EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
FBgn0051184 (Gene tree)
Gene ID
42842
Gene Symbol
LSm3
Alias
-
Full Name
Like Sm 3
Gene Type
protein_coding
Species
Drosophila_melanogaster
Status
putative
Strand
Plus strand
Length
756 bases
Position
chr3R:23996262-23997017
Accession
FBgn0051184
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
FBpp0083893LSMPF01423.221.3e-2011
FBpp0289873LSMPF01423.221.3e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
FBtr0084505-643-FBpp0083893103 (aa)-Q8IGW7
FBtr0300648-491-FBpp0289873103 (aa)-Q8IMX8
Gene Model
Click here to download FBgn0051184's gene model file
Protein-Protein Interaction (PPI)

Clik here to download FBgn0051184's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
FBgn0051184LSm37735.366FBgn0261789SmD26937.805
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
FBgn0051184LSm310076.699ENSG00000170860LSM310076.699Homo_sapiens
FBgn0051184LSm310078.641ENSAPOG00000018947lsm310078.641Acanthochromis_polyacanthus
FBgn0051184LSm310076.699ENSAMEG00000009405LSM310076.699Ailuropoda_melanoleuca
FBgn0051184LSm310078.641ENSACIG00000004574lsm37178.641Amphilophus_citrinellus
FBgn0051184LSm310078.641ENSAOCG00000007658lsm310078.641Amphiprion_ocellaris
FBgn0051184LSm310078.641ENSAPEG00000018621lsm310078.641Amphiprion_percula
FBgn0051184LSm310078.641ENSATEG00000005153lsm310078.641Anabas_testudineus
FBgn0051184LSm39278.947ENSAPLG00000014499LSM310078.947Anas_platyrhynchos
FBgn0051184LSm310077.670ENSACAG00000013503LSM310077.670Anolis_carolinensis
FBgn0051184LSm310076.699ENSANAG00000034627LSM310076.699Aotus_nancymaae
FBgn0051184LSm310074.757ENSANAG00000002903-10074.757Aotus_nancymaae
FBgn0051184LSm38684.270ENSACLG00000001726-8684.270Astatotilapia_calliptera
FBgn0051184LSm310079.612ENSAMXG00000041214lsm310079.612Astyanax_mexicanus
FBgn0051184LSm39278.947ENSBTAG00000007363LSM39978.947Bos_taurus
FBgn0051184LSm38675.281WBGene00003077lsm-38775.281Caenorhabditis_elegans
FBgn0051184LSm310074.757ENSCAFG00000001760LSM310074.757Canis_familiaris
FBgn0051184LSm310074.757ENSCAFG00020021584-10074.757Canis_lupus_dingo
FBgn0051184LSm310073.786ENSCAFG00020026452-10073.786Canis_lupus_dingo
FBgn0051184LSm310074.757ENSCAFG00020017266-10074.757Canis_lupus_dingo
FBgn0051184LSm310069.444ENSCAFG00020020950-10069.444Canis_lupus_dingo
FBgn0051184LSm310068.932ENSCAFG00020016680-10068.932Canis_lupus_dingo
FBgn0051184LSm310076.699ENSCHIG00000024650LSM310076.699Capra_hircus
FBgn0051184LSm310077.670ENSTSYG00000005204-10077.670Carlito_syrichta
FBgn0051184LSm39961.765ENSTSYG00000028528-9961.765Carlito_syrichta
FBgn0051184LSm39278.947ENSCAPG00000015760LSM39978.947Cavia_aperea
FBgn0051184LSm310076.699ENSCPOG00000034071LSM310076.699Cavia_porcellus
FBgn0051184LSm310076.699ENSCCAG00000019503-10076.699Cebus_capucinus
FBgn0051184LSm310060.194ENSCCAG00000032763-10060.194Cebus_capucinus
FBgn0051184LSm310076.699ENSCCAG00000036499-10076.699Cebus_capucinus
FBgn0051184LSm39959.804ENSCATG00000031630-9959.804Cercocebus_atys
FBgn0051184LSm310076.699ENSCATG00000039421LSM310076.699Cercocebus_atys
FBgn0051184LSm310076.699ENSCLAG00000015997LSM310076.699Chinchilla_lanigera
FBgn0051184LSm310071.845ENSCSAG00000019525-10071.845Chlorocebus_sabaeus
FBgn0051184LSm310077.670ENSCPBG00000014531LSM310077.670Chrysemys_picta_bellii
