EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0050342 (Gene tree)
Gene ID: 35934
Gene Symbol: Prp38
Alias: -
Full Name: pre-mRNA processing factor 38
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 1196 bases
Position: chr2R:9143956-9145151
Accession: FBgn0050342
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0087663	PRP38	PF03371.15	2.3e-61	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0088582	-	1196	-	FBpp0087663	330 (aa)	-	Q7JVL3

Gene Model

Click here to download FBgn0050342's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0050342's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0050342	Prp38	57	76.596	ENSG00000134748	PRPF38A	63	75.635	Homo_sapiens
FBgn0050342	Prp38	57	76.596	ENSAMEG00000009319	PRPF38A	63	75.635	Ailuropoda_melanoleuca
FBgn0050342	Prp38	90	52.365	ENSACIG00000012292	prpf38a	67	70.244	Amphilophus_citrinellus
FBgn0050342	Prp38	57	74.332	ENSATEG00000004608	prpf38a	65	72.139	Anabas_testudineus
FBgn0050342	Prp38	57	73.404	ENSACAG00000008249	PRPF38A	65	72.277	Anolis_carolinensis
FBgn0050342	Prp38	57	76.596	ENSANAG00000027839	PRPF38A	63	75.635	Aotus_nancymaae
FBgn0050342	Prp38	58	45.361	ENSANAG00000029204	-	61	45.274	Aotus_nancymaae
FBgn0050342	Prp38	57	72.872	ENSACLG00000021595	prpf38a	94	55.137	Astatotilapia_calliptera
FBgn0050342	Prp38	57	75.000	ENSAMXG00000029274	prpf38a	67	70.616	Astyanax_mexicanus
FBgn0050342	Prp38	57	76.596	ENSBTAG00000002720	PRPF38A	67	75.635	Bos_taurus
FBgn0050342	Prp38	57	69.149	WBGene00008380	prp-38	66	64.455	Caenorhabditis_elegans
FBgn0050342	Prp38	57	76.596	ENSCJAG00000021594	PRPF38A	66	75.635	Callithrix_jacchus
FBgn0050342	Prp38	57	76.596	ENSCAFG00000003740	PRPF38A	63	75.635	Canis_familiaris
FBgn0050342	Prp38	57	76.596	ENSCAFG00020010939	PRPF38A	63	75.635	Canis_lupus_dingo
FBgn0050342	Prp38	57	76.596	ENSCHIG00000024730	PRPF38A	63	75.635	Capra_hircus
FBgn0050342	Prp38	57	76.596	ENSTSYG00000009868	-	63	75.635	Carlito_syrichta
FBgn0050342	Prp38	57	76.596	ENSCPOG00000005079	PRPF38A	64	75.635	Cavia_porcellus
FBgn0050342	Prp38	57	47.090	ENSCATG00000044190	-	61	46.701	Cercocebus_atys
FBgn0050342	Prp38	57	76.596	ENSCATG00000032296	PRPF38A	63	75.635	Cercocebus_atys
FBgn0050342	Prp38	57	76.596	ENSCLAG00000005816	PRPF38A	63	75.635	Chinchilla_lanigera
FBgn0050342	Prp38	57	75.532	ENSCPBG00000014791	PRPF38A	63	74.619	Chrysemys_picta_bellii
FBgn0050342	Prp38	94	54.194	ENSCSAVG00000009580	-	89	52.843	Ciona_savignyi
FBgn0050342	Prp38	57	76.596	ENSCANG00000032608	PRPF38A	66	75.635	Colobus_angolensis_palliatus
