EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0039846 (Gene tree)
Gene ID: 43710
Gene Symbol: PNPase
Alias: -
Full Name: Polynucleotide phosphorylase
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 3893 bases
Position: chr3R:31401560-31405452
Accession: FBgn0039846
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0085172	RNase_PH	PF01138.21	1.5e-41	1	2
FBpp0085172	RNase_PH	PF01138.21	1.5e-41	2	2
FBpp0085173	RNase_PH	PF01138.21	1.5e-41	1	2
FBpp0085173	RNase_PH	PF01138.21	1.5e-41	2	2
FBpp0290103	RNase_PH	PF01138.21	1.5e-41	1	2
FBpp0290103	RNase_PH	PF01138.21	1.5e-41	2	2
FBpp0306620	RNase_PH	PF01138.21	1.5e-41	1	2
FBpp0306620	RNase_PH	PF01138.21	1.5e-41	2	2
FBpp0085172	PNPase	PF03726.14	2.7e-09	1	1
FBpp0085173	PNPase	PF03726.14	2.7e-09	1	1
FBpp0290103	PNPase	PF03726.14	2.7e-09	1	1
FBpp0306620	PNPase	PF03726.14	2.7e-09	1	1
FBpp0085172	RNase_PH_C	PF03725.15	7.7e-18	1	1
FBpp0085173	RNase_PH_C	PF03725.15	7.7e-18	1	1
FBpp0290103	RNase_PH_C	PF03725.15	7.7e-18	1	1
FBpp0306620	RNase_PH_C	PF03725.15	7.7e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0085811	-	2762	-	FBpp0085172	771 (aa)	-	Q9V9X7
FBtr0300881	-	2821	-	FBpp0290103	771 (aa)	-	Q9V9X7
FBtr0334553	-	2647	-	FBpp0306620	771 (aa)	-	Q5U1D1
FBtr0085812	-	2668	-	FBpp0085173	771 (aa)	-	Q9V9X7

Gene Model

Click here to download FBgn0039846's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0039846's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0039846	PNPase	95	57.337	ENSG00000138035	PNPT1	93	57.337	Homo_sapiens
FBgn0039846	PNPase	93	56.643	ENSAPOG00000005581	PNPT1	97	55.076	Acanthochromis_polyacanthus
FBgn0039846	PNPase	93	58.380	ENSAMEG00000003772	PNPT1	91	58.380	Ailuropoda_melanoleuca
FBgn0039846	PNPase	92	57.264	ENSACIG00000010140	PNPT1	98	57.264	Amphilophus_citrinellus
FBgn0039846	PNPase	95	56.498	ENSAOCG00000020109	PNPT1	95	56.498	Amphiprion_ocellaris
FBgn0039846	PNPase	93	55.679	ENSAPEG00000002299	PNPT1	96	55.679	Amphiprion_percula
FBgn0039846	PNPase	93	57.762	ENSATEG00000011164	PNPT1	93	57.762	Anabas_testudineus
FBgn0039846	PNPase	93	58.693	ENSAPLG00000002885	PNPT1	97	58.693	Anas_platyrhynchos
FBgn0039846	PNPase	95	58.967	ENSACAG00000003692	PNPT1	92	58.967	Anolis_carolinensis
FBgn0039846	PNPase	95	56.793	ENSANAG00000023709	PNPT1	93	56.793	Aotus_nancymaae
FBgn0039846	PNPase	93	57.143	ENSACLG00000024267	PNPT1	92	57.143	Astatotilapia_calliptera
FBgn0039846	PNPase	92	56.338	ENSAMXG00000042321	PNPT1	98	56.338	Astyanax_mexicanus
FBgn0039846	PNPase	94	57.692	ENSBTAG00000008909	PNPT1	92	57.750	Bos_taurus
FBgn0039846	PNPase	93	41.307	WBGene00015266	BE0003N10.1	96	41.307	Caenorhabditis_elegans
FBgn0039846	PNPase	95	56.522	ENSCJAG00000009740	PNPT1	93	56.522	Callithrix_jacchus
FBgn0039846	PNPase	95	52.909	ENSCAFG00000002891	PNPT1	93	52.973	Canis_familiaris
FBgn0039846	PNPase	95	57.065	ENSCAFG00020026841	PNPT1	93	57.065	Canis_lupus_dingo
