Chinchilla_lanigera
FBgn0039828	CG1542	94	43.046	ENSCSAG00000001177	EBNA1BP2	84	42.188	Chlorocebus_sabaeus
FBgn0039828	CG1542	69	45.283	ENSCPBG00000002595	EBNA1BP2	64	45.283	Chrysemys_picta_bellii
FBgn0039828	CG1542	55	40.556	ENSCING00000013374	-	99	40.556	Ciona_intestinalis
FBgn0039828	CG1542	93	38.127	ENSCSAVG00000004452	-	94	38.111	Ciona_savignyi
FBgn0039828	CG1542	94	42.715	ENSCANG00000028459	EBNA1BP2	99	41.875	Colobus_angolensis_palliatus
FBgn0039828	CG1542	75	42.174	ENSCGRG00001002074	Ebna1bp2	67	43.231	Cricetulus_griseus_chok1gshd
FBgn0039828	CG1542	75	42.174	ENSCGRG00000007272	Ebna1bp2	67	43.231	Cricetulus_griseus_crigri
FBgn0039828	CG1542	98	41.538	ENSCSEG00000018795	ebna1bp2	96	41.538	Cynoglossus_semilaevis
FBgn0039828	CG1542	69	43.868	ENSCVAG00000004152	ebna1bp2	91	41.503	Cyprinodon_variegatus
FBgn0039828	CG1542	93	42.333	ENSDARG00000054980	ebna1bp2	96	42.492	Danio_rerio
FBgn0039828	CG1542	94	42.434	ENSDNOG00000024715	EBNA1BP2	95	42.405	Dasypus_novemcinctus
FBgn0039828	CG1542	88	45.907	ENSEBUG00000011134	ebna1bp2	91	43.849	Eptatretus_burgeri
FBgn0039828	CG1542	73	45.133	ENSEASG00005001399	EBNA1BP2	73	44.583	Equus_asinus_asinus
FBgn0039828	CG1542	73	45.133	ENSECAG00000024179	EBNA1BP2	73	44.583	Equus_caballus
FBgn0039828	CG1542	76	44.215	ENSEEUG00000003662	EBNA1BP2	77	43.411	Erinaceus_europaeus
FBgn0039828	CG1542	82	44.161	ENSELUG00000021634	ebna1bp2	62	47.887	Esox_lucius
FBgn0039828	CG1542	75	45.652	ENSFCAG00000022345	EBNA1BP2	64	45.455	Felis_catus
FBgn0039828	CG1542	74	43.172	ENSFALG00000005658	EBNA1BP2	72	44.262	Ficedula_albicollis
FBgn0039828	CG1542	69	45.370	ENSFDAG00000013559	EBNA1BP2	68	45.175	Fukomys_damarensis
FBgn0039828	CG1542	98	39.441	ENSFHEG00000001475	ebna1bp2	95	40.566	Fundulus_heteroclitus
FBgn0039828	CG1542	68	44.076	ENSGMOG00000004150	ebna1bp2	67	44.076	Gadus_morhua
FBgn0039828	CG1542	73	42.667	ENSGAFG00000008885	ebna1bp2	97	40.498	Gambusia_affinis
FBgn0039828	CG1542	71	44.292	ENSGACG00000006802	ebna1bp2	95	42.718	Gasterosteus_aculeatus
FBgn0039828	CG1542	94	41.118	ENSGAGG00000018237	EBNA1BP2	70	43.777	Gopherus_agassizii
FBgn0039828	CG1542	75	44.397	ENSGGOG00000008724	EBNA1BP2	65	43.200	Gorilla_gorilla
FBgn0039828	CG1542	98	37.500	ENSHBUG00000023329	ebna1bp2	91	41.528	Haplochromis_burtoni
FBgn0039828	CG1542	69	43.981	ENSHGLG00000002849	-	70	42.918	Heterocephalus_glaber_female
FBgn0039828	CG1542	69	35.849	ENSHGLG00000010340	-	64	36.161	Heterocephalus_glaber_female
FBgn0039828	CG1542	69	43.981	ENSHGLG00100014766	EBNA1BP2	70	42.918	Heterocephalus_glaber_male
FBgn0039828	CG1542	98	39.385	ENSHCOG00000004832	ebna1bp2	95	38.037	Hippocampus_comes
