EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0040273 (Gene tree)
Gene ID: 53442
Gene Symbol: Spt5
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 4416 bases
Position: chr2R:19437483-19441898
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0085716	KOW	PF00467.29	7.5e-24	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0086531	-	3460	-	FBpp0085716	1078 (aa)	-	Q9V460

Gene Model

Click here to download FBgn0040273's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0040273's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0040273	Spt5	90	54.776	ENSG00000196235	SUPT5H	94	54.244	Homo_sapiens
FBgn0040273	Spt5	90	50.097	ENSAPOG00000012970	supt5h	94	49.612	Acanthochromis_polyacanthus
FBgn0040273	Spt5	90	54.466	ENSAMEG00000008382	SUPT5H	94	53.936	Ailuropoda_melanoleuca
FBgn0040273	Spt5	85	47.910	ENSACIG00000021245	supt5h	87	61.181	Amphilophus_citrinellus
FBgn0040273	Spt5	90	54.110	ENSAOCG00000001136	supt5h	96	52.390	Amphiprion_ocellaris
FBgn0040273	Spt5	90	50.870	ENSAPEG00000021060	supt5h	90	53.326	Amphiprion_percula
FBgn0040273	Spt5	90	54.236	ENSATEG00000002626	supt5h	98	52.976	Anabas_testudineus
FBgn0040273	Spt5	90	54.049	ENSACAG00000000375	SUPT5H	94	53.516	Anolis_carolinensis
FBgn0040273	Spt5	90	54.776	ENSANAG00000033469	SUPT5H	95	53.379	Aotus_nancymaae
FBgn0040273	Spt5	90	51.934	ENSACLG00000011374	supt5h	90	52.996	Astatotilapia_calliptera
FBgn0040273	Spt5	90	54.942	ENSAMXG00000009128	supt5h	94	54.413	Astyanax_mexicanus
FBgn0040273	Spt5	90	54.776	ENSBTAG00000010467	SUPT5H	94	54.049	Bos_taurus
FBgn0040273	Spt5	87	37.534	WBGene00005015	spt-5	91	42.694	Caenorhabditis_elegans
FBgn0040273	Spt5	90	54.563	ENSCJAG00000014182	SUPT5H	94	54.033	Callithrix_jacchus
FBgn0040273	Spt5	90	54.660	ENSCAFG00000005469	SUPT5H	94	54.130	Canis_familiaris
FBgn0040273	Spt5	90	54.447	ENSCAFG00020015732	SUPT5H	96	54.359	Canis_lupus_dingo
FBgn0040273	Spt5	90	54.713	ENSCHIG00000023821	SUPT5H	95	54.183	Capra_hircus
FBgn0040273	Spt5	90	54.297	ENSTSYG00000010636	SUPT5H	94	53.861	Carlito_syrichta
FBgn0040273	Spt5	90	53.204	ENSCAPG00000008285	SUPT5H	96	53.125	Cavia_aperea
FBgn0040273	Spt5	90	54.272	ENSCPOG00000011367	SUPT5H	94	53.741	Cavia_porcellus
FBgn0040273	Spt5	90	54.776	ENSCCAG00000034052	SUPT5H	94	54.244	Cebus_capucinus
FBgn0040273	Spt5	90	54.776	ENSCATG00000035589	SUPT5H	94	54.244	Cercocebus_atys
FBgn0040273	Spt5	90	54.272	ENSCLAG00000013796	SUPT5H	94	53.741	Chinchilla_lanigera
FBgn0040273	Spt5	90	54.660	ENSCSAG00000003826	SUPT5H	94	54.130	Chlorocebus_sabaeus
FBgn0040273	Spt5	90	54.652	ENSCPBG00000018792	SUPT5H	99	55.298	Chrysemys_picta_bellii
FBgn0040273	Spt5	88	46.914	ENSCING00000021624	-	92	48.126	Ciona_intestinalis