FBgn0039846	PNPase	94	56.155	ENSCHIG00000025034	PNPT1	91	56.155	Capra_hircus
FBgn0039846	PNPase	94	57.459	ENSTSYG00000006536	PNPT1	92	57.459	Carlito_syrichta
FBgn0039846	PNPase	92	50.696	ENSCAPG00000013300	PNPT1	97	50.696	Cavia_aperea
FBgn0039846	PNPase	95	58.503	ENSCPOG00000011008	PNPT1	93	58.503	Cavia_porcellus
FBgn0039846	PNPase	93	57.343	ENSCCAG00000037909	PNPT1	91	57.343	Cebus_capucinus
FBgn0039846	PNPase	95	55.707	ENSCATG00000031551	PNPT1	93	55.707	Cercocebus_atys
FBgn0039846	PNPase	92	44.242	ENSCATG00000036442	-	92	44.242	Cercocebus_atys
FBgn0039846	PNPase	95	57.687	ENSCLAG00000006240	PNPT1	93	57.687	Chinchilla_lanigera
FBgn0039846	PNPase	95	57.123	ENSCSAG00000014324	PNPT1	93	57.123	Chlorocebus_sabaeus
FBgn0039846	PNPase	92	50.562	ENSCHOG00000007360	PNPT1	97	50.562	Choloepus_hoffmanni
FBgn0039846	PNPase	95	57.337	ENSCPBG00000020856	PNPT1	92	57.337	Chrysemys_picta_bellii
FBgn0039846	PNPase	94	57.873	ENSCANG00000034019	PNPT1	92	57.873	Colobus_angolensis_palliatus
FBgn0039846	PNPase	94	45.241	ENSCANG00000028159	-	93	45.798	Colobus_angolensis_palliatus
FBgn0039846	PNPase	99	56.371	ENSCGRG00001012245	Pnpt1	97	56.371	Cricetulus_griseus_chok1gshd
FBgn0039846	PNPase	99	56.753	ENSCGRG00000007624	Pnpt1	97	56.753	Cricetulus_griseus_crigri
FBgn0039846	PNPase	92	56.799	ENSCSEG00000000809	PNPT1	98	56.799	Cynoglossus_semilaevis
FBgn0039846	PNPase	77	57.249	ENSCVAG00000010037	PNPT1	95	57.249	Cyprinodon_variegatus
FBgn0039846	PNPase	93	58.123	ENSDNOG00000046753	PNPT1	91	58.123	Dasypus_novemcinctus
FBgn0039846	PNPase	96	56.933	ENSDORG00000011409	Pnpt1	95	56.933	Dipodomys_ordii
FBgn0039846	PNPase	81	51.439	ENSETEG00000001582	-	87	44.702	Echinops_telfairi
FBgn0039846	PNPase	93	42.897	ENSEBUG00000010305	PNPT1	93	42.897	Eptatretus_burgeri
FBgn0039846	PNPase	93	58.403	ENSEASG00005001974	PNPT1	91	58.462	Equus_asinus_asinus
FBgn0039846	PNPase	93	58.263	ENSECAG00000020058	PNPT1	95	58.273	Equus_caballus
FBgn0039846	PNPase	97	52.249	ENSEEUG00000015610	PNPT1	96	52.249	Erinaceus_europaeus
FBgn0039846	PNPase	95	55.267	ENSELUG00000004795	PNPT1	95	55.267	Esox_lucius
FBgn0039846	PNPase	93	58.403	ENSFCAG00000013236	PNPT1	91	58.462	Felis_catus
FBgn0039846	PNPase	92	58.287	ENSFALG00000011214	PNPT1	97	58.287	Ficedula_albicollis
FBgn0039846	PNPase	96	57.047	ENSFDAG00000017446	PNPT1	95	57.047	Fukomys_damarensis
FBgn0039846	PNPase	95	56.635	ENSFHEG00000006495	PNPT1	97	57.483	Fundulus_heteroclitus
FBgn0039846	PNPase	95	55.525	ENSGMOG00000006805	PNPT1	95	55.525	Gadus_morhua
FBgn0039846	PNPase	96	57.604	ENSGALG00000043545	PNPT1	93	57.604	Gallus_gallus
FBgn0039846	PNPase	93	56.503	ENSGAFG00000019681	PNPT1	97	54.972	Gambusia_affinis
FBgn0039846	PNPase	93	55.509	ENSGACG00000010840	PNPT1	93	55.509	Gasterosteus_aculeatus
FBgn0039846	PNPase	95	57.337	ENSGGOG00000006867	PNPT1	93	57.337	Gorilla_gorilla
