EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0040534 (Gene tree)
Gene ID: 50007
Gene Symbol: Sf3b5
Alias: -
Full Name: Splicing factor 3b subunit 5
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 370 bases
Position: chr3R:9014972-9015341
Accession: FBgn0040534
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0081484	SF3b10	PF07189.11	4.8e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0082006	-	370	-	FBpp0081484	85 (aa)	-	Q9VHI4

Gene Model

Click here to download FBgn0040534's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0040534's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0040534	Sf3b5	100	83.529	ENSG00000169976	SF3B5	99	83.529	Homo_sapiens
FBgn0040534	Sf3b5	100	80.000	ENSAPOG00000001721	sf3b5	99	80.000	Acanthochromis_polyacanthus
FBgn0040534	Sf3b5	100	82.353	ENSACIG00000008106	sf3b5	99	82.353	Amphilophus_citrinellus
FBgn0040534	Sf3b5	100	80.000	ENSAOCG00000023367	sf3b5	99	80.000	Amphiprion_ocellaris
FBgn0040534	Sf3b5	100	80.000	ENSAPEG00000004605	sf3b5	99	80.000	Amphiprion_percula
FBgn0040534	Sf3b5	100	81.176	ENSATEG00000009720	sf3b5	99	81.176	Anabas_testudineus
FBgn0040534	Sf3b5	96	84.146	ENSACAG00000007948	SF3B5	95	84.146	Anolis_carolinensis
FBgn0040534	Sf3b5	100	83.529	ENSANAG00000019999	SF3B5	99	83.529	Aotus_nancymaae
FBgn0040534	Sf3b5	100	82.353	ENSACLG00000022410	sf3b5	99	82.353	Astatotilapia_calliptera
FBgn0040534	Sf3b5	100	83.529	ENSBTAG00000009795	SF3B5	99	83.529	Bos_taurus
FBgn0040534	Sf3b5	100	83.529	ENSCJAG00000046566	SF3B5	99	83.529	Callithrix_jacchus
FBgn0040534	Sf3b5	100	83.529	ENSCAFG00000032495	SF3B5	99	83.529	Canis_familiaris
FBgn0040534	Sf3b5	100	83.529	ENSCAFG00020000873	SF3B5	99	83.529	Canis_lupus_dingo
FBgn0040534	Sf3b5	100	83.529	ENSCHIG00000007987	SF3B5	99	83.529	Capra_hircus
FBgn0040534	Sf3b5	100	83.529	ENSTSYG00000012236	SF3B5	99	83.529	Carlito_syrichta
FBgn0040534	Sf3b5	100	83.529	ENSCPOG00000012435	SF3B5	99	83.529	Cavia_porcellus
FBgn0040534	Sf3b5	100	83.529	ENSCCAG00000006528	SF3B5	99	83.529	Cebus_capucinus
FBgn0040534	Sf3b5	100	83.529	ENSCATG00000010192	SF3B5	99	83.529	Cercocebus_atys
FBgn0040534	Sf3b5	100	83.529	ENSCLAG00000017802	SF3B5	99	83.529	Chinchilla_lanigera
FBgn0040534	Sf3b5	100	83.529	ENSCSAG00000000187	SF3B5	99	83.529	Chlorocebus_sabaeus
FBgn0040534	Sf3b5	100	83.529	ENSCPBG00000017148	SF3B5	99	83.529	Chrysemys_picta_bellii
FBgn0040534	Sf3b5	96	76.829	ENSCING00000021953	-	95	76.829	Ciona_intestinalis
FBgn0040534	Sf3b5	100	83.529	ENSCANG00000002639	SF3B5	99	83.529	Colobus_angolensis_palliatus
FBgn0040534	Sf3b5	100	82.353	ENSCGRG00001007249	Sf3b5	99	82.353	Cricetulus_griseus_chok1gshd