FBgn0040273	Spt5	93	49.424	ENSCSAVG00000000030	-	99	50.610	Ciona_savignyi
FBgn0040273	Spt5	90	54.776	ENSCANG00000043752	SUPT5H	95	54.244	Colobus_angolensis_palliatus
FBgn0040273	Spt5	90	54.660	ENSCGRG00001012522	Supt5	94	54.130	Cricetulus_griseus_chok1gshd
FBgn0040273	Spt5	90	54.660	ENSCGRG00000006779	Supt5	93	54.130	Cricetulus_griseus_crigri
FBgn0040273	Spt5	84	51.975	ENSCSEG00000015699	supt5h	93	51.405	Cynoglossus_semilaevis
FBgn0040273	Spt5	73	50.253	ENSCSEG00000017151	-	95	49.747	Cynoglossus_semilaevis
FBgn0040273	Spt5	90	53.158	ENSCVAG00000007501	supt5h	88	53.767	Cyprinodon_variegatus
FBgn0040273	Spt5	90	54.211	ENSDARG00000042724	supt5h	94	53.682	Danio_rerio
FBgn0040273	Spt5	86	54.884	ENSDNOG00000033920	SUPT5H	94	54.133	Dasypus_novemcinctus
FBgn0040273	Spt5	90	53.110	ENSDORG00000016582	Supt5	94	53.754	Dipodomys_ordii
FBgn0040273	Spt5	85	51.905	ENSEBUG00000011892	supt5h	99	50.930	Eptatretus_burgeri
FBgn0040273	Spt5	90	54.386	ENSEASG00005011861	SUPT5H	97	54.733	Equus_asinus_asinus
FBgn0040273	Spt5	90	54.386	ENSECAG00000013309	SUPT5H	99	54.879	Equus_caballus
FBgn0040273	Spt5	80	53.057	ENSEEUG00000012879	SUPT5H	86	52.459	Erinaceus_europaeus
FBgn0040273	Spt5	91	53.475	ENSELUG00000011402	supt5h	94	54.686	Esox_lucius
FBgn0040273	Spt5	90	54.776	ENSFCAG00000010744	SUPT5H	94	54.244	Felis_catus
FBgn0040273	Spt5	90	54.078	ENSFDAG00000015803	SUPT5H	94	53.547	Fukomys_damarensis
FBgn0040273	Spt5	90	52.878	ENSFHEG00000012497	supt5h	92	53.934	Fundulus_heteroclitus
FBgn0040273	Spt5	79	59.578	ENSGMOG00000003422	supt5h	87	58.282	Gadus_morhua
FBgn0040273	Spt5	93	49.212	ENSGACG00000004934	supt5h	89	50.774	Gasterosteus_aculeatus
FBgn0040273	Spt5	85	56.270	ENSGAGG00000019112	SUPT5H	99	55.420	Gopherus_agassizii
FBgn0040273	Spt5	90	54.776	ENSGGOG00000014425	SUPT5H	94	54.244	Gorilla_gorilla
FBgn0040273	Spt5	90	53.883	ENSHBUG00000017144	supt5h	94	53.353	Haplochromis_burtoni
FBgn0040273	Spt5	90	54.400	ENSHGLG00000018339	SUPT5H	94	53.547	Heterocephalus_glaber_female
FBgn0040273	Spt5	90	53.884	ENSHGLG00100017126	SUPT5H	94	53.586	Heterocephalus_glaber_male
FBgn0040273	Spt5	90	52.958	ENSHCOG00000004932	supt5h	92	50.539	Hippocampus_comes
FBgn0040273	Spt5	90	55.102	ENSIPUG00000007308	supt5h	94	54.572	Ictalurus_punctatus
FBgn0040273	Spt5	90	53.981	ENSSTOG00000026638	SUPT5H	94	53.256	Ictidomys_tridecemlineatus
FBgn0040273	Spt5	90	54.810	ENSJJAG00000022374	Supt5	93	55.276	Jaculus_jaculus
FBgn0040273	Spt5	85	53.568	ENSKMAG00000004401	supt5h	89	53.257	Kryptolebias_marmoratus
FBgn0040273	Spt5	90	54.695	ENSLACG00000008663	SUPT5H	94	53.876	Latimeria_chalumnae
FBgn0040273	Spt5	80	51.872	ENSLOCG00000014703	SUPT5H	87	61.224	Lepisosteus_oculatus