FBgn0039846	PNPase	95	47.483	ENSGGOG00000041496	-	93	47.483	Gorilla_gorilla
FBgn0039846	PNPase	93	57.143	ENSHBUG00000013041	PNPT1	94	56.303	Haplochromis_burtoni
FBgn0039846	PNPase	95	56.599	ENSHGLG00000007480	PNPT1	93	56.658	Heterocephalus_glaber_female
FBgn0039846	PNPase	84	51.393	ENSHGLG00000010054	-	90	51.393	Heterocephalus_glaber_female
FBgn0039846	PNPase	92	49.719	ENSHGLG00100007397	-	92	49.790	Heterocephalus_glaber_male
FBgn0039846	PNPase	95	56.599	ENSHGLG00100010920	PNPT1	93	56.658	Heterocephalus_glaber_male
FBgn0039846	PNPase	91	48.355	ENSHCOG00000002817	PNPT1	94	48.355	Hippocampus_comes
FBgn0039846	PNPase	93	54.406	ENSIPUG00000014624	PNPT1	97	54.406	Ictalurus_punctatus
FBgn0039846	PNPase	94	58.011	ENSSTOG00000006304	PNPT1	92	58.011	Ictidomys_tridecemlineatus
FBgn0039846	PNPase	95	56.871	ENSJJAG00000019227	Pnpt1	93	56.871	Jaculus_jaculus
FBgn0039846	PNPase	95	56.301	ENSKMAG00000017389	PNPT1	94	56.301	Kryptolebias_marmoratus
FBgn0039846	PNPase	93	56.443	ENSLBEG00000027692	PNPT1	96	55.882	Labrus_bergylta
FBgn0039846	PNPase	90	56.312	ENSLACG00000011059	PNPT1	98	57.267	Latimeria_chalumnae
FBgn0039846	PNPase	96	56.359	ENSLOCG00000015375	PNPT1	92	56.359	Lepisosteus_oculatus
FBgn0039846	PNPase	93	55.340	ENSLAFG00000021462	PNPT1	91	55.402	Loxodonta_africana
FBgn0039846	PNPase	95	57.201	ENSMFAG00000001927	PNPT1	93	57.201	Macaca_fascicularis
FBgn0039846	PNPase	78	57.065	ENSMMUG00000007003	PNPT1	97	57.065	Macaca_mulatta
FBgn0039846	PNPase	93	57.902	ENSMNEG00000038589	PNPT1	97	57.924	Macaca_nemestrina
FBgn0039846	PNPase	95	55.027	ENSMLEG00000038706	PNPT1	93	55.027	Mandrillus_leucophaeus
FBgn0039846	PNPase	92	42.978	ENSMLEG00000028524	-	92	43.539	Mandrillus_leucophaeus
FBgn0039846	PNPase	93	55.524	ENSMAMG00000021954	PNPT1	93	55.524	Mastacembelus_armatus
FBgn0039846	PNPase	93	57.143	ENSMZEG00005027363	PNPT1	94	56.303	Maylandia_zebra
FBgn0039846	PNPase	93	58.799	ENSMGAG00000001952	PNPT1	97	58.799	Meleagris_gallopavo
FBgn0039846	PNPase	97	56.818	ENSMAUG00000013652	Pnpt1	93	56.818	Mesocricetus_auratus
FBgn0039846	PNPase	94	57.793	ENSMICG00000009369	PNPT1	92	57.793	Microcebus_murinus
FBgn0039846	PNPase	95	56.599	ENSMOCG00000002820	Pnpt1	93	56.658	Microtus_ochrogaster
FBgn0039846	PNPase	91	52.891	ENSMMOG00000007480	PNPT1	98	52.891	Mola_mola
FBgn0039846	PNPase	94	57.592	ENSMODG00000001984	PNPT1	93	57.592	Monodelphis_domestica
FBgn0039846	PNPase	97	55.099	ENSMALG00000018484	PNPT1	98	55.099	Monopterus_albus
FBgn0039846	PNPase	95	56.386	MGP_CAROLIEiJ_G0016153	Pnpt1	93	56.386	Mus_caroli
FBgn0039846	PNPase	95	56.250	ENSMUSG00000020464	Pnpt1	93	56.250	Mus_musculus
FBgn0039846	PNPase	95	56.793	MGP_PahariEiJ_G0016737	Pnpt1	93	56.793	Mus_pahari
FBgn0039846	PNPase	95	56.522	MGP_SPRETEiJ_G0016996	Pnpt1	97	56.522	Mus_spretus
FBgn0039846	PNPase	94	57.989	ENSMPUG00000002353	PNPT1	92	57.989	Mustela_putorius_furo