FBgn0039828	CG1542	83	42.264	ENSIPUG00000013642	ebna1bp2	100	40.923	Ictalurus_punctatus
FBgn0039828	CG1542	75	44.206	ENSJJAG00000012002	Ebna1bp2	72	45.000	Jaculus_jaculus
FBgn0039828	CG1542	98	39.198	ENSKMAG00000010961	ebna1bp2	98	38.066	Kryptolebias_marmoratus
FBgn0039828	CG1542	78	45.417	ENSLBEG00000014254	ebna1bp2	93	44.118	Labrus_bergylta
FBgn0039828	CG1542	99	41.515	ENSLOCG00000006438	ebna1bp2	97	42.121	Lepisosteus_oculatus
FBgn0039828	CG1542	73	45.852	ENSLAFG00000018681	EBNA1BP2	73	45.868	Loxodonta_africana
FBgn0039828	CG1542	94	42.715	ENSMFAG00000037826	EBNA1BP2	99	41.875	Macaca_fascicularis
FBgn0039828	CG1542	94	42.715	ENSMMUG00000002640	EBNA1BP2	99	41.875	Macaca_mulatta
FBgn0039828	CG1542	73	44.690	ENSMNEG00000029376	EBNA1BP2	70	42.742	Macaca_nemestrina
FBgn0039828	CG1542	94	43.092	ENSMLEG00000028431	EBNA1BP2	64	43.200	Mandrillus_leucophaeus
FBgn0039828	CG1542	69	47.170	ENSMAMG00000009561	ebna1bp2	91	43.831	Mastacembelus_armatus
FBgn0039828	CG1542	98	37.812	ENSMZEG00005018968	ebna1bp2	91	41.860	Maylandia_zebra
FBgn0039828	CG1542	80	43.295	ENSMGAG00000009689	EBNA1BP2	96	43.678	Meleagris_gallopavo
FBgn0039828	CG1542	75	42.609	ENSMAUG00000011372	Ebna1bp2	67	43.668	Mesocricetus_auratus
FBgn0039828	CG1542	94	41.722	ENSMICG00000007000	EBNA1BP2	73	43.277	Microcebus_murinus
FBgn0039828	CG1542	80	43.548	ENSMOCG00000019273	Ebna1bp2	74	43.725	Microtus_ochrogaster
FBgn0039828	CG1542	68	44.762	ENSMMOG00000001755	ebna1bp2	93	40.065	Mola_mola
FBgn0039828	CG1542	85	47.794	ENSMODG00000011412	EBNA1BP2	88	47.794	Monodelphis_domestica
FBgn0039828	CG1542	73	42.982	ENSMALG00000017391	ebna1bp2	68	42.982	Monopterus_albus
FBgn0039828	CG1542	77	42.616	MGP_CAROLIEiJ_G0026381	Ebna1bp2	85	43.678	Mus_caroli
FBgn0039828	CG1542	77	42.616	ENSMUSG00000028729	Ebna1bp2	85	43.678	Mus_musculus
FBgn0039828	CG1542	77	42.616	MGP_PahariEiJ_G0028712	Ebna1bp2	85	43.678	Mus_pahari
FBgn0039828	CG1542	99	42.284	MGP_SPRETEiJ_G0027353	Ebna1bp2	99	41.667	Mus_spretus
FBgn0039828	CG1542	73	45.133	ENSMPUG00000013779	EBNA1BP2	73	44.583	Mustela_putorius_furo
FBgn0039828	CG1542	94	42.904	ENSMLUG00000003809	-	97	42.540	Myotis_lucifugus
FBgn0039828	CG1542	66	44.554	ENSMLUG00000011409	-	73	43.119	Myotis_lucifugus
FBgn0039828	CG1542	69	46.262	ENSNGAG00000019110	Ebna1bp2	67	44.828	Nannospalax_galili
FBgn0039828	CG1542	98	38.125	ENSNBRG00000018937	ebna1bp2	91	42.193	Neolamprologus_brichardi
FBgn0039828	CG1542	62	45.550	ENSNLEG00000013236	-	73	43.478	Nomascus_leucogenys
FBgn0039828	CG1542	97	34.615	ENSMEUG00000010924	-	99	34.615	Notamacropus_eugenii