FBgn0040273	Spt5	94	50.924	ENSLAFG00000027736	SUPT5H	94	51.498	Loxodonta_africana
FBgn0040273	Spt5	90	54.776	ENSMFAG00000038707	SUPT5H	94	54.244	Macaca_fascicularis
FBgn0040273	Spt5	90	54.776	ENSMMUG00000019372	SUPT5H	94	54.244	Macaca_mulatta
FBgn0040273	Spt5	90	54.776	ENSMNEG00000041553	SUPT5H	94	54.244	Macaca_nemestrina
FBgn0040273	Spt5	90	54.946	ENSMLEG00000036432	SUPT5H	95	54.510	Mandrillus_leucophaeus
FBgn0040273	Spt5	85	55.258	ENSMAMG00000019715	supt5h	94	53.951	Mastacembelus_armatus
FBgn0040273	Spt5	90	53.689	ENSMZEG00005024864	supt5h	94	53.158	Maylandia_zebra
FBgn0040273	Spt5	90	55.166	ENSMGAG00000012449	SUPT5H	94	54.634	Meleagris_gallopavo
FBgn0040273	Spt5	90	55.791	ENSMAUG00000009006	Supt5	94	55.488	Mesocricetus_auratus
FBgn0040273	Spt5	90	54.678	ENSMICG00000006115	SUPT5H	94	54.146	Microcebus_murinus
FBgn0040273	Spt5	90	55.025	ENSMOCG00000012211	Supt5	94	54.033	Microtus_ochrogaster
FBgn0040273	Spt5	90	53.554	ENSMMOG00000009770	supt5h	97	53.021	Mola_mola
FBgn0040273	Spt5	91	49.952	ENSMODG00000013570	SUPT5H	94	51.033	Monodelphis_domestica
FBgn0040273	Spt5	90	53.720	ENSMALG00000017833	supt5h	96	53.021	Monopterus_albus
FBgn0040273	Spt5	90	54.219	MGP_CAROLIEiJ_G0029441	Supt5	94	54.012	Mus_caroli
FBgn0040273	Spt5	90	54.106	ENSMUSG00000003435	Supt5	94	53.899	Mus_musculus
FBgn0040273	Spt5	90	54.413	MGP_PahariEiJ_G0012677	Supt5	94	54.207	Mus_pahari
FBgn0040273	Spt5	90	54.219	MGP_SPRETEiJ_G0030539	Supt5	94	54.012	Mus_spretus
FBgn0040273	Spt5	90	54.660	ENSMPUG00000017721	SUPT5H	94	54.130	Mustela_putorius_furo
FBgn0040273	Spt5	90	54.413	ENSMLUG00000013886	-	94	53.883	Myotis_lucifugus
FBgn0040273	Spt5	90	52.884	ENSMLUG00000008079	-	94	52.348	Myotis_lucifugus
FBgn0040273	Spt5	90	55.015	ENSNGAG00000022458	Supt5	94	53.996	Nannospalax_galili
FBgn0040273	Spt5	69	50.839	ENSNBRG00000005030	supt5h	64	50.129	Neolamprologus_brichardi
FBgn0040273	Spt5	90	53.216	ENSNLEG00000014365	SUPT5H	96	52.683	Nomascus_leucogenys
FBgn0040273	Spt5	83	60.766	ENSMEUG00000016423	SUPT5H	90	67.665	Notamacropus_eugenii
FBgn0040273	Spt5	87	52.965	ENSOPRG00000016844	SUPT5H	89	53.773	Ochotona_princeps
FBgn0040273	Spt5	90	54.360	ENSODEG00000016445	SUPT5H	94	53.831	Octodon_degus
FBgn0040273	Spt5	90	54.070	ENSONIG00000001100	supt5h	94	53.540	Oreochromis_niloticus
FBgn0040273	Spt5	70	59.533	ENSOANG00000008175	SUPT5H	88	59.533	Ornithorhynchus_anatinus
FBgn0040273	Spt5	90	54.138	ENSOCUG00000002155	SUPT5H	94	53.606	Oryctolagus_cuniculus
FBgn0040273	Spt5	85	54.845	ENSORLG00000000394	supt5h	88	54.180	Oryzias_latipes
FBgn0040273	Spt5	85	54.948	ENSORLG00020021680	supt5h	88	54.283	Oryzias_latipes_hni
FBgn0040273	Spt5	85	54.948	ENSORLG00015010686	supt5h	88	54.283	Oryzias_latipes_hsok