FBgn0039846	PNPase	95	57.104	ENSMLUG00000003886	PNPT1	93	57.104	Myotis_lucifugus
FBgn0039846	PNPase	99	56.047	ENSNGAG00000020856	-	98	56.047	Nannospalax_galili
FBgn0039846	PNPase	69	54.614	ENSNBRG00000012517	PNPT1	85	54.614	Neolamprologus_brichardi
FBgn0039846	PNPase	95	56.114	ENSNLEG00000009354	PNPT1	93	56.114	Nomascus_leucogenys
FBgn0039846	PNPase	95	43.631	ENSNLEG00000003327	-	92	43.631	Nomascus_leucogenys
FBgn0039846	PNPase	94	55.724	ENSOPRG00000010232	-	92	55.724	Ochotona_princeps
FBgn0039846	PNPase	95	56.871	ENSODEG00000012137	PNPT1	93	56.871	Octodon_degus
FBgn0039846	PNPase	93	57.143	ENSONIG00000000983	PNPT1	91	57.143	Oreochromis_niloticus
FBgn0039846	PNPase	89	58.806	ENSOANG00000011178	PNPT1	97	58.806	Ornithorhynchus_anatinus
FBgn0039846	PNPase	94	57.793	ENSOCUG00000006889	PNPT1	92	57.793	Oryctolagus_cuniculus
FBgn0039846	PNPase	97	55.260	ENSORLG00000004335	PNPT1	94	55.260	Oryzias_latipes
FBgn0039846	PNPase	97	55.526	ENSORLG00015018951	PNPT1	98	56.802	Oryzias_latipes_hsok
FBgn0039846	PNPase	94	55.890	ENSOGAG00000009840	PNPT1	92	55.890	Otolemur_garnettii
FBgn0039846	PNPase	94	57.873	ENSOARG00000002164	PNPT1	92	57.931	Ovis_aries
FBgn0039846	PNPase	93	45.518	ENSPPAG00000040514	-	89	45.518	Pan_paniscus
FBgn0039846	PNPase	80	56.726	ENSPPAG00000024705	PNPT1	87	56.726	Pan_paniscus
FBgn0039846	PNPase	93	58.322	ENSPPRG00000001366	PNPT1	91	58.322	Panthera_pardus
FBgn0039846	PNPase	93	58.263	ENSPTIG00000014915	PNPT1	91	58.322	Panthera_tigris_altaica
FBgn0039846	PNPase	95	44.218	ENSPTRG00000051411	-	93	44.218	Pan_troglodytes
FBgn0039846	PNPase	95	57.337	ENSPTRG00000011934	PNPT1	93	57.337	Pan_troglodytes
FBgn0039846	PNPase	95	57.201	ENSPANG00000022846	PNPT1	93	57.201	Papio_anubis
FBgn0039846	PNPase	95	56.486	ENSPKIG00000021612	PNPT1	97	54.508	Paramormyrops_kingsleyae
FBgn0039846	PNPase	95	57.609	ENSPSIG00000013120	PNPT1	95	57.609	Pelodiscus_sinensis
FBgn0039846	PNPase	96	56.533	ENSPEMG00000004284	Pnpt1	95	56.533	Peromyscus_maniculatus_bairdii
FBgn0039846	PNPase	92	57.243	ENSPMAG00000008932	PNPT1	97	57.243	Petromyzon_marinus
FBgn0039846	PNPase	93	57.143	ENSPCIG00000010236	PNPT1	91	57.143	Phascolarctos_cinereus
FBgn0039846	PNPase	93	56.364	ENSPFOG00000010229	PNPT1	93	56.364	Poecilia_formosa
FBgn0039846	PNPase	93	56.364	ENSPLAG00000009008	PNPT1	95	54.951	Poecilia_latipinna
FBgn0039846	PNPase	93	56.224	ENSPMEG00000004192	PNPT1	97	56.105	Poecilia_mexicana
FBgn0039846	PNPase	92	56.399	ENSPREG00000003072	PNPT1	98	56.399	Poecilia_reticulata
FBgn0039846	PNPase	95	57.201	ENSPPYG00000012399	PNPT1	93	57.201	Pongo_abelii
FBgn0039846	PNPase	92	51.404	ENSPCAG00000010806	PNPT1	97	51.404	Procavia_capensis
FBgn0039846	PNPase	92	51.676	ENSPCOG00000015664	PNPT1	97	51.676	Propithecus_coquereli
FBgn0039846	PNPase	73	50.663	ENSPVAG00000005379	PNPT1	80	46.205	Pteropus_vampyrus
FBgn0039846	PNPase	93	55.882	ENSPNYG00000000363	PNPT1	94	55.882	Pundamilia_nyererei