FBgn0040534	Sf3b5	100	82.353	ENSCGRG00000019185	Sf3b5	99	82.353	Cricetulus_griseus_crigri
FBgn0040534	Sf3b5	100	81.176	ENSCSEG00000003216	sf3b5	99	81.176	Cynoglossus_semilaevis
FBgn0040534	Sf3b5	100	81.176	ENSCVAG00000005040	sf3b5	99	81.176	Cyprinodon_variegatus
FBgn0040534	Sf3b5	100	83.529	ENSDARG00000016855	sf3b5	99	83.529	Danio_rerio
FBgn0040534	Sf3b5	100	83.529	ENSDNOG00000048829	SF3B5	81	83.529	Dasypus_novemcinctus
FBgn0040534	Sf3b5	100	83.529	ENSDORG00000005838	Sf3b5	99	83.529	Dipodomys_ordii
FBgn0040534	Sf3b5	100	83.529	ENSETEG00000004047	SF3B5	99	83.529	Echinops_telfairi
FBgn0040534	Sf3b5	100	82.353	ENSEBUG00000002311	sf3b5	100	82.353	Eptatretus_burgeri
FBgn0040534	Sf3b5	100	83.529	ENSEASG00005009522	SF3B5	99	83.529	Equus_asinus_asinus
FBgn0040534	Sf3b5	100	83.529	ENSECAG00000005457	SF3B5	99	83.529	Equus_caballus
FBgn0040534	Sf3b5	100	81.176	ENSELUG00000014290	SF3B5	99	81.176	Esox_lucius
FBgn0040534	Sf3b5	100	83.529	ENSFCAG00000000936	SF3B5	99	83.529	Felis_catus
FBgn0040534	Sf3b5	96	84.146	ENSFALG00000015012	SF3B5	95	84.146	Ficedula_albicollis
FBgn0040534	Sf3b5	100	83.529	ENSFDAG00000003664	SF3B5	99	83.529	Fukomys_damarensis
FBgn0040534	Sf3b5	100	81.176	ENSFHEG00000020301	sf3b5	99	81.176	Fundulus_heteroclitus
FBgn0040534	Sf3b5	100	82.353	ENSGMOG00000019972	sf3b5	99	82.353	Gadus_morhua
FBgn0040534	Sf3b5	96	85.366	ENSGALG00000030824	SF3B5	95	85.366	Gallus_gallus
FBgn0040534	Sf3b5	100	81.176	ENSGAFG00000000271	sf3b5	99	81.176	Gambusia_affinis
FBgn0040534	Sf3b5	100	81.176	ENSGACG00000010363	sf3b5	99	81.176	Gasterosteus_aculeatus
FBgn0040534	Sf3b5	100	77.647	ENSGAGG00000000646	-	99	77.647	Gopherus_agassizii
FBgn0040534	Sf3b5	100	83.529	ENSGAGG00000011434	SF3B5	99	83.529	Gopherus_agassizii
FBgn0040534	Sf3b5	100	83.529	ENSGGOG00000001537	SF3B5	99	83.529	Gorilla_gorilla
FBgn0040534	Sf3b5	100	82.353	ENSHBUG00000008925	sf3b5	99	82.353	Haplochromis_burtoni
FBgn0040534	Sf3b5	100	83.529	ENSHGLG00000021406	SF3B5	99	83.529	Heterocephalus_glaber_female
FBgn0040534	Sf3b5	100	83.529	ENSHGLG00100020370	SF3B5	99	83.529	Heterocephalus_glaber_male
FBgn0040534	Sf3b5	100	81.176	ENSHCOG00000016806	sf3b5	99	81.176	Hippocampus_comes
FBgn0040534	Sf3b5	100	81.176	ENSHCOG00000016802	sf3b5	99	81.176	Hippocampus_comes
FBgn0040534	Sf3b5	100	81.176	ENSHCOG00000009115	-	99	81.176	Hippocampus_comes
FBgn0040534	Sf3b5	100	83.529	ENSIPUG00000015166	sf3b5	99	83.529	Ictalurus_punctatus
FBgn0040534	Sf3b5	100	83.529	ENSSTOG00000003347	SF3B5	99	83.529	Ictidomys_tridecemlineatus
FBgn0040534	Sf3b5	100	83.529	ENSJJAG00000001857	Sf3b5	99	83.529	Jaculus_jaculus
