EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: FBgn0041188 (Gene tree)
Gene ID: 41883
Gene Symbol: Atx2
Alias: -
Full Name: Ataxin-2
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 8855 bases
Position: chr3R:15408423-15417277
Accession: FBgn0041188
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0082557	PAM2	PF07145.15	0.00021	1	1
FBpp0082556	PAM2	PF07145.15	0.00023	1	1
FBpp0310750	PAM2	PF07145.15	0.00023	1	1
FBpp0082557	LsmAD	PF06741.13	9.6e-13	1	1
FBpp0082556	LsmAD	PF06741.13	1.1e-12	1	1
FBpp0310750	LsmAD	PF06741.13	1.1e-12	1	1
FBpp0082555	LsmAD	PF06741.13	1.2e-12	1	1
FBpp0082555	SM-ATX	PF14438.6	5.7e-17	1	1
FBpp0082557	SM-ATX	PF14438.6	2.1e-16	1	1
FBpp0082556	SM-ATX	PF14438.6	2.7e-16	1	1
FBpp0310750	SM-ATX	PF14438.6	2.7e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0083101	-	4323	-	FBpp0082557	888 (aa)	-	A0A0B4LH64
FBtr0083100	-	4999	-	FBpp0082556	1023 (aa)	-	A0A0B4LH64
FBtr0083099	-	4533	-	FBpp0082555	1084 (aa)	-	Q8SWR8
FBtr0344377	-	4935	-	FBpp0310750	1023 (aa)	-	A0A0B4LH64

Gene Model

Click here to download FBgn0041188's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0041188's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	23687048.	IPI	Function
GO:0005737	cytoplasm	26896675.	HDA	Component
GO:0005737	cytoplasm	12524342.	IDA	Component
GO:0007614	short-term memory	24344294.	IMP	Process
GO:0007616	long-term memory	24344294.	IMP	Process
GO:0009994	oocyte differentiation	12524342.	IMP	Process
GO:0010494	cytoplasmic stress granule	21873635.	IBA	Component
GO:0010603	regulation of cytoplasmic mRNA processing body assembly	21873635.	IBA	Process
GO:0022416	chaeta development	12524342.	IMP	Process
GO:0030833	regulation of actin filament polymerization	12524342.	IMP	Process
GO:0032092	positive regulation of protein binding	23687048.	IMP	Process
GO:0034063	stress granule assembly	21873635.	IBA	Process
GO:0042051	compound eye photoreceptor development	18271626.	IMP	Process
GO:0045475	locomotor rhythm	23687047.23687048.	IMP	Process
GO:0046959	habituation	21795609.24344294.	IMP	Process
GO:0048749	compound eye development	12524342.	IMP	Process
GO:0051823	regulation of synapse structural plasticity	21795609.	IMP	Process
GO:0060965	negative regulation of gene silencing by miRNA	21795609.	IMP	Process
GO:0090328	regulation of olfactory learning	21795609.24344294.	IMP	Process
GO:0097167	circadian regulation of translation	23687048.	IGI	Process
GO:0097167	circadian regulation of translation	23687047.	IMP	Process
GO:0097167	circadian regulation of translation	23687047.	IPI	Process
GO:1901216	positive regulation of neuron death	18271626.	IMP	Process