EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0046214 (Gene tree)
Gene ID: 43016
Gene Symbol: vig2
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 2247 bases
Position: chr3R:25123373-25125619
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0084151	HABP4_PAI-RBP1	PF04774.15	5.3e-27	1	1
FBpp0084152	HABP4_PAI-RBP1	PF04774.15	5.3e-27	1	1
FBpp0112266	HABP4_PAI-RBP1	PF04774.15	5.3e-27	1	1
FBpp0084150	HABP4_PAI-RBP1	PF04774.15	6e-27	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0084777	-	1549	-	FBpp0084152	412 (aa)	-	Q960D3
FBtr0084776	-	1701	-	FBpp0084151	412 (aa)	-	Q960D3
FBtr0084775	-	1500	-	FBpp0084150	443 (aa)	-	A0A0H4CMP0
FBtr0113354	-	1553	-	FBpp0112266	412 (aa)	-	Q960D3

Gene Model

Click here to download FBgn0046214's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0046214's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0046214	vig2	65	49.315	FBgn0024183	vig	100	42.063
FBgn0046214	vig2	80	96.061	FBgn0265047	FDY	100	96.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0046214	vig2	52	35.371	ENSELUG00000004698	serbp1b	93	30.303	Esox_lucius
FBgn0046214	vig2	64	35.172	ENSMAMG00000018229	serbp1a	92	33.514	Mastacembelus_armatus
FBgn0046214	vig2	77	30.226	ENSMMOG00000001426	serbp1a	93	33.420	Mola_mola

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	19584931.	IDA	Component
GO:0005700	polytene chromosome	19584931.	IDA	Component
GO:0005701	polytene chromosome chromocenter	19584931.	IDA	Component
GO:0005703	polytene chromosome puff	19584931.	IDA	Component
GO:0005737	cytoplasm	19584931.	IDA	Component
GO:0031935	regulation of chromatin silencing	20838586.	IMP	Process
GO:0051567	histone H3-K9 methylation	19584931.	IMP	Process
GO:0070828	heterochromatin organization	19584931.	IMP	Process