EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0039861 (Gene tree)
Gene ID: 43728
Gene Symbol: pasha
Alias: -
Full Name: partner of drosha
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 4241 bases
Position: chr3R:31617977-31622217
Accession: FBgn0039861
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0307960	dsrm	PF00035.26	1.3e-12	1	1
FBpp0085181	dsrm	PF00035.26	2e-12	1	1
FBpp0307961	dsrm	PF00035.26	2e-12	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0085820	-	2847	-	FBpp0085181	642 (aa)	-	Q9V9V7
FBtr0337032	-	2579	-	FBpp0307961	642 (aa)	-	H5V8G4
FBtr0337031	-	2123	-	FBpp0307960	580 (aa)	-	A0A0B4KI70

Gene Model

Click here to download FBgn0039861's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0039861's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0039861	pasha	85	40.600	ENSG00000128191	DGCR8	72	37.415	Homo_sapiens
FBgn0039861	pasha	85	40.800	ENSAMEG00000011732	DGCR8	78	36.875	Ailuropoda_melanoleuca
FBgn0039861	pasha	87	40.219	ENSACIG00000020103	dgcr8	73	38.358	Amphilophus_citrinellus
FBgn0039861	pasha	92	39.033	ENSAOCG00000009444	dgcr8	73	38.526	Amphiprion_ocellaris
FBgn0039861	pasha	92	39.033	ENSAPEG00000004916	dgcr8	73	38.526	Amphiprion_percula
FBgn0039861	pasha	89	40.391	ENSATEG00000015435	dgcr8	73	39.333	Anabas_testudineus
FBgn0039861	pasha	87	38.330	ENSAPLG00000004281	DGCR8	72	38.605	Anas_platyrhynchos
FBgn0039861	pasha	90	37.624	ENSACAG00000008031	DGCR8	74	37.789	Anolis_carolinensis
FBgn0039861	pasha	85	40.600	ENSANAG00000013710	DGCR8	72	37.415	Aotus_nancymaae
FBgn0039861	pasha	87	39.964	ENSACLG00000019757	dgcr8	77	38.127	Astatotilapia_calliptera
FBgn0039861	pasha	86	37.542	ENSAMXG00000017429	dgcr8	72	37.056	Astyanax_mexicanus
FBgn0039861	pasha	91	36.765	ENSBTAG00000019869	DGCR8	74	37.521	Bos_taurus
FBgn0039861	pasha	85	40.600	ENSCJAG00000010780	DGCR8	72	37.415	Callithrix_jacchus
FBgn0039861	pasha	85	40.800	ENSCAFG00000014196	DGCR8	78	36.875	Canis_familiaris
FBgn0039861	pasha	85	40.800	ENSCAFG00020007769	DGCR8	78	36.875	Canis_lupus_dingo
FBgn0039861	pasha	95	36.661	ENSCHIG00000019845	DGCR8	78	37.031	Capra_hircus
FBgn0039861	pasha	85	41.683	ENSTSYG00000027809	DGCR8	72	38.330	Carlito_syrichta
FBgn0039861	pasha	64	38.564	ENSCAPG00000007081	DGCR8	51	38.564	Cavia_aperea
FBgn0039861	pasha	85	40.800	ENSCPOG00000002952	DGCR8	74	37.585	Cavia_porcellus
FBgn0039861	pasha	85	41.000	ENSCCAG00000036620	DGCR8	72	37.755	Cebus_capucinus
FBgn0039861	pasha	85	40.600	ENSCATG00000030676	DGCR8	72	37.415	Cercocebus_atys
FBgn0039861	pasha	85	40.600	ENSCLAG00000013910	DGCR8	78	36.562	Chinchilla_lanigera