FBgn0050342	Prp38	57	67.021	ENSCGRG00001002557	-	70	63.333	Cricetulus_griseus_chok1gshd
FBgn0050342	Prp38	57	76.596	ENSCGRG00001018502	-	63	75.635	Cricetulus_griseus_chok1gshd
FBgn0050342	Prp38	57	76.596	ENSCGRG00000014868	Prpf38a	63	75.635	Cricetulus_griseus_crigri
FBgn0050342	Prp38	90	52.027	ENSCSEG00000001269	prpf38a	70	69.268	Cynoglossus_semilaevis
FBgn0050342	Prp38	57	75.532	ENSCVAG00000012305	prpf38a	65	73.134	Cyprinodon_variegatus
FBgn0050342	Prp38	57	74.468	ENSDARG00000039213	prpf38a	65	71.707	Danio_rerio
FBgn0050342	Prp38	57	76.596	ENSDNOG00000042326	PRPF38A	64	75.635	Dasypus_novemcinctus
FBgn0050342	Prp38	55	75.410	ENSDORG00000023691	-	72	71.220	Dipodomys_ordii
FBgn0050342	Prp38	57	60.638	ENSDORG00000023857	-	57	60.406	Dipodomys_ordii
FBgn0050342	Prp38	55	75.410	ENSDORG00000025371	-	72	71.220	Dipodomys_ordii
FBgn0050342	Prp38	57	74.074	ENSEBUG00000012588	prpf38a	66	70.874	Eptatretus_burgeri
FBgn0050342	Prp38	57	76.596	ENSEASG00005014427	PRPF38A	63	75.635	Equus_asinus_asinus
FBgn0050342	Prp38	57	76.596	ENSECAG00000022628	PRPF38A	63	75.635	Equus_caballus
FBgn0050342	Prp38	57	73.404	ENSELUG00000021094	prpf38a	73	68.421	Esox_lucius
FBgn0050342	Prp38	57	76.596	ENSFCAG00000002518	PRPF38A	63	75.635	Felis_catus
FBgn0050342	Prp38	57	71.809	ENSFALG00000003612	-	66	71.066	Ficedula_albicollis
FBgn0050342	Prp38	57	76.596	ENSFDAG00000011287	PRPF38A	64	75.635	Fukomys_damarensis
FBgn0050342	Prp38	57	75.000	ENSFHEG00000014317	prpf38a	68	72.139	Fundulus_heteroclitus
FBgn0050342	Prp38	50	77.711	ENSGMOG00000011384	prpf38a	54	77.711	Gadus_morhua
FBgn0050342	Prp38	57	75.532	ENSGALG00000010627	PRPF38A	63	74.619	Gallus_gallus
FBgn0050342	Prp38	57	76.064	ENSGAFG00000012422	prpf38a	65	73.632	Gambusia_affinis
FBgn0050342	Prp38	57	72.872	ENSGACG00000005423	prpf38a	65	71.144	Gasterosteus_aculeatus
FBgn0050342	Prp38	57	75.532	ENSGAGG00000020547	PRPF38A	63	74.619	Gopherus_agassizii
FBgn0050342	Prp38	57	76.596	ENSGGOG00000003940	PRPF38A	63	75.635	Gorilla_gorilla
FBgn0050342	Prp38	57	73.016	ENSHBUG00000020572	prpf38a	87	69.903	Haplochromis_burtoni
FBgn0050342	Prp38	57	76.596	ENSHGLG00000000475	PRPF38A	63	75.635	Heterocephalus_glaber_female
FBgn0050342	Prp38	58	65.263	ENSHGLG00000007918	-	65	64.179	Heterocephalus_glaber_female
FBgn0050342	Prp38	57	76.596	ENSHGLG00100008935	PRPF38A	63	75.635	Heterocephalus_glaber_male
FBgn0050342	Prp38	58	65.263	ENSHGLG00100003928	-	65	64.179	Heterocephalus_glaber_male
FBgn0050342	Prp38	55	72.527	ENSHCOG00000020781	prpf38a	63	70.149	Hippocampus_comes
FBgn0050342	Prp38	57	74.074	ENSIPUG00000005757	prpf38a	69	71.642	Ictalurus_punctatus