FBgn0040273	Spt5	90	54.369	ENSOGAG00000033979	SUPT5H	94	53.839	Otolemur_garnettii
FBgn0040273	Spt5	90	54.839	ENSOARG00000006174	SUPT5H	94	54.305	Ovis_aries
FBgn0040273	Spt5	90	54.776	ENSPPAG00000040180	SUPT5H	94	54.244	Pan_paniscus
FBgn0040273	Spt5	90	54.678	ENSPPRG00000009686	SUPT5H	94	54.146	Panthera_pardus
FBgn0040273	Spt5	90	54.776	ENSPTIG00000011633	SUPT5H	94	54.244	Panthera_tigris_altaica
FBgn0040273	Spt5	90	54.776	ENSPTRG00000010971	SUPT5H	94	54.244	Pan_troglodytes
FBgn0040273	Spt5	90	54.776	ENSPANG00000007383	SUPT5H	94	54.244	Papio_anubis
FBgn0040273	Spt5	90	54.961	ENSPKIG00000006261	supt5h	94	54.280	Paramormyrops_kingsleyae
FBgn0040273	Spt5	90	53.032	ENSPSIG00000014117	SUPT5H	94	52.505	Pelodiscus_sinensis
FBgn0040273	Spt5	86	53.157	ENSPMGG00000020581	supt5h	96	52.648	Periophthalmus_magnuspinnatus
FBgn0040273	Spt5	90	54.829	ENSPEMG00000015730	Supt5	94	53.839	Peromyscus_maniculatus_bairdii
FBgn0040273	Spt5	90	52.692	ENSPMAG00000006913	supt5h	88	53.285	Petromyzon_marinus
FBgn0040273	Spt5	90	54.403	ENSPCIG00000010477	SUPT5H	93	53.967	Phascolarctos_cinereus
FBgn0040273	Spt5	84	54.555	ENSPFOG00000011126	supt5h	88	55.022	Poecilia_formosa
FBgn0040273	Spt5	90	53.437	ENSPLAG00000013092	supt5h	88	54.124	Poecilia_latipinna
FBgn0040273	Spt5	83	54.669	ENSPMEG00000020479	supt5h	86	55.431	Poecilia_mexicana
FBgn0040273	Spt5	90	53.431	ENSPREG00000006712	supt5h	88	54.102	Poecilia_reticulata
FBgn0040273	Spt5	90	54.581	ENSPPYG00000009968	SUPT5H	93	54.049	Pongo_abelii
FBgn0040273	Spt5	90	43.133	ENSPCAG00000010830	SUPT5H	88	44.319	Procavia_capensis
FBgn0040273	Spt5	94	53.128	ENSPCOG00000021231	SUPT5H	99	52.617	Propithecus_coquereli
FBgn0040273	Spt5	66	61.711	ENSPVAG00000011129	SUPT5H	68	61.711	Pteropus_vampyrus
FBgn0040273	Spt5	90	51.838	ENSPNYG00000009203	supt5h	90	52.893	Pundamilia_nyererei
FBgn0040273	Spt5	91	50.911	ENSPNAG00000010925	supt5h	98	50.339	Pygocentrus_nattereri
FBgn0040273	Spt5	90	52.220	ENSRNOG00000032034	Supt5h	87	60.000	Rattus_norvegicus
FBgn0040273	Spt5	90	54.264	ENSRBIG00000039828	SUPT5H	94	53.756	Rhinopithecus_bieti
FBgn0040273	Spt5	90	54.776	ENSRROG00000019625	SUPT5H	94	54.244	Rhinopithecus_roxellana
FBgn0040273	Spt5	90	54.776	ENSSBOG00000022657	SUPT5H	94	54.244	Saimiri_boliviensis_boliviensis
FBgn0040273	Spt5	85	51.437	ENSSHAG00000009504	SUPT5H	97	51.232	Sarcophilus_harrisii
FBgn0040273	Spt5	90	54.864	ENSSFOG00015005973	supt5h	94	54.333	Scleropages_formosus
FBgn0040273	Spt5	93	49.485	ENSSMAG00000004503	supt5h	88	54.045	Scophthalmus_maximus
FBgn0040273	Spt5	90	53.571	ENSSDUG00000014520	supt5h	94	53.554	Seriola_dumerili
FBgn0040273	Spt5	90	53.565	ENSSLDG00000008112	supt5h	93	54.639	Seriola_lalandi_dorsalis
FBgn0040273	Spt5	85	53.767	ENSSPUG00000011434	SUPT5H	93	52.893	Sphenodon_punctatus