FBgn0040534	Sf3b5	100	81.176	ENSKMAG00000002249	sf3b5	99	81.176	Kryptolebias_marmoratus
FBgn0040534	Sf3b5	100	81.176	ENSLBEG00000019847	sf3b5	99	81.176	Labrus_bergylta
FBgn0040534	Sf3b5	100	82.353	ENSLACG00000000946	SF3B5	99	82.353	Latimeria_chalumnae
FBgn0040534	Sf3b5	100	82.353	ENSLOCG00000017352	sf3b5	99	82.353	Lepisosteus_oculatus
FBgn0040534	Sf3b5	100	83.529	ENSLAFG00000032489	SF3B5	99	83.529	Loxodonta_africana
FBgn0040534	Sf3b5	100	83.529	ENSMFAG00000029753	SF3B5	99	83.529	Macaca_fascicularis
FBgn0040534	Sf3b5	100	83.529	ENSMMUG00000047691	SF3B5	99	83.529	Macaca_mulatta
FBgn0040534	Sf3b5	100	83.529	ENSMNEG00000028236	SF3B5	99	83.529	Macaca_nemestrina
FBgn0040534	Sf3b5	100	83.529	ENSMLEG00000007622	SF3B5	99	83.529	Mandrillus_leucophaeus
FBgn0040534	Sf3b5	100	82.353	ENSMAMG00000021639	sf3b5	99	82.353	Mastacembelus_armatus
FBgn0040534	Sf3b5	100	70.588	ENSMZEG00005027407	sf3b5	99	70.588	Maylandia_zebra
FBgn0040534	Sf3b5	100	82.353	ENSMZEG00005027408	sf3b5	99	82.353	Maylandia_zebra
FBgn0040534	Sf3b5	100	82.353	ENSMZEG00005028115	SF3B5	99	82.353	Maylandia_zebra
FBgn0040534	Sf3b5	96	85.366	ENSMGAG00000015849	SF3B5	95	85.366	Meleagris_gallopavo
FBgn0040534	Sf3b5	100	82.353	ENSMAUG00000008283	Sf3b5	99	82.353	Mesocricetus_auratus
FBgn0040534	Sf3b5	100	83.529	ENSMICG00000014922	SF3B5	99	83.529	Microcebus_murinus
FBgn0040534	Sf3b5	100	82.353	ENSMOCG00000001713	Sf3b5	99	82.353	Microtus_ochrogaster
FBgn0040534	Sf3b5	100	82.353	ENSMMOG00000007956	sf3b5	99	82.353	Mola_mola
FBgn0040534	Sf3b5	100	83.529	ENSMODG00000023291	SF3B5	83	83.529	Monodelphis_domestica
FBgn0040534	Sf3b5	92	81.481	ENSMALG00000020357	sf3b5	99	81.481	Monopterus_albus
FBgn0040534	Sf3b5	100	82.353	MGP_CAROLIEiJ_G0015120	Sf3b5	99	82.353	Mus_caroli
FBgn0040534	Sf3b5	100	82.353	ENSMUSG00000078348	Sf3b5	99	82.353	Mus_musculus
FBgn0040534	Sf3b5	100	82.353	MGP_PahariEiJ_G0023739	Sf3b5	99	82.353	Mus_pahari
FBgn0040534	Sf3b5	100	82.353	MGP_SPRETEiJ_G0015928	Sf3b5	99	82.353	Mus_spretus
FBgn0040534	Sf3b5	100	83.529	ENSMPUG00000018379	SF3B5	99	83.529	Mustela_putorius_furo
FBgn0040534	Sf3b5	100	83.529	ENSMLUG00000028504	-	99	83.529	Myotis_lucifugus
FBgn0040534	Sf3b5	96	80.488	ENSMLUG00000025546	-	95	80.488	Myotis_lucifugus
FBgn0040534	Sf3b5	100	78.824	ENSMLUG00000010802	-	99	78.824	Myotis_lucifugus
FBgn0040534	Sf3b5	100	83.529	ENSNGAG00000010732	Sf3b5	99	83.529	Nannospalax_galili
FBgn0040534	Sf3b5	100	82.353	ENSNBRG00000014383	sf3b5	99	82.353	Neolamprologus_brichardi
FBgn0040534	Sf3b5	100	83.529	ENSNLEG00000019307	SF3B5	99	83.529	Nomascus_leucogenys
FBgn0040534	Sf3b5	100	83.529	ENSMEUG00000005445	-	99	83.529	Notamacropus_eugenii