FBgn0050342	Prp38	57	76.596	ENSSTOG00000015610	PRPF38A	63	75.635	Ictidomys_tridecemlineatus
FBgn0050342	Prp38	57	76.064	ENSJJAG00000015811	Prpf38a	63	75.127	Jaculus_jaculus
FBgn0050342	Prp38	57	75.000	ENSKMAG00000006588	prpf38a	65	72.637	Kryptolebias_marmoratus
FBgn0050342	Prp38	57	72.487	ENSLBEG00000020585	prpf38a	66	69.268	Labrus_bergylta
FBgn0050342	Prp38	57	73.404	ENSLACG00000011495	PRPF38A	63	72.081	Latimeria_chalumnae
FBgn0050342	Prp38	57	75.132	ENSLOCG00000006262	prpf38a	68	69.668	Lepisosteus_oculatus
FBgn0050342	Prp38	57	76.596	ENSLAFG00000025862	PRPF38A	63	75.635	Loxodonta_africana
FBgn0050342	Prp38	57	76.596	ENSMFAG00000039449	PRPF38A	66	75.635	Macaca_fascicularis
FBgn0050342	Prp38	57	47.619	ENSMNEG00000040242	-	61	47.208	Macaca_nemestrina
FBgn0050342	Prp38	57	76.596	ENSMNEG00000031221	PRPF38A	63	75.635	Macaca_nemestrina
FBgn0050342	Prp38	57	76.596	ENSMLEG00000041105	PRPF38A	63	75.635	Mandrillus_leucophaeus
FBgn0050342	Prp38	57	74.468	ENSMAMG00000015431	prpf38a	94	56.507	Mastacembelus_armatus
FBgn0050342	Prp38	57	75.532	ENSMGAG00000011176	PRPF38A	66	74.619	Meleagris_gallopavo
FBgn0050342	Prp38	69	60.163	ENSMAUG00000018029	-	93	60.976	Mesocricetus_auratus
FBgn0050342	Prp38	57	76.596	ENSMICG00000014193	PRPF38A	63	75.635	Microcebus_murinus
FBgn0050342	Prp38	57	76.596	ENSMOCG00000013080	Prpf38a	63	75.635	Microtus_ochrogaster
FBgn0050342	Prp38	57	73.936	ENSMMOG00000016972	prpf38a	74	69.668	Mola_mola
FBgn0050342	Prp38	57	76.596	ENSMODG00000000644	PRPF38A	64	74.627	Monodelphis_domestica
FBgn0050342	Prp38	57	73.404	ENSMALG00000019363	prpf38a	64	70.732	Monopterus_albus
FBgn0050342	Prp38	57	75.000	MGP_CAROLIEiJ_G0026269	Prpf38a	63	74.112	Mus_caroli
FBgn0050342	Prp38	57	75.000	ENSMUSG00000063800	Prpf38a	63	74.112	Mus_musculus
FBgn0050342	Prp38	57	75.000	MGP_PahariEiJ_G0028602	Prpf38a	63	74.112	Mus_pahari
FBgn0050342	Prp38	57	75.000	MGP_SPRETEiJ_G0027238	Prpf38a	98	73.737	Mus_spretus
FBgn0050342	Prp38	57	76.596	ENSMPUG00000006896	PRPF38A	63	75.635	Mustela_putorius_furo
FBgn0050342	Prp38	57	76.596	ENSNGAG00000011884	Prpf38a	64	75.635	Nannospalax_galili
FBgn0050342	Prp38	57	71.809	ENSNBRG00000004013	prpf38a	64	69.652	Neolamprologus_brichardi
FBgn0050342	Prp38	50	76.364	ENSNLEG00000017999	PRPF38A	56	75.287	Nomascus_leucogenys
FBgn0050342	Prp38	58	50.526	ENSNLEG00000012592	-	60	50.000	Nomascus_leucogenys
FBgn0050342	Prp38	57	42.021	ENSNLEG00000033398	-	52	42.640	Nomascus_leucogenys
FBgn0050342	Prp38	58	76.842	ENSMEUG00000003860	PRPF38A	61	76.842	Notamacropus_eugenii
