EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0040290 (Gene tree)
Gene ID: 53438
Gene Symbol: RecQ4
Alias: -
Full Name: RecQ4 helicase
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 5339 bases
Position: chr3L:8170640-8175978
Accession: FBgn0040290
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0076452	DEAD	PF00270.29	7.6e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0076729	-	5041	-	FBpp0076452	1579 (aa)	-	Q9NH11

Gene Model

Click here to download FBgn0040290's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0040290's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0040290	RecQ4	53	40.329	ENSAPOG00000016945	recql4	66	40.503	Acanthochromis_polyacanthus
FBgn0040290	RecQ4	54	44.095	ENSGAGG00000021941	RECQL4	63	44.055	Gopherus_agassizii
FBgn0040290	RecQ4	50	54.042	ENSLACG00000004466	recql4	64	40.848	Latimeria_chalumnae
FBgn0040290	RecQ4	52	43.935	ENSMAUG00000008628	Recql4	70	43.915	Mesocricetus_auratus
FBgn0040290	RecQ4	53	44.416	ENSSHAG00000010333	-	70	44.488	Sarcophilus_harrisii
FBgn0040290	RecQ4	50	40.028	ENSSPUG00000018087	RECQL4	94	42.667	Sphenodon_punctatus
FBgn0040290	RecQ4	51	53.258	ENSXETG00000016582	recql4	61	53.258	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000405	bubble DNA binding	21873635.	IBA	Function
GO:0000724	double-strand break repair via homologous recombination	21873635.	IBA	Process
GO:0000781	chromosome, telomeric region	21873635.	IBA	Component
GO:0000785	chromatin	18755177.	IDA	Component
GO:0002164	larval development	18755177.	IMP	Process
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003678	DNA helicase activity	10908583.	ISS	Function
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003697	single-stranded DNA binding	19759018.	IDA	Function
GO:0004386	helicase activity	10908586.	ISS	Function
GO:0005515	protein binding	21873635.	IBA	Function
GO:0005524	ATP binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	18755177.	IDA	Component
GO:0005694	chromosome	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	18755177.	IDA	Component
GO:0006260	DNA replication	21873635.	IBA	Process
GO:0006260	DNA replication	18755177.	IMP	Process
GO:0006260	DNA replication	-	ISS	Process
GO:0006281	DNA repair	21873635.	IBA	Process
GO:0006281	DNA repair	-	ISS	Process
GO:0006284	base-excision repair	21873635.	IBA	Process
GO:0006284	base-excision repair	19572017.	IMP	Process
GO:0006302	double-strand break repair	19572017.	IMP	Process
GO:0006310	DNA recombination	21873635.	IBA	Process
GO:0007307	eggshell chorion gene amplification	18755177.	IMP	Process
GO:0008094	DNA-dependent ATPase activity	19759018.	IDA	Function
GO:0008094	DNA-dependent ATPase activity	-	ISS	Function
GO:0008270	zinc ion binding	-	IEA	Function
GO:0008284	positive regulation of cell proliferation	21873635.	IBA	Process
GO:0008284	positive regulation of cell proliferation	19572017.	IMP	Process
GO:0009378	four-way junction helicase activity	21873635.	IBA	Function
GO:0010971	positive regulation of G2/M transition of mitotic cell cycle	21873635.	IBA	Process
GO:0010971	positive regulation of G2/M transition of mitotic cell cycle	19572017.	IMP	Process
GO:0032357	oxidized purine DNA binding	21873635.	IBA	Function
GO:0032508	DNA duplex unwinding	21873635.	IBA	Process
GO:0032508	DNA duplex unwinding	19759018.	IDA	Process
GO:0036292	DNA rewinding	19759018.	IDA	Process
GO:0036310	annealing helicase activity	21873635.	IBA	Function
GO:0043140	ATP-dependent 3'-5' DNA helicase activity	21873635.	IBA	Function
GO:0043140	ATP-dependent 3'-5' DNA helicase activity	19759018.	IDA	Function
GO:0045740	positive regulation of DNA replication	21873635.	IBA	Process
GO:0045740	positive regulation of DNA replication	19572017.	IMP	Process
GO:0048477	oogenesis	19572017.	IMP	Process
GO:0051301	cell division	18755177.	IMP	Process
GO:0061820	telomeric D-loop disassembly	21873635.	IBA	Process
GO:0061821	telomeric D-loop binding	21873635.	IBA	Function