EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0039977 (Gene tree)
Gene ID: 7354399
Gene Symbol: CG17454
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 1667 bases
Position: chr3L:23715023-23716689
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0306040	SMN	PF06003.12	2.2e-05	1	1
FBpp0289146	SMN	PF06003.12	2.2e-05	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0299868	-	880	-	FBpp0289146	243 (aa)	-	Q95RI7
FBtr0333911	-	1163	-	FBpp0306040	230 (aa)	-	G7H806

Gene Model

Click here to download FBgn0039977's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0039977's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0039977	CG17454	98	42.972	ENSG00000119953	SMNDC1	95	41.767	Homo_sapiens
FBgn0039977	CG17454	98	42.169	ENSAPOG00000021772	smndc1	95	40.562	Acanthochromis_polyacanthus
FBgn0039977	CG17454	98	42.972	ENSAMEG00000005251	SMNDC1	95	41.767	Ailuropoda_melanoleuca
FBgn0039977	CG17454	98	43.373	ENSACIG00000004819	smndc1	95	41.767	Amphilophus_citrinellus
FBgn0039977	CG17454	98	42.169	ENSAOCG00000017869	smndc1	95	40.562	Amphiprion_ocellaris
FBgn0039977	CG17454	98	42.169	ENSAPEG00000007752	smndc1	95	40.562	Amphiprion_percula
FBgn0039977	CG17454	98	42.169	ENSATEG00000006830	smndc1	95	40.964	Anabas_testudineus
FBgn0039977	CG17454	88	40.376	ENSAPLG00000004322	SMNDC1	96	40.845	Anas_platyrhynchos
FBgn0039977	CG17454	98	42.169	ENSACAG00000005983	SMNDC1	95	41.107	Anolis_carolinensis
FBgn0039977	CG17454	98	42.972	ENSANAG00000032875	SMNDC1	95	41.767	Aotus_nancymaae
FBgn0039977	CG17454	98	43.775	ENSACLG00000016360	smndc1	95	42.169	Astatotilapia_calliptera
FBgn0039977	CG17454	98	42.742	ENSAMXG00000020310	smndc1	95	41.129	Astyanax_mexicanus
FBgn0039977	CG17454	98	43.373	ENSBTAG00000000551	SMNDC1	95	42.169	Bos_taurus
FBgn0039977	CG17454	98	42.972	ENSCJAG00000018624	SMNDC1	95	41.767	Callithrix_jacchus
FBgn0039977	CG17454	98	42.972	ENSCAFG00000010720	SMNDC1	95	41.767	Canis_familiaris
FBgn0039977	CG17454	98	42.972	ENSCAFG00020011913	SMNDC1	95	41.767	Canis_lupus_dingo
FBgn0039977	CG17454	98	43.373	ENSCHIG00000010604	SMNDC1	95	42.169	Capra_hircus
FBgn0039977	CG17454	98	42.972	ENSTSYG00000026454	SMNDC1	95	41.767	Carlito_syrichta
FBgn0039977	CG17454	86	41.364	ENSCAPG00000009132	SMNDC1	98	40.000	Cavia_aperea
FBgn0039977	CG17454	98	42.972	ENSCPOG00000031666	SMNDC1	95	41.767	Cavia_porcellus
FBgn0039977	CG17454	98	42.972	ENSCCAG00000021793	SMNDC1	95	41.767	Cebus_capucinus
FBgn0039977	CG17454	96	43.210	ENSCATG00000035910	SMNDC1	92	41.975	Cercocebus_atys
FBgn0039977	CG17454	98	42.972	ENSCLAG00000002838	SMNDC1	95	41.767	Chinchilla_lanigera
FBgn0039977	CG17454	98	42.972	ENSCSAG00000005169	SMNDC1	95	41.767	Chlorocebus_sabaeus
FBgn0039977	CG17454	82	40.385	ENSCHOG00000002936	SMNDC1	90	40.102	Choloepus_hoffmanni