FBgn0050342	Prp38	57	76.596	ENSOPRG00000008985	PRPF38A	83	75.253	Ochotona_princeps
FBgn0050342	Prp38	57	76.596	ENSODEG00000005869	PRPF38A	63	75.635	Octodon_degus
FBgn0050342	Prp38	57	35.789	ENSOANG00000009541	-	63	36.683	Ornithorhynchus_anatinus
FBgn0050342	Prp38	57	76.596	ENSOCUG00000000963	PRPF38A	63	75.635	Oryctolagus_cuniculus
FBgn0050342	Prp38	57	75.532	ENSORLG00000013485	prpf38a	97	55.814	Oryzias_latipes
FBgn0050342	Prp38	57	75.532	ENSORLG00020002130	prpf38a	73	72.683	Oryzias_latipes_hni
FBgn0050342	Prp38	57	75.532	ENSORLG00015021393	prpf38a	71	72.330	Oryzias_latipes_hsok
FBgn0050342	Prp38	57	75.000	ENSOMEG00000016333	prpf38a	66	72.195	Oryzias_melastigma
FBgn0050342	Prp38	57	76.596	ENSOGAG00000005423	PRPF38A	63	75.635	Otolemur_garnettii
FBgn0050342	Prp38	57	76.596	ENSOARG00000005373	PRPF38A	63	75.635	Ovis_aries
FBgn0050342	Prp38	57	76.596	ENSPPAG00000030905	PRPF38A	63	75.635	Pan_paniscus
FBgn0050342	Prp38	53	65.517	ENSPPAG00000033867	-	60	60.406	Pan_paniscus
FBgn0050342	Prp38	57	76.596	ENSPPRG00000013268	PRPF38A	63	75.635	Panthera_pardus
FBgn0050342	Prp38	57	76.596	ENSPTIG00000015419	PRPF38A	63	75.635	Panthera_tigris_altaica
FBgn0050342	Prp38	57	76.596	ENSPTRG00000000739	PRPF38A	66	75.635	Pan_troglodytes
FBgn0050342	Prp38	57	76.596	ENSPANG00000015483	PRPF38A	63	75.635	Papio_anubis
FBgn0050342	Prp38	57	72.872	ENSPKIG00000011439	prpf38a	68	68.720	Paramormyrops_kingsleyae
FBgn0050342	Prp38	57	76.064	ENSPSIG00000017487	PRPF38A	63	75.127	Pelodiscus_sinensis
FBgn0050342	Prp38	57	75.000	ENSPMGG00000021352	prpf38a	69	73.134	Periophthalmus_magnuspinnatus
FBgn0050342	Prp38	57	76.596	ENSPEMG00000023277	-	63	75.635	Peromyscus_maniculatus_bairdii
FBgn0050342	Prp38	58	71.053	ENSPEMG00000011212	-	63	69.154	Peromyscus_maniculatus_bairdii
FBgn0050342	Prp38	57	76.596	ENSPCIG00000022369	-	64	74.627	Phascolarctos_cinereus
FBgn0050342	Prp38	57	76.064	ENSPFOG00000004248	prpf38a	65	73.632	Poecilia_formosa
FBgn0050342	Prp38	57	76.064	ENSPLAG00000010328	prpf38a	65	73.632	Poecilia_latipinna
FBgn0050342	Prp38	57	76.064	ENSPMEG00000011804	prpf38a	65	73.632	Poecilia_mexicana
FBgn0050342	Prp38	57	76.064	ENSPREG00000002835	prpf38a	63	73.171	Poecilia_reticulata
FBgn0050342	Prp38	57	66.321	ENSPPYG00000001348	PRPF38A	63	65.842	Pongo_abelii
FBgn0050342	Prp38	57	76.064	ENSPCAG00000013328	PRPF38A	63	75.127	Procavia_capensis
FBgn0050342	Prp38	57	65.426	ENSPCOG00000020709	-	67	64.975	Propithecus_coquereli
FBgn0050342	Prp38	57	76.596	ENSPCOG00000016387	-	63	75.635	Propithecus_coquereli