FBgn0039861	pasha	85	40.600	ENSCSAG00000011993	DGCR8	72	37.415	Chlorocebus_sabaeus
FBgn0039861	pasha	93	38.681	ENSCPBG00000016973	DGCR8	72	38.225	Chrysemys_picta_bellii
FBgn0039861	pasha	85	40.600	ENSCANG00000029485	DGCR8	72	37.415	Colobus_angolensis_palliatus
FBgn0039861	pasha	91	38.033	ENSCGRG00001000935	-	75	38.033	Cricetulus_griseus_chok1gshd
FBgn0039861	pasha	91	38.033	ENSCGRG00000005319	-	75	38.033	Cricetulus_griseus_crigri
FBgn0039861	pasha	89	40.073	ENSCSEG00000011546	dgcr8	76	37.763	Cynoglossus_semilaevis
FBgn0039861	pasha	86	38.291	ENSCVAG00000008664	dgcr8	60	42.149	Cyprinodon_variegatus
FBgn0039861	pasha	88	38.727	ENSDARG00000035564	dgcr8	68	38.727	Danio_rerio
FBgn0039861	pasha	91	36.928	ENSDNOG00000010345	DGCR8	75	37.520	Dasypus_novemcinctus
FBgn0039861	pasha	85	40.600	ENSDORG00000028551	-	72	37.585	Dipodomys_ordii
FBgn0039861	pasha	91	37.068	ENSEASG00005010521	DGCR8	75	37.068	Equus_asinus_asinus
FBgn0039861	pasha	91	36.946	ENSECAG00000009295	DGCR8	75	37.063	Equus_caballus
FBgn0039861	pasha	72	53.846	ENSEEUG00000011818	DGCR8	63	53.846	Erinaceus_europaeus
FBgn0039861	pasha	89	39.377	ENSELUG00000006969	dgcr8	59	42.171	Esox_lucius
FBgn0039861	pasha	85	40.800	ENSFCAG00000006801	DGCR8	79	36.792	Felis_catus
FBgn0039861	pasha	87	37.990	ENSFALG00000008149	DGCR8	72	38.265	Ficedula_albicollis
FBgn0039861	pasha	85	40.964	ENSFDAG00000008236	DGCR8	72	37.713	Fukomys_damarensis
FBgn0039861	pasha	92	39.192	ENSFHEG00000007016	dgcr8	72	39.286	Fundulus_heteroclitus
FBgn0039861	pasha	90	38.789	ENSGMOG00000007715	dgcr8	68	40.977	Gadus_morhua
FBgn0039861	pasha	87	38.330	ENSGALG00000033126	DGCR8	72	38.605	Gallus_gallus
FBgn0039861	pasha	92	38.715	ENSGAFG00000006516	dgcr8	60	41.212	Gambusia_affinis
FBgn0039861	pasha	89	39.560	ENSGACG00000012975	dgcr8	73	39.071	Gasterosteus_aculeatus
FBgn0039861	pasha	93	38.366	ENSGAGG00000024260	DGCR8	72	38.160	Gopherus_agassizii
FBgn0039861	pasha	85	40.600	ENSGGOG00000000780	DGCR8	72	37.415	Gorilla_gorilla
FBgn0039861	pasha	87	39.964	ENSHBUG00000008555	dgcr8	73	38.127	Haplochromis_burtoni
FBgn0039861	pasha	85	40.600	ENSHGLG00000016999	DGCR8	72	37.415	Heterocephalus_glaber_female
FBgn0039861	pasha	85	40.600	ENSHGLG00100014468	DGCR8	72	37.415	Heterocephalus_glaber_male
FBgn0039861	pasha	92	38.527	ENSHCOG00000003315	dgcr8	73	38.079	Hippocampus_comes
FBgn0039861	pasha	90	39.928	ENSIPUG00000016755	DGCR8	78	37.380	Ictalurus_punctatus
FBgn0039861	pasha	85	40.845	ENSSTOG00000023936	DGCR8	72	36.986	Ictidomys_tridecemlineatus
FBgn0039861	pasha	85	41.483	ENSJJAG00000014171	-	72	38.160	Jaculus_jaculus