FBgn0039828	CG1542	69	39.151	ENSOPRG00000016032	-	68	38.839	Ochotona_princeps
FBgn0039828	CG1542	69	45.833	ENSODEG00000001868	EBNA1BP2	70	44.017	Octodon_degus
FBgn0039828	CG1542	99	37.771	ENSONIG00000008855	ebna1bp2	97	40.938	Oreochromis_niloticus
FBgn0039828	CG1542	93	42.857	ENSOANG00000001141	EBNA1BP2	92	42.857	Ornithorhynchus_anatinus
FBgn0039828	CG1542	69	44.340	ENSOCUG00000005103	EBNA1BP2	68	43.750	Oryctolagus_cuniculus
FBgn0039828	CG1542	98	41.640	ENSORLG00000010609	ebna1bp2	96	42.587	Oryzias_latipes
FBgn0039828	CG1542	98	41.640	ENSORLG00020009809	ebna1bp2	96	42.587	Oryzias_latipes_hni
FBgn0039828	CG1542	98	41.325	ENSORLG00015005799	ebna1bp2	96	42.271	Oryzias_latipes_hsok
FBgn0039828	CG1542	93	42.140	ENSOMEG00000008553	ebna1bp2	91	43.522	Oryzias_melastigma
FBgn0039828	CG1542	80	43.083	ENSOGAG00000002687	-	82	42.754	Otolemur_garnettii
FBgn0039828	CG1542	76	30.992	ENSOGAG00000028686	-	94	30.992	Otolemur_garnettii
FBgn0039828	CG1542	69	46.698	ENSOARG00000020502	EBNA1BP2	88	46.429	Ovis_aries
FBgn0039828	CG1542	75	44.397	ENSPPAG00000038260	EBNA1BP2	65	43.200	Pan_paniscus
FBgn0039828	CG1542	73	46.460	ENSPPRG00000005080	EBNA1BP2	73	45.833	Panthera_pardus
FBgn0039828	CG1542	73	46.460	ENSPTIG00000006570	EBNA1BP2	73	45.643	Panthera_tigris_altaica
FBgn0039828	CG1542	75	44.397	ENSPTRG00000000625	EBNA1BP2	65	43.200	Pan_troglodytes
FBgn0039828	CG1542	94	43.046	ENSPANG00000015351	EBNA1BP2	75	43.145	Papio_anubis
FBgn0039828	CG1542	83	42.424	ENSPKIG00000011907	ebna1bp2	70	44.444	Paramormyrops_kingsleyae
FBgn0039828	CG1542	69	43.256	ENSPSIG00000003073	EBNA1BP2	63	41.880	Pelodiscus_sinensis
FBgn0039828	CG1542	94	42.857	ENSPMGG00000010627	ebna1bp2	95	41.195	Periophthalmus_magnuspinnatus
FBgn0039828	CG1542	75	43.043	ENSPEMG00000014135	Ebna1bp2	68	43.043	Peromyscus_maniculatus_bairdii
FBgn0039828	CG1542	97	44.514	ENSPCIG00000013641	EBNA1BP2	77	44.514	Phascolarctos_cinereus
FBgn0039828	CG1542	83	43.243	ENSPFOG00000006385	ebna1bp2	90	42.679	Poecilia_formosa
FBgn0039828	CG1542	83	44.015	ENSPLAG00000001407	ebna1bp2	98	43.302	Poecilia_latipinna
FBgn0039828	CG1542	83	42.857	ENSPMEG00000000536	ebna1bp2	98	42.368	Poecilia_mexicana
FBgn0039828	CG1542	98	40.248	ENSPREG00000021076	ebna1bp2	98	39.252	Poecilia_reticulata
FBgn0039828	CG1542	75	43.966	ENSPPYG00000001456	-	99	42.800	Pongo_abelii
FBgn0039828	CG1542	94	42.951	ENSPCOG00000023100	EBNA1BP2	73	44.813	Propithecus_coquereli
FBgn0039828	CG1542	69	45.755	ENSPVAG00000011448	EBNA1BP2	74	43.802	Pteropus_vampyrus
FBgn0039828	CG1542	98	37.812	ENSPNYG00000017056	ebna1bp2	91	41.860	Pundamilia_nyererei