FBgn0050342	Prp38	57	76.596	ENSPVAG00000009803	PRPF38A	63	75.635	Pteropus_vampyrus
FBgn0050342	Prp38	57	74.468	ENSPNAG00000010399	prpf38a	67	69.668	Pygocentrus_nattereri
FBgn0050342	Prp38	57	76.064	ENSRNOG00000009451	Prpf38a	63	75.127	Rattus_norvegicus
FBgn0050342	Prp38	57	76.596	ENSRBIG00000036442	PRPF38A	66	75.635	Rhinopithecus_bieti
FBgn0050342	Prp38	58	65.263	ENSRROG00000040003	-	64	64.141	Rhinopithecus_roxellana
FBgn0050342	Prp38	57	76.596	ENSRROG00000032788	PRPF38A	63	75.635	Rhinopithecus_roxellana
FBgn0050342	Prp38	57	76.596	ENSSBOG00000019515	PRPF38A	63	75.635	Saimiri_boliviensis_boliviensis
FBgn0050342	Prp38	58	72.105	ENSSHAG00000006029	-	67	70.647	Sarcophilus_harrisii
FBgn0050342	Prp38	57	73.936	ENSSFOG00015013572	prpf38a	66	70.732	Scleropages_formosus
FBgn0050342	Prp38	57	74.468	ENSSMAG00000015379	prpf38a	68	70.142	Scophthalmus_maximus
FBgn0050342	Prp38	57	50.000	ENSSARG00000014458	PRPF38A	63	50.254	Sorex_araneus
FBgn0050342	Prp38	57	74.468	ENSSPUG00000013259	PRPF38A	64	72.637	Sphenodon_punctatus
FBgn0050342	Prp38	57	58.511	ENSSPAG00000010449	prpf38a	64	55.924	Stegastes_partitus
FBgn0050342	Prp38	57	76.596	ENSSSCG00000028288	PRPF38A	63	75.635	Sus_scrofa
FBgn0050342	Prp38	57	70.213	ENSTGUG00000008995	PRPF38A	63	69.543	Taeniopygia_guttata
FBgn0050342	Prp38	57	74.468	ENSTRUG00000003374	prpf38a	64	70.142	Takifugu_rubripes
FBgn0050342	Prp38	57	72.632	ENSTNIG00000005533	prpf38a	93	55.782	Tetraodon_nigroviridis
FBgn0050342	Prp38	57	76.596	ENSTBEG00000000725	PRPF38A	63	75.635	Tupaia_belangeri
FBgn0050342	Prp38	57	76.596	ENSTTRG00000016139	PRPF38A	63	75.635	Tursiops_truncatus
FBgn0050342	Prp38	57	76.596	ENSUAMG00000000625	PRPF38A	63	75.635	Ursus_americanus
FBgn0050342	Prp38	57	76.596	ENSUMAG00000022674	PRPF38A	63	75.635	Ursus_maritimus
FBgn0050342	Prp38	57	76.596	ENSVPAG00000000907	PRPF38A	65	75.248	Vicugna_pacos
FBgn0050342	Prp38	57	76.596	ENSVVUG00000004475	PRPF38A	63	75.635	Vulpes_vulpes
FBgn0050342	Prp38	57	74.468	ENSXETG00000008060	prpf38a	64	73.134	Xenopus_tropicalis
FBgn0050342	Prp38	57	74.211	ENSXCOG00000007393	prpf38a	67	71.921	Xiphophorus_couchianus
FBgn0050342	Prp38	57	76.064	ENSXMAG00000026143	prpf38a	65	73.632	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	18765666.	IMP	Process
GO:0005515	protein binding	18765666.	IPI	Function
GO:0010389	regulation of G2/M transition of mitotic cell cycle	18765666.	IMP	Process
GO:0032991	protein-containing complex	18765666.	IPI	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071011	precatalytic spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component