FBgn0040273	Spt5	90	54.333	ENSSPAG00000010429	supt5h	94	53.899	Stegastes_partitus
FBgn0040273	Spt5	90	53.839	ENSSSCG00000023556	SUPT5H	94	52.560	Sus_scrofa
FBgn0040273	Spt5	90	53.262	ENSTRUG00000002370	supt5h	94	53.165	Takifugu_rubripes
FBgn0040273	Spt5	91	53.359	ENSTNIG00000011178	supt5h	94	53.055	Tetraodon_nigroviridis
FBgn0040273	Spt5	62	51.183	ENSTBEG00000017617	SUPT5H	86	53.772	Tupaia_belangeri
FBgn0040273	Spt5	85	55.441	ENSTTRG00000003573	SUPT5H	89	54.882	Tursiops_truncatus
FBgn0040273	Spt5	90	54.660	ENSUAMG00000020014	SUPT5H	94	53.936	Ursus_americanus
FBgn0040273	Spt5	90	54.660	ENSUMAG00000019558	SUPT5H	96	53.936	Ursus_maritimus
FBgn0040273	Spt5	85	55.339	ENSVVUG00000006193	SUPT5H	92	54.779	Vulpes_vulpes
FBgn0040273	Spt5	91	53.422	ENSXETG00000002888	supt5h	94	53.405	Xenopus_tropicalis
FBgn0040273	Spt5	90	52.935	ENSXMAG00000004169	supt5h	89	53.464	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	12782658.28213523.	IDA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	15380072.	IMP	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISS	Process
GO:0000993	RNA polymerase II complex binding	12934007.	IDA	Function
GO:0000993	RNA polymerase II complex binding	28213523.	IDA	Function
GO:0003682	chromatin binding	28213523.	IDA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	28213523.	IDA	Function
GO:0005700	polytene chromosome	23209435.	IDA	Component
GO:0005703	polytene chromosome puff	11040216.11040217.12782658.12934007.	IDA	Component
GO:0005705	polytene chromosome interband	11040216.12782658.	IDA	Component
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0006368	transcription elongation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0006368	transcription elongation from RNA polymerase II promoter	12782658.	IDA	Process
GO:0006368	transcription elongation from RNA polymerase II promoter	-	ISS	Process
GO:0007549	dosage compensation	23209435.	IMP	Process
GO:0008023	transcription elongation factor complex	12934007.	IPI	Component
GO:0032044	DSIF complex	21873635.	IBA	Component
GO:0032044	DSIF complex	28213523.	IDA	Component
GO:0032044	DSIF complex	-	ISS	Component
GO:0032785	negative regulation of DNA-templated transcription, elongation	12782658.	IDA	Process
GO:0032785	negative regulation of DNA-templated transcription, elongation	-	ISS	Process
GO:0032786	positive regulation of DNA-templated transcription, elongation	-	ISS	Process
GO:0044877	protein-containing complex binding	12934007.	IDA	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	15380072.	IMP	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISS	Process
GO:0046982	protein heterodimerization activity	-	ISS	Function