FBgn0039828	CG1542	75	45.726	ENSPNAG00000017674	ebna1bp2	100	43.827	Pygocentrus_nattereri
FBgn0039828	CG1542	77	43.882	ENSRNOG00000050287	Ebna1bp2	72	43.882	Rattus_norvegicus
FBgn0039828	CG1542	77	43.882	ENSRNOG00000045760	LOC108348080	72	43.882	Rattus_norvegicus
FBgn0039828	CG1542	94	43.046	ENSRBIG00000034587	EBNA1BP2	64	43.145	Rhinopithecus_bieti
FBgn0039828	CG1542	94	43.046	ENSRROG00000012178	EBNA1BP2	64	43.145	Rhinopithecus_roxellana
FBgn0039828	CG1542	94	43.377	ENSSBOG00000033483	EBNA1BP2	97	42.994	Saimiri_boliviensis_boliviensis
FBgn0039828	CG1542	92	41.554	ENSSFOG00015000181	ebna1bp2	99	41.615	Scleropages_formosus
FBgn0039828	CG1542	94	40.909	ENSSMAG00000020600	ebna1bp2	93	38.838	Scophthalmus_maximus
FBgn0039828	CG1542	93	42.810	ENSSDUG00000013791	ebna1bp2	91	43.322	Seriola_dumerili
FBgn0039828	CG1542	98	42.105	ENSSLDG00000001599	ebna1bp2	91	42.997	Seriola_lalandi_dorsalis
FBgn0039828	CG1542	94	34.106	ENSSARG00000013397	EBNA1BP2	97	33.856	Sorex_araneus
FBgn0039828	CG1542	98	40.741	ENSSPAG00000005176	ebna1bp2	91	42.623	Stegastes_partitus
FBgn0039828	CG1542	69	45.755	ENSSSCG00000030177	EBNA1BP2	67	45.536	Sus_scrofa
FBgn0039828	CG1542	68	44.712	ENSTGUG00000007072	-	74	44.262	Taeniopygia_guttata
FBgn0039828	CG1542	56	45.349	ENSTGUG00000016447	-	95	42.481	Taeniopygia_guttata
FBgn0039828	CG1542	94	41.748	ENSTRUG00000018483	ebna1bp2	92	41.748	Takifugu_rubripes
FBgn0039828	CG1542	86	42.029	ENSTNIG00000018092	ebna1bp2	93	42.345	Tetraodon_nigroviridis
FBgn0039828	CG1542	69	34.434	ENSTBEG00000011855	EBNA1BP2	68	34.821	Tupaia_belangeri
FBgn0039828	CG1542	94	40.850	ENSTTRG00000008056	EBNA1BP2	99	40.123	Tursiops_truncatus
FBgn0039828	CG1542	73	45.133	ENSUAMG00000024165	EBNA1BP2	74	44.215	Ursus_americanus
FBgn0039828	CG1542	73	45.133	ENSUMAG00000024357	EBNA1BP2	74	44.215	Ursus_maritimus
FBgn0039828	CG1542	66	41.872	ENSVPAG00000002132	EBNA1BP2	75	42.932	Vicugna_pacos
FBgn0039828	CG1542	75	45.259	ENSVVUG00000008712	EBNA1BP2	73	44.758	Vulpes_vulpes
FBgn0039828	CG1542	97	42.857	ENSXETG00000009545	ebna1bp2	96	42.857	Xenopus_tropicalis
FBgn0039828	CG1542	81	42.063	ENSXCOG00000007104	ebna1bp2	95	37.846	Xiphophorus_couchianus
FBgn0039828	CG1542	73	43.111	ENSXMAG00000011341	ebna1bp2	97	41.824	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	ISS	Function
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISS	Component
GO:0006364	rRNA processing	21873635.	IBA	Process
GO:0006364	rRNA processing	-	ISS	Process
GO:0030687	preribosome, large subunit precursor	21873635.	IBA	Component
GO:0034399	nuclear periphery	21873635.	IBA	Component
GO:0042273	ribosomal large subunit biogenesis	21873635.	IBA	Process