FBgn0039861	pasha	92	38.351	ENSKMAG00000009087	dgcr8	61	41.700	Kryptolebias_marmoratus
FBgn0039861	pasha	92	37.969	ENSLBEG00000025152	dgcr8	78	37.461	Labrus_bergylta
FBgn0039861	pasha	88	38.787	ENSLACG00000017462	DGCR8	75	37.073	Latimeria_chalumnae
FBgn0039861	pasha	89	40.177	ENSLOCG00000002491	dgcr8	72	39.333	Lepisosteus_oculatus
FBgn0039861	pasha	85	41.000	ENSLAFG00000013724	DGCR8	72	37.755	Loxodonta_africana
FBgn0039861	pasha	85	41.317	ENSMFAG00000033708	DGCR8	72	37.415	Macaca_fascicularis
FBgn0039861	pasha	85	41.317	ENSMMUG00000020098	DGCR8	72	37.415	Macaca_mulatta
FBgn0039861	pasha	85	40.600	ENSMNEG00000009733	DGCR8	73	36.993	Macaca_nemestrina
FBgn0039861	pasha	85	40.600	ENSMLEG00000030324	DGCR8	72	37.415	Mandrillus_leucophaeus
FBgn0039861	pasha	89	40.108	ENSMAMG00000020856	dgcr8	69	41.035	Mastacembelus_armatus
FBgn0039861	pasha	87	39.964	ENSMZEG00005018646	dgcr8	73	38.127	Maylandia_zebra
FBgn0039861	pasha	93	36.945	ENSMGAG00000001534	DGCR8	72	36.797	Meleagris_gallopavo
FBgn0039861	pasha	91	38.033	ENSMAUG00000000517	-	75	38.033	Mesocricetus_auratus
FBgn0039861	pasha	85	41.046	ENSMICG00000030145	DGCR8	72	37.158	Microcebus_murinus
FBgn0039861	pasha	91	37.869	ENSMOCG00000014743	-	75	38.298	Microtus_ochrogaster
FBgn0039861	pasha	92	39.100	ENSMMOG00000014823	dgcr8	73	38.758	Mola_mola
FBgn0039861	pasha	89	37.752	ENSMODG00000010334	DGCR8	75	37.789	Monodelphis_domestica
FBgn0039861	pasha	87	40.290	ENSMALG00000015163	dgcr8	78	37.656	Monopterus_albus
FBgn0039861	pasha	91	37.869	MGP_CAROLIEiJ_G0020542	-	75	38.462	Mus_caroli
FBgn0039861	pasha	91	37.869	ENSMUSG00000022718	Dgcr8	75	38.462	Mus_musculus
FBgn0039861	pasha	91	37.869	MGP_PahariEiJ_G0016247	-	75	38.462	Mus_pahari
FBgn0039861	pasha	91	35.574	MGP_SPRETEiJ_G0021437	-	74	36.170	Mus_spretus
FBgn0039861	pasha	95	36.719	ENSMPUG00000004005	DGCR8	80	36.719	Mustela_putorius_furo
FBgn0039861	pasha	85	39.679	ENSMLUG00000017533	DGCR8	72	36.627	Myotis_lucifugus
FBgn0039861	pasha	87	37.265	ENSNGAG00000003283	-	72	37.436	Nannospalax_galili
FBgn0039861	pasha	92	38.208	ENSNBRG00000002412	dgcr8	77	37.915	Neolamprologus_brichardi
FBgn0039861	pasha	85	40.600	ENSNLEG00000005643	DGCR8	72	37.415	Nomascus_leucogenys
FBgn0039861	pasha	92	37.251	ENSMEUG00000001041	DGCR8	74	36.807	Notamacropus_eugenii
FBgn0039861	pasha	87	36.942	ENSOPRG00000008457	DGCR8	59	41.788	Ochotona_princeps
FBgn0039861	pasha	85	40.600	ENSODEG00000016402	DGCR8	75	36.721	Octodon_degus
FBgn0039861	pasha	87	40.223	ENSONIG00000011072	dgcr8	73	38.358	Oreochromis_niloticus