FBgn0039977	CG17454	98	43.373	ENSCPBG00000012837	SMNDC1	95	43.775	Chrysemys_picta_bellii
FBgn0039977	CG17454	96	40.329	ENSCANG00000034620	-	92	39.506	Colobus_angolensis_palliatus
FBgn0039977	CG17454	91	38.839	ENSCANG00000036994	-	91	38.393	Colobus_angolensis_palliatus
FBgn0039977	CG17454	98	42.972	ENSCANG00000031720	-	95	41.767	Colobus_angolensis_palliatus
FBgn0039977	CG17454	98	42.972	ENSCGRG00001012973	Smndc1	95	41.767	Cricetulus_griseus_chok1gshd
FBgn0039977	CG17454	98	42.972	ENSCGRG00000012396	Smndc1	95	41.767	Cricetulus_griseus_crigri
FBgn0039977	CG17454	98	44.800	ENSCSEG00000015621	smndc1	97	43.200	Cynoglossus_semilaevis
FBgn0039977	CG17454	98	42.972	ENSCVAG00000020432	smndc1	95	41.767	Cyprinodon_variegatus
FBgn0039977	CG17454	97	43.443	ENSDARG00000056235	smndc1	93	41.803	Danio_rerio
FBgn0039977	CG17454	98	42.570	ENSDNOG00000016387	SMNDC1	78	41.767	Dasypus_novemcinctus
FBgn0039977	CG17454	98	42.972	ENSDORG00000023715	Smndc1	95	41.767	Dipodomys_ordii
FBgn0039977	CG17454	98	41.406	ENSEBUG00000010929	smndc1	97	41.016	Eptatretus_burgeri
FBgn0039977	CG17454	98	42.972	ENSEASG00005014930	SMNDC1	95	41.767	Equus_asinus_asinus
FBgn0039977	CG17454	98	42.972	ENSECAG00000029973	SMNDC1	95	41.767	Equus_caballus
FBgn0039977	CG17454	98	43.348	ENSELUG00000000227	smndc1	93	42.387	Esox_lucius
FBgn0039977	CG17454	98	42.972	ENSFCAG00000027353	SMNDC1	95	41.767	Felis_catus
FBgn0039977	CG17454	98	43.373	ENSFALG00000002306	SMNDC1	95	43.373	Ficedula_albicollis
FBgn0039977	CG17454	98	42.972	ENSFDAG00000006468	SMNDC1	95	41.767	Fukomys_damarensis
FBgn0039977	CG17454	98	43.373	ENSFHEG00000020150	smndc1	95	41.767	Fundulus_heteroclitus
FBgn0039977	CG17454	98	42.629	ENSGMOG00000016585	smndc1	97	42.629	Gadus_morhua
FBgn0039977	CG17454	98	43.373	ENSGALG00000008561	SMNDC1	95	43.373	Gallus_gallus
FBgn0039977	CG17454	98	42.169	ENSGAFG00000011582	smndc1	95	40.562	Gambusia_affinis
FBgn0039977	CG17454	98	43.478	ENSGACG00000009468	smndc1	97	42.688	Gasterosteus_aculeatus
FBgn0039977	CG17454	98	43.373	ENSGAGG00000024547	SMNDC1	95	43.775	Gopherus_agassizii
FBgn0039977	CG17454	98	42.972	ENSGGOG00000010071	SMNDC1	95	41.767	Gorilla_gorilla
FBgn0039977	CG17454	98	43.775	ENSHBUG00000017596	smndc1	95	42.169	Haplochromis_burtoni
FBgn0039977	CG17454	98	42.972	ENSHGLG00000013390	-	95	41.767	Heterocephalus_glaber_female
FBgn0039977	CG17454	98	35.628	ENSHGLG00000001157	-	94	32.794	Heterocephalus_glaber_female
FBgn0039977	CG17454	98	37.903	ENSHGLG00100004278	-	95	36.290	Heterocephalus_glaber_male
FBgn0039977	CG17454	98	42.972	ENSHGLG00100004814	-	95	41.767	Heterocephalus_glaber_male
FBgn0039977	CG17454	98	40.800	ENSHCOG00000000783	smndc1	95	39.200	Hippocampus_comes
FBgn0039977	CG17454	98	41.532	ENSIPUG00000004217	smndc1	95	39.919	Ictalurus_punctatus