FBgn0040534	Sf3b5	100	83.529	ENSMEUG00000005440	-	99	83.529	Notamacropus_eugenii
FBgn0040534	Sf3b5	96	85.366	ENSOPRG00000015107	SF3B5	95	85.366	Ochotona_princeps
FBgn0040534	Sf3b5	100	83.529	ENSODEG00000019507	SF3B5	99	83.529	Octodon_degus
FBgn0040534	Sf3b5	100	82.353	ENSONIG00000020725	sf3b5	99	82.353	Oreochromis_niloticus
FBgn0040534	Sf3b5	68	81.034	ENSOANG00000015301	SF3B5	95	81.034	Ornithorhynchus_anatinus
FBgn0040534	Sf3b5	100	83.529	ENSOCUG00000008752	SF3B5	99	83.529	Oryctolagus_cuniculus
FBgn0040534	Sf3b5	100	83.529	ENSORLG00000004925	sf3b5	99	83.529	Oryzias_latipes
FBgn0040534	Sf3b5	100	83.529	ENSORLG00020011625	sf3b5	99	83.529	Oryzias_latipes_hni
FBgn0040534	Sf3b5	100	83.529	ENSORLG00015017061	sf3b5	99	83.529	Oryzias_latipes_hsok
FBgn0040534	Sf3b5	100	83.529	ENSOMEG00000010620	sf3b5	99	83.529	Oryzias_melastigma
FBgn0040534	Sf3b5	100	83.529	ENSOGAG00000012152	SF3B5	99	83.529	Otolemur_garnettii
FBgn0040534	Sf3b5	92	85.897	ENSOARG00000019486	-	94	85.897	Ovis_aries
FBgn0040534	Sf3b5	100	81.176	ENSOARG00000002617	SF3B5	99	81.176	Ovis_aries
FBgn0040534	Sf3b5	100	83.529	ENSPPAG00000012940	SF3B5	99	83.529	Pan_paniscus
FBgn0040534	Sf3b5	100	83.529	ENSPPRG00000021262	SF3B5	99	83.529	Panthera_pardus
FBgn0040534	Sf3b5	100	83.529	ENSPTIG00000001952	SF3B5	99	83.529	Panthera_tigris_altaica
FBgn0040534	Sf3b5	100	83.529	ENSPTRG00000018676	SF3B5	99	83.529	Pan_troglodytes
FBgn0040534	Sf3b5	100	83.529	ENSPANG00000034242	SF3B5	99	83.529	Papio_anubis
FBgn0040534	Sf3b5	100	82.353	ENSPKIG00000006057	sf3b5	99	82.353	Paramormyrops_kingsleyae
FBgn0040534	Sf3b5	100	83.529	ENSPSIG00000001262	SF3B5	99	83.529	Pelodiscus_sinensis
FBgn0040534	Sf3b5	100	80.000	ENSPMGG00000014804	sf3b5	99	80.000	Periophthalmus_magnuspinnatus
FBgn0040534	Sf3b5	100	82.353	ENSPEMG00000012931	Sf3b5	99	82.353	Peromyscus_maniculatus_bairdii
FBgn0040534	Sf3b5	100	85.882	ENSPMAG00000010296	sf3b5	99	85.882	Petromyzon_marinus
FBgn0040534	Sf3b5	100	63.529	ENSPCIG00000025007	-	99	63.529	Phascolarctos_cinereus
FBgn0040534	Sf3b5	93	87.342	ENSPCIG00000011344	-	77	87.342	Phascolarctos_cinereus
FBgn0040534	Sf3b5	100	81.176	ENSPFOG00000019994	sf3b5	99	81.176	Poecilia_formosa
FBgn0040534	Sf3b5	100	81.176	ENSPLAG00000008412	sf3b5	99	81.176	Poecilia_latipinna
FBgn0040534	Sf3b5	100	81.176	ENSPMEG00000020050	sf3b5	99	81.176	Poecilia_mexicana
FBgn0040534	Sf3b5	100	81.176	ENSPREG00000009242	sf3b5	99	81.176	Poecilia_reticulata
FBgn0040534	Sf3b5	100	83.529	ENSPPYG00000017068	SF3B5	99	83.529	Pongo_abelii
FBgn0040534	Sf3b5	100	83.529	ENSPCAG00000009332	SF3B5	99	83.529	Procavia_capensis
FBgn0040534	Sf3b5	100	83.529	ENSPCOG00000013754	SF3B5	99	83.529	Propithecus_coquereli