FBgn0039861	pasha	87	37.372	ENSOCUG00000003612	DGCR8	60	41.942	Oryctolagus_cuniculus
FBgn0039861	pasha	87	39.366	ENSORLG00000015160	dgcr8	74	38.280	Oryzias_latipes
FBgn0039861	pasha	90	38.517	ENSORLG00020022168	dgcr8	74	38.449	Oryzias_latipes_hni
FBgn0039861	pasha	87	39.552	ENSORLG00015012766	dgcr8	74	38.449	Oryzias_latipes_hsok
FBgn0039861	pasha	87	39.552	ENSOMEG00000019137	dgcr8	67	39.552	Oryzias_melastigma
FBgn0039861	pasha	85	41.046	ENSOGAG00000004851	DGCR8	72	37.778	Otolemur_garnettii
FBgn0039861	pasha	95	36.250	ENSOARG00000018063	DGCR8	77	36.909	Ovis_aries
FBgn0039861	pasha	85	40.600	ENSPPAG00000039507	DGCR8	72	37.415	Pan_paniscus
FBgn0039861	pasha	85	40.800	ENSPPRG00000018958	DGCR8	77	37.363	Panthera_pardus
FBgn0039861	pasha	85	41.517	ENSPTIG00000010980	DGCR8	77	37.363	Panthera_tigris_altaica
FBgn0039861	pasha	85	40.600	ENSPTRG00000014073	DGCR8	72	37.415	Pan_troglodytes
FBgn0039861	pasha	85	40.600	ENSPANG00000019987	DGCR8	72	37.415	Papio_anubis
FBgn0039861	pasha	89	39.783	ENSPKIG00000010338	dgcr8	75	38.769	Paramormyrops_kingsleyae
FBgn0039861	pasha	93	37.279	ENSPSIG00000002300	-	72	37.394	Pelodiscus_sinensis
FBgn0039861	pasha	87	39.560	ENSPMGG00000021200	dgcr8	68	40.110	Periophthalmus_magnuspinnatus
FBgn0039861	pasha	91	37.869	ENSPEMG00000018266	-	75	37.869	Peromyscus_maniculatus_bairdii
FBgn0039861	pasha	89	37.710	ENSPCIG00000027728	DGCR8	75	37.748	Phascolarctos_cinereus
FBgn0039861	pasha	92	38.581	ENSPFOG00000010796	dgcr8	61	41.129	Poecilia_formosa
FBgn0039861	pasha	92	38.581	ENSPLAG00000002812	dgcr8	60	41.129	Poecilia_latipinna
FBgn0039861	pasha	92	38.408	ENSPMEG00000024459	dgcr8	60	40.927	Poecilia_mexicana
FBgn0039861	pasha	93	38.220	ENSPREG00000018877	dgcr8	60	40.900	Poecilia_reticulata
FBgn0039861	pasha	85	40.600	ENSPPYG00000011591	DGCR8	72	37.415	Pongo_abelii
FBgn0039861	pasha	84	37.913	ENSPCAG00000015976	DGCR8	70	37.193	Procavia_capensis
FBgn0039861	pasha	85	41.247	ENSPCOG00000025377	DGCR8	72	37.949	Propithecus_coquereli
FBgn0039861	pasha	95	32.756	ENSPVAG00000015694	DGCR8	77	32.756	Pteropus_vampyrus
FBgn0039861	pasha	87	39.964	ENSPNYG00000004486	dgcr8	73	38.127	Pundamilia_nyererei
FBgn0039861	pasha	93	37.694	ENSPNAG00000016504	dgcr8	73	37.143	Pygocentrus_nattereri
FBgn0039861	pasha	91	37.869	ENSRNOG00000001886	Dgcr8	75	37.869	Rattus_norvegicus
FBgn0039861	pasha	85	40.600	ENSRBIG00000015201	DGCR8	72	37.415	Rhinopithecus_bieti
FBgn0039861	pasha	85	40.600	ENSRROG00000029948	DGCR8	72	37.415	Rhinopithecus_roxellana
FBgn0039861	pasha	85	41.317	ENSSBOG00000022975	DGCR8	72	37.415	Saimiri_boliviensis_boliviensis