FBgn0039977	CG17454	98	42.972	ENSSTOG00000006088	SMNDC1	95	41.767	Ictidomys_tridecemlineatus
FBgn0039977	CG17454	98	43.373	ENSJJAG00000019974	Smndc1	95	42.169	Jaculus_jaculus
FBgn0039977	CG17454	98	43.373	ENSKMAG00000020134	smndc1	95	42.169	Kryptolebias_marmoratus
FBgn0039977	CG17454	97	41.803	ENSLBEG00000004598	smndc1	93	40.164	Labrus_bergylta
FBgn0039977	CG17454	98	42.972	ENSLACG00000007784	SMNDC1	95	41.767	Latimeria_chalumnae
FBgn0039977	CG17454	98	44.048	ENSLOCG00000012355	smndc1	97	43.254	Lepisosteus_oculatus
FBgn0039977	CG17454	98	43.373	ENSLAFG00000014353	SMNDC1	95	42.169	Loxodonta_africana
FBgn0039977	CG17454	98	42.972	ENSMFAG00000002433	-	95	41.767	Macaca_fascicularis
FBgn0039977	CG17454	98	34.568	ENSMFAG00000038381	-	94	33.333	Macaca_fascicularis
FBgn0039977	CG17454	98	34.568	ENSMMUG00000045875	-	94	33.333	Macaca_mulatta
FBgn0039977	CG17454	98	42.972	ENSMMUG00000007775	SMNDC1	95	41.767	Macaca_mulatta
FBgn0039977	CG17454	96	38.017	ENSMNEG00000033853	-	92	39.419	Macaca_nemestrina
FBgn0039977	CG17454	98	42.972	ENSMNEG00000042963	-	95	41.767	Macaca_nemestrina
FBgn0039977	CG17454	98	40.079	ENSMLEG00000040236	SMNDC1	95	38.095	Mandrillus_leucophaeus
FBgn0039977	CG17454	91	40.948	ENSMAMG00000018233	smndc1	85	39.224	Mastacembelus_armatus
FBgn0039977	CG17454	98	43.775	ENSMZEG00005027510	smndc1	95	42.169	Maylandia_zebra
FBgn0039977	CG17454	89	40.000	ENSMGAG00000010777	SMNDC1	81	40.465	Meleagris_gallopavo
FBgn0039977	CG17454	98	42.972	ENSMAUG00000012243	-	95	41.767	Mesocricetus_auratus
FBgn0039977	CG17454	98	36.250	ENSMAUG00000005459	-	89	36.250	Mesocricetus_auratus
FBgn0039977	CG17454	98	36.145	ENSMICG00000031640	-	95	34.818	Microcebus_murinus
FBgn0039977	CG17454	98	43.373	ENSMICG00000027336	-	95	42.169	Microcebus_murinus
FBgn0039977	CG17454	98	42.972	ENSMOCG00000002458	Smndc1	95	41.767	Microtus_ochrogaster
FBgn0039977	CG17454	98	40.562	ENSMMOG00000008856	smndc1	95	38.956	Mola_mola
FBgn0039977	CG17454	98	42.972	ENSMODG00000010542	SMNDC1	95	41.767	Monodelphis_domestica
FBgn0039977	CG17454	98	43.083	ENSMALG00000017598	smndc1	97	41.502	Monopterus_albus
FBgn0039977	CG17454	98	42.972	MGP_CAROLIEiJ_G0023072	Smndc1	95	41.767	Mus_caroli
FBgn0039977	CG17454	98	42.972	ENSMUSG00000025024	Smndc1	95	41.767	Mus_musculus
FBgn0039977	CG17454	98	42.972	MGP_PahariEiJ_G0014560	Smndc1	95	41.767	Mus_pahari
FBgn0039977	CG17454	98	42.972	MGP_SPRETEiJ_G0023993	Smndc1	95	41.767	Mus_spretus
FBgn0039977	CG17454	98	42.972	ENSMPUG00000002089	SMNDC1	95	41.767	Mustela_putorius_furo
FBgn0039977	CG17454	98	43.373	ENSMLUG00000016007	SMNDC1	95	42.570	Myotis_lucifugus
FBgn0039977	CG17454	98	42.629	ENSNGAG00000006833	Smndc1	95	41.434	Nannospalax_galili
FBgn0039977	CG17454	98	43.775	ENSNBRG00000017089	smndc1	95	42.169	Neolamprologus_brichardi
