EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: FBgn0041775 (Gene tree)
Gene ID: 39430
Gene Symbol: tral
Alias: -
Full Name: trailer hitch
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 5896 bases
Position: chr3L:12515059-12520954
Accession: FBgn0041775
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0075691	FDF	PF09532.10	5.8e-37	1	2
FBpp0075691	FDF	PF09532.10	5.8e-37	2	2
FBpp0304881	FDF	PF09532.10	5.8e-37	1	2
FBpp0304881	FDF	PF09532.10	5.8e-37	2	2
FBpp0304885	FDF	PF09532.10	5.9e-37	1	2
FBpp0304885	FDF	PF09532.10	5.9e-37	2	2
FBpp0304882	FDF	PF09532.10	6e-37	1	2
FBpp0304882	FDF	PF09532.10	6e-37	2	2
FBpp0304887	FDF	PF09532.10	6e-37	1	2
FBpp0304887	FDF	PF09532.10	6e-37	2	2
FBpp0304884	FDF	PF09532.10	8.4e-26	1	2
FBpp0304884	FDF	PF09532.10	8.4e-26	2	2
FBpp0304886	FDF	PF09532.10	8.4e-26	1	2
FBpp0304886	FDF	PF09532.10	8.4e-26	2	2
FBpp0304883	FDF	PF09532.10	2.9e-25	1	2
FBpp0304883	FDF	PF09532.10	2.9e-25	2	2
FBpp0304888	FDF	PF09532.10	2.9e-25	1	2
FBpp0304888	FDF	PF09532.10	2.9e-25	2	2
FBpp0304883	LSM14	PF12701.7	3.6e-28	1	1
FBpp0304884	LSM14	PF12701.7	3.6e-28	1	1
FBpp0304888	LSM14	PF12701.7	3.6e-28	1	1
FBpp0304886	LSM14	PF12701.7	3.6e-28	1	1
FBpp0304882	LSM14	PF12701.7	3.7e-28	1	1
FBpp0304887	LSM14	PF12701.7	3.7e-28	1	1
FBpp0075691	LSM14	PF12701.7	3.7e-28	1	1
FBpp0304881	LSM14	PF12701.7	3.7e-28	1	1
FBpp0304885	LSM14	PF12701.7	3.7e-28	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0332638	-	2866	-	FBpp0304884	642 (aa)	-	M9PCB7
FBtr0332639	-	2899	-	FBpp0304885	653 (aa)	-	M9PI44
FBtr0332636	-	2908	-	FBpp0304882	656 (aa)	-	M9PF14
FBtr0332637	-	4137	-	FBpp0304883	646 (aa)	-	M9PFF9
FBtr0075959	-	2896	-	FBpp0075691	652 (aa)	-	Q9VTZ0
FBtr0332635	-	4155	-	FBpp0304881	652 (aa)	-	M9PI44
FBtr0332642	-	2881	-	FBpp0304888	647 (aa)	-	M9PFG3
FBtr0332641	-	2911	-	FBpp0304887	657 (aa)	-	M9PF20
FBtr0332640	-	2869	-	FBpp0304886	643 (aa)	-	M9PCB7

Gene Model

Click here to download FBgn0041775's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0041775's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000226	microtubule cytoskeleton organization	19217894.	IMP	Process
GO:0000932	P-body	16256742.	IDA	Component
GO:0005515	protein binding	16256742.21447556.	IPI	Function
GO:0005783	endoplasmic reticulum	16256742.	IDA	Component
GO:0005829	cytosol	25294944.	HDA	Component
GO:0007029	endoplasmic reticulum organization	16256742.	IMP	Process
GO:0010529	negative regulation of transposition	21447556.	IMP	Process
GO:0017151	DEAD/H-box RNA helicase binding	16256742.17178403.	IPI	Function
GO:0030036	actin cytoskeleton organization	19217894.	IMP	Process
GO:0043186	P granule	21447556.	IDA	Component
GO:0045169	fusome	18355804.	IDA	Component
GO:0070863	positive regulation of protein exit from endoplasmic reticulum	16256742.	IMP	Process
GO:0071598	neuronal ribonucleoprotein granule	17178403.	IDA	Component
GO:1990124	messenger ribonucleoprotein complex	16256742.17178403.	IDA	Component
GO:2000017	positive regulation of determination of dorsal identity	16256742.	IMP	Process