FBgn0039861	pasha	92	38.698	ENSSHAG00000002274	DGCR8	75	37.914	Sarcophilus_harrisii
FBgn0039861	pasha	89	39.680	ENSSFOG00015017499	dgcr8	73	38.270	Scleropages_formosus
FBgn0039861	pasha	92	38.202	ENSSMAG00000019677	dgcr8	78	37.834	Scophthalmus_maximus
FBgn0039861	pasha	89	40.285	ENSSDUG00000002478	dgcr8	78	38.558	Seriola_dumerili
FBgn0039861	pasha	89	40.285	ENSSLDG00000015762	dgcr8	78	38.558	Seriola_lalandi_dorsalis
FBgn0039861	pasha	91	37.336	ENSSARG00000009292	DGCR8	75	37.336	Sorex_araneus
FBgn0039861	pasha	86	39.205	ENSSPUG00000014967	DGCR8	72	37.627	Sphenodon_punctatus
FBgn0039861	pasha	92	38.927	ENSSPAG00000009666	dgcr8	73	38.758	Stegastes_partitus
FBgn0039861	pasha	85	41.600	ENSSSCG00000010135	DGCR8	72	38.265	Sus_scrofa
FBgn0039861	pasha	89	38.146	ENSTRUG00000013594	dgcr8	73	37.416	Takifugu_rubripes
FBgn0039861	pasha	89	38.475	ENSTNIG00000016762	dgcr8	73	37.730	Tetraodon_nigroviridis
FBgn0039861	pasha	65	41.935	ENSTBEG00000007196	DGCR8	57	41.935	Tupaia_belangeri
FBgn0039861	pasha	85	35.400	ENSTTRG00000008121	DGCR8	67	35.072	Tursiops_truncatus
FBgn0039861	pasha	85	40.800	ENSUAMG00000010847	DGCR8	78	36.875	Ursus_americanus
FBgn0039861	pasha	85	40.800	ENSUMAG00000007398	DGCR8	78	36.875	Ursus_maritimus
FBgn0039861	pasha	85	41.517	ENSVVUG00000025413	DGCR8	78	36.875	Vulpes_vulpes
FBgn0039861	pasha	87	39.734	ENSXETG00000006320	dgcr8	65	39.734	Xenopus_tropicalis
FBgn0039861	pasha	92	38.062	ENSXCOG00000015141	dgcr8	60	40.524	Xiphophorus_couchianus
FBgn0039861	pasha	92	38.062	ENSXMAG00000002426	dgcr8	60	40.524	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003725	double-stranded RNA binding	21873635.	IBA	Function
GO:0003725	double-stranded RNA binding	10908586.	ISS	Function
GO:0004525	ribonuclease III activity	21873635.	IBA	Function
GO:0005515	protein binding	19632183.	IPI	Function
GO:0005634	nucleus	19013069.	IDA	Component
GO:0007294	germarium-derived oocyte fate determination	22445511.	IMP	Process
GO:0007446	imaginal disc growth	19047376.	IMP	Process
GO:0016319	mushroom body development	24474768.	IMP	Process
GO:0020037	heme binding	21873635.	IBA	Function
GO:0030727	germarium-derived female germ-line cyst formation	22445511.	IMP	Process
GO:0031053	primary miRNA processing	21873635.	IBA	Process
GO:0031053	primary miRNA processing	15531879.15589161.19047376.21947201.	IMP	Process
GO:0035195	gene silencing by miRNA	19047376.	IMP	Process
GO:0042802	identical protein binding	-	IEA	Function
GO:0070877	microprocessor complex	21873635.	IBA	Component
GO:0070878	primary miRNA binding	21873635.	IBA	Function