FBgn0039977	CG17454	98	42.972	ENSNLEG00000015471	SMNDC1	95	41.767	Nomascus_leucogenys
FBgn0039977	CG17454	64	38.411	ENSMEUG00000010120	-	78	36.424	Notamacropus_eugenii
FBgn0039977	CG17454	98	42.972	ENSOPRG00000015348	SMNDC1	95	41.767	Ochotona_princeps
FBgn0039977	CG17454	98	32.500	ENSODEG00000007594	-	94	30.894	Octodon_degus
FBgn0039977	CG17454	98	43.775	ENSONIG00000000434	smndc1	95	42.169	Oreochromis_niloticus
FBgn0039977	CG17454	98	43.373	ENSOANG00000001598	SMNDC1	95	41.107	Ornithorhynchus_anatinus
FBgn0039977	CG17454	98	42.972	ENSOCUG00000008145	-	95	41.767	Oryctolagus_cuniculus
FBgn0039977	CG17454	99	36.179	ENSOCUG00000012274	-	95	33.333	Oryctolagus_cuniculus
FBgn0039977	CG17454	98	40.161	ENSORLG00000005934	smndc1	90	38.956	Oryzias_latipes
FBgn0039977	CG17454	98	40.161	ENSORLG00020008796	smndc1	90	38.956	Oryzias_latipes_hni
FBgn0039977	CG17454	98	40.161	ENSORLG00015013666	smndc1	95	38.956	Oryzias_latipes_hsok
FBgn0039977	CG17454	98	41.532	ENSOMEG00000007590	smndc1	95	39.919	Oryzias_melastigma
FBgn0039977	CG17454	98	43.373	ENSOGAG00000000571	SMNDC1	95	42.169	Otolemur_garnettii
FBgn0039977	CG17454	98	43.373	ENSOARG00000009500	SMNDC1	95	42.169	Ovis_aries
FBgn0039977	CG17454	98	42.972	ENSPPAG00000027815	SMNDC1	95	41.767	Pan_paniscus
FBgn0039977	CG17454	98	42.972	ENSPPRG00000013749	SMNDC1	95	41.767	Panthera_pardus
FBgn0039977	CG17454	98	42.972	ENSPTIG00000011451	SMNDC1	95	41.767	Panthera_tigris_altaica
FBgn0039977	CG17454	98	42.972	ENSPTRG00000002937	SMNDC1	95	41.767	Pan_troglodytes
FBgn0039977	CG17454	98	42.972	ENSPANG00000020805	-	95	41.767	Papio_anubis
FBgn0039977	CG17454	98	40.329	ENSPANG00000031346	-	95	39.095	Papio_anubis
FBgn0039977	CG17454	98	43.254	ENSPKIG00000017164	smndc1	97	41.667	Paramormyrops_kingsleyae
FBgn0039977	CG17454	98	43.373	ENSPSIG00000012257	SMNDC1	95	43.775	Pelodiscus_sinensis
FBgn0039977	CG17454	98	42.105	ENSPMGG00000015651	smndc1	95	40.891	Periophthalmus_magnuspinnatus
FBgn0039977	CG17454	98	42.972	ENSPEMG00000022058	Smndc1	95	41.767	Peromyscus_maniculatus_bairdii
FBgn0039977	CG17454	98	44.314	ENSPMAG00000007705	smndc1	97	43.137	Petromyzon_marinus
FBgn0039977	CG17454	98	42.972	ENSPCIG00000018419	SMNDC1	95	41.767	Phascolarctos_cinereus
FBgn0039977	CG17454	97	34.836	ENSPCIG00000009693	-	95	33.471	Phascolarctos_cinereus
FBgn0039977	CG17454	98	41.767	ENSPFOG00000017113	smndc1	95	41.365	Poecilia_formosa
FBgn0039977	CG17454	98	42.570	ENSPLAG00000010372	smndc1	95	41.767	Poecilia_latipinna
FBgn0039977	CG17454	98	42.169	ENSPMEG00000012288	smndc1	95	40.562	Poecilia_mexicana
FBgn0039977	CG17454	98	41.365	ENSPREG00000012279	smndc1	95	40.964	Poecilia_reticulata
FBgn0039977	CG17454	98	42.972	ENSPPYG00000002643	SMNDC1	95	41.767	Pongo_abelii
FBgn0039977	CG17454	82	40.385	ENSPCAG00000016183	SMNDC1	90	40.102	Procavia_capensis