FBgn0040534	Sf3b5	56	83.333	ENSPVAG00000002820	SF3B5	100	83.333	Pteropus_vampyrus
FBgn0040534	Sf3b5	100	82.353	ENSPNYG00000002075	sf3b5	99	82.353	Pundamilia_nyererei
FBgn0040534	Sf3b5	100	84.706	ENSPNAG00000004942	sf3b5	99	84.706	Pygocentrus_nattereri
FBgn0040534	Sf3b5	100	82.353	ENSRNOG00000014908	Sf3b5	99	82.353	Rattus_norvegicus
FBgn0040534	Sf3b5	100	83.529	ENSRBIG00000006301	SF3B5	99	83.529	Rhinopithecus_bieti
FBgn0040534	Sf3b5	100	83.529	ENSRROG00000037067	SF3B5	99	83.529	Rhinopithecus_roxellana
FBgn0040534	Sf3b5	100	83.529	ENSSBOG00000006122	SF3B5	99	83.529	Saimiri_boliviensis_boliviensis
FBgn0040534	Sf3b5	100	83.529	ENSSHAG00000015670	SF3B5	99	83.529	Sarcophilus_harrisii
FBgn0040534	Sf3b5	100	83.529	ENSSFOG00015015767	sf3b5	99	83.529	Scleropages_formosus
FBgn0040534	Sf3b5	100	81.176	ENSSMAG00000018852	sf3b5	99	81.176	Scophthalmus_maximus
FBgn0040534	Sf3b5	100	81.176	ENSSDUG00000018161	sf3b5	99	81.176	Seriola_dumerili
FBgn0040534	Sf3b5	100	81.176	ENSSLDG00000014547	sf3b5	99	81.176	Seriola_lalandi_dorsalis
FBgn0040534	Sf3b5	100	83.529	ENSSARG00000007820	SF3B5	99	83.529	Sorex_araneus
FBgn0040534	Sf3b5	100	80.000	ENSSPAG00000009244	sf3b5	99	80.000	Stegastes_partitus
FBgn0040534	Sf3b5	100	80.000	ENSSPAG00000017371	-	99	80.000	Stegastes_partitus
FBgn0040534	Sf3b5	100	83.529	ENSSSCG00000035578	SF3B5	99	83.529	Sus_scrofa
FBgn0040534	Sf3b5	96	85.366	ENSTGUG00000010810	SF3B5	95	85.366	Taeniopygia_guttata
FBgn0040534	Sf3b5	100	81.176	ENSTRUG00000005577	sf3b5	99	81.176	Takifugu_rubripes
FBgn0040534	Sf3b5	100	81.176	ENSTNIG00000001265	sf3b5	99	81.176	Tetraodon_nigroviridis
FBgn0040534	Sf3b5	100	84.706	ENSTBEG00000003072	SF3B5	99	84.706	Tupaia_belangeri
FBgn0040534	Sf3b5	100	83.529	ENSTTRG00000008817	SF3B5	99	83.529	Tursiops_truncatus
FBgn0040534	Sf3b5	100	83.529	ENSUAMG00000027296	SF3B5	99	83.529	Ursus_americanus
FBgn0040534	Sf3b5	100	83.529	ENSUMAG00000005448	SF3B5	99	83.529	Ursus_maritimus
FBgn0040534	Sf3b5	100	83.529	ENSVPAG00000003826	SF3B5	99	83.529	Vicugna_pacos
FBgn0040534	Sf3b5	100	83.529	ENSVVUG00000004703	SF3B5	99	83.529	Vulpes_vulpes
FBgn0040534	Sf3b5	100	82.353	ENSXETG00000021409	sf3b5	99	82.353	Xenopus_tropicalis
FBgn0040534	Sf3b5	100	81.176	ENSXMAG00000019971	sf3b5	99	81.176	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000124	SAGA complex	27185460.	IDA	Component
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005686	U2 snRNP	27185460.	IDA	Component
GO:0007283	spermatogenesis	27035939.	IMP	Process
GO:0010468	regulation of gene expression	27185460.	IMP	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component