FBgn0039846	PNPase	93	56.145	ENSPNAG00000010891	PNPT1	93	56.145	Pygocentrus_nattereri
FBgn0039846	PNPase	95	56.793	ENSRNOG00000003600	Pnpt1	93	56.793	Rattus_norvegicus
FBgn0039846	PNPase	94	57.597	ENSRBIG00000043016	PNPT1	92	57.597	Rhinopithecus_bieti
FBgn0039846	PNPase	94	57.459	ENSRROG00000040537	PNPT1	92	57.459	Rhinopithecus_roxellana
FBgn0039846	PNPase	90	57.576	ENSSBOG00000032574	PNPT1	97	57.267	Saimiri_boliviensis_boliviensis
FBgn0039846	PNPase	61	59.494	ENSSHAG00000014040	PNPT1	96	59.494	Sarcophilus_harrisii
FBgn0039846	PNPase	92	51.264	ENSSFOG00015017596	PNPT1	93	51.264	Scleropages_formosus
FBgn0039846	PNPase	95	55.404	ENSSMAG00000018471	PNPT1	97	55.245	Scophthalmus_maximus
FBgn0039846	PNPase	95	56.267	ENSSDUG00000018584	PNPT1	95	56.267	Seriola_dumerili
FBgn0039846	PNPase	95	55.995	ENSSLDG00000023385	PNPT1	97	56.188	Seriola_lalandi_dorsalis
FBgn0039846	PNPase	82	53.263	ENSSARG00000012819	PNPT1	80	53.361	Sorex_araneus
FBgn0039846	PNPase	95	57.279	ENSSPUG00000011785	PNPT1	94	57.279	Sphenodon_punctatus
FBgn0039846	PNPase	95	55.814	ENSSPAG00000016880	PNPT1	97	55.278	Stegastes_partitus
FBgn0039846	PNPase	95	57.945	ENSSSCG00000031882	PNPT1	92	57.945	Sus_scrofa
FBgn0039846	PNPase	93	57.762	ENSTGUG00000006908	PNPT1	98	57.762	Taeniopygia_guttata
FBgn0039846	PNPase	93	56.084	ENSTRUG00000005495	PNPT1	96	55.064	Takifugu_rubripes
FBgn0039846	PNPase	93	55.710	ENSTNIG00000007460	PNPT1	96	55.710	Tetraodon_nigroviridis
FBgn0039846	PNPase	86	44.571	ENSTBEG00000010788	PNPT1	84	44.571	Tupaia_belangeri
FBgn0039846	PNPase	92	58.205	ENSTTRG00000000029	PNPT1	97	58.205	Tursiops_truncatus
FBgn0039846	PNPase	82	62.022	ENSUAMG00000017133	PNPT1	96	62.022	Ursus_americanus
FBgn0039846	PNPase	93	58.263	ENSUMAG00000018844	PNPT1	90	58.322	Ursus_maritimus
FBgn0039846	PNPase	93	52.712	ENSVPAG00000007097	PNPT1	92	52.755	Vicugna_pacos
FBgn0039846	PNPase	95	57.007	ENSVVUG00000010034	PNPT1	93	57.007	Vulpes_vulpes
FBgn0039846	PNPase	93	57.902	ENSXETG00000006075	pnpt1	90	57.902	Xenopus_tropicalis
FBgn0039846	PNPase	93	56.643	ENSXCOG00000013381	PNPT1	97	56.215	Xiphophorus_couchianus
FBgn0039846	PNPase	93	56.643	ENSXMAG00000016907	PNPT1	97	56.643	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	21873635.	IBA	Function
GO:0000957	mitochondrial RNA catabolic process	21873635.	IBA	Process
GO:0000958	mitochondrial mRNA catabolic process	21873635.	IBA	Process
GO:0000963	mitochondrial RNA processing	21873635.	IBA	Process
GO:0000965	mitochondrial RNA 3'-end processing	21873635.	IBA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0004654	polyribonucleotide nucleotidyltransferase activity	21873635.	IBA	Function
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0006401	RNA catabolic process	21873635.	IBA	Process
GO:0044528	regulation of mitochondrial mRNA stability	26152302.	IMP	Process