FBgn0039977	CG17454	98	43.373	ENSPCOG00000024343	SMNDC1	95	42.169	Propithecus_coquereli
FBgn0039977	CG17454	76	56.098	ENSPVAG00000004368	SMNDC1	69	52.439	Pteropus_vampyrus
FBgn0039977	CG17454	88	40.376	ENSPNYG00000024093	smndc1	83	38.498	Pundamilia_nyererei
FBgn0039977	CG17454	98	41.935	ENSPNAG00000025285	smndc1	95	40.323	Pygocentrus_nattereri
FBgn0039977	CG17454	98	42.972	ENSRNOG00000014833	Smndc1	95	41.767	Rattus_norvegicus
FBgn0039977	CG17454	98	43.145	ENSRBIG00000000224	-	95	42.339	Rhinopithecus_bieti
FBgn0039977	CG17454	91	40.179	ENSRBIG00000032452	-	92	40.179	Rhinopithecus_bieti
FBgn0039977	CG17454	91	40.179	ENSRROG00000039125	-	92	40.179	Rhinopithecus_roxellana
FBgn0039977	CG17454	98	42.972	ENSRROG00000044992	-	95	41.767	Rhinopithecus_roxellana
FBgn0039977	CG17454	98	42.972	ENSSBOG00000026789	SMNDC1	95	41.767	Saimiri_boliviensis_boliviensis
FBgn0039977	CG17454	98	42.972	ENSSHAG00000015189	SMNDC1	95	41.767	Sarcophilus_harrisii
FBgn0039977	CG17454	98	42.520	ENSSFOG00015008311	smndc1	97	40.945	Scleropages_formosus
FBgn0039977	CG17454	98	42.126	ENSSMAG00000020118	smndc1	97	40.316	Scophthalmus_maximus
FBgn0039977	CG17454	98	43.083	ENSSDUG00000015330	smndc1	97	41.502	Seriola_dumerili
FBgn0039977	CG17454	98	43.083	ENSSLDG00000017325	smndc1	97	41.502	Seriola_lalandi_dorsalis
FBgn0039977	CG17454	98	44.177	ENSSARG00000006063	SMNDC1	95	42.972	Sorex_araneus
FBgn0039977	CG17454	98	43.426	ENSSPUG00000004574	SMNDC1	95	42.231	Sphenodon_punctatus
FBgn0039977	CG17454	97	42.449	ENSSPAG00000000338	smndc1	93	40.816	Stegastes_partitus
FBgn0039977	CG17454	98	42.972	ENSSSCG00000030507	SMNDC1	95	41.767	Sus_scrofa
FBgn0039977	CG17454	98	43.373	ENSTGUG00000010599	SMNDC1	95	43.373	Taeniopygia_guttata
FBgn0039977	CG17454	97	42.449	ENSTRUG00000023281	smndc1	95	40.562	Takifugu_rubripes
FBgn0039977	CG17454	98	42.169	ENSTNIG00000013331	smndc1	95	40.964	Tetraodon_nigroviridis
FBgn0039977	CG17454	98	42.972	ENSTBEG00000014337	SMNDC1	95	41.767	Tupaia_belangeri
FBgn0039977	CG17454	98	42.972	ENSUAMG00000008142	SMNDC1	95	41.767	Ursus_americanus
FBgn0039977	CG17454	98	42.972	ENSUMAG00000023722	SMNDC1	95	41.767	Ursus_maritimus
FBgn0039977	CG17454	88	40.465	ENSVPAG00000003402	SMNDC1	96	39.070	Vicugna_pacos
FBgn0039977	CG17454	98	42.972	ENSVVUG00000007820	SMNDC1	95	41.767	Vulpes_vulpes
FBgn0039977	CG17454	58	40.141	ENSXETG00000015415	SMNDC1	84	40.141	Xenopus_tropicalis
FBgn0039977	CG17454	98	42.915	ENSXCOG00000009159	smndc1	95	41.296	Xiphophorus_couchianus
FBgn0039977	CG17454	98	42.570	ENSXMAG00000012755	smndc1	95	40.964	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0003723	RNA binding	-	ISS	Function
GO:0005634	nucleus	15492211.	IC	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component