FBgn0051184LSm310080.769ENSCSAVG00000009542-10080.769Ciona_savignyi
FBgn0051184LSm310075.728ENSCANG00000018782-10075.728Colobus_angolensis_palliatus
FBgn0051184LSm310075.728ENSCANG00000038037-10075.728Colobus_angolensis_palliatus
FBgn0051184LSm310076.699ENSCANG00000033944-10076.699Colobus_angolensis_palliatus
FBgn0051184LSm310076.699ENSCGRG00001017598Lsm310076.699Cricetulus_griseus_chok1gshd
FBgn0051184LSm39864.356ENSCGRG00001011396-10064.356Cricetulus_griseus_chok1gshd
FBgn0051184LSm37871.605ENSCGRG00001008639-8771.605Cricetulus_griseus_chok1gshd
FBgn0051184LSm39167.021ENSCGRG00000012129-9967.021Cricetulus_griseus_crigri
FBgn0051184LSm310076.699ENSCGRG00000016159Lsm310076.699Cricetulus_griseus_crigri
FBgn0051184LSm310078.641ENSCSEG00000015071lsm37778.641Cynoglossus_semilaevis
FBgn0051184LSm310078.641ENSCVAG00000006933lsm310078.641Cyprinodon_variegatus
FBgn0051184LSm310078.641ENSDARG00000089663lsm310078.641Danio_rerio
FBgn0051184LSm310076.699ENSDNOG00000030808LSM310076.699Dasypus_novemcinctus
FBgn0051184LSm310060.194ENSDORG00000024490-10060.194Dipodomys_ordii
FBgn0051184LSm310076.699ENSDORG00000006894-10076.699Dipodomys_ordii
FBgn0051184LSm310076.699ENSETEG00000016207LSM310076.699Echinops_telfairi
FBgn0051184LSm38683.146ENSEBUG00000004943lsm38783.146Eptatretus_burgeri
FBgn0051184LSm310076.699ENSEASG00005015443LSM310076.699Equus_asinus_asinus
FBgn0051184LSm310076.699ENSECAG00000007803LSM310076.699Equus_caballus
FBgn0051184LSm310078.641ENSELUG00000018922lsm310078.641Esox_lucius
FBgn0051184LSm310058.252ENSFCAG00000044344-10058.252Felis_catus
FBgn0051184LSm310076.699ENSFCAG00000038453LSM310076.699Felis_catus
FBgn0051184LSm310077.670ENSFALG00000012644LSM310077.670Ficedula_albicollis
FBgn0051184LSm310076.699ENSFDAG00000011470LSM310076.699Fukomys_damarensis
FBgn0051184LSm310078.641ENSFHEG00000000876lsm310078.641Fundulus_heteroclitus
FBgn0051184LSm39278.947ENSGMOG00000011024lsm310078.947Gadus_morhua
FBgn0051184LSm310078.641ENSGAFG00000013965lsm310078.641Gambusia_affinis
FBgn0051184LSm310078.641ENSGACG00000003488lsm310078.641Gasterosteus_aculeatus
FBgn0051184LSm310077.670ENSGAGG00000025707LSM310077.670Gopherus_agassizii
FBgn0051184LSm310076.699ENSGGOG00000010006LSM310076.699Gorilla_gorilla
FBgn0051184LSm310078.641ENSHBUG00000022399lsm310078.641Haplochromis_burtoni
FBgn0051184LSm310076.699ENSHGLG00000000651LSM310076.699Heterocephalus_glaber_female
FBgn0051184LSm310061.165ENSHGLG00000015564-10061.165Heterocephalus_glaber_female
FBgn0051184LSm310076.699ENSHGLG00100011343LSM310076.699Heterocephalus_glaber_male
FBgn0051184LSm310061.165ENSHGLG00100010658-10061.165Heterocephalus_glaber_male
FBgn0051184LSm310078.641ENSHCOG00000013481lsm310078.641Hippocampus_comes
FBgn0051184LSm310077.670ENSIPUG00000009207lsm310077.670Ictalurus_punctatus
FBgn0051184LSm310076.699ENSSTOG00000006842LSM310076.699Ictidomys_tridecemlineatus
FBgn0051184LSm310076.699ENSJJAG00000017351Lsm310076.699Jaculus_jaculus
FBgn0051184LSm39956.863ENSJJAG00000018311-10056.863Jaculus_jaculus
FBgn0051184LSm310071.845ENSJJAG00000012797-10071.845Jaculus_jaculus
FBgn0051184LSm310078.641ENSKMAG00000015182lsm310078.641Kryptolebias_marmoratus
FBgn0051184LSm38684.270ENSLBEG00000021292lsm39184.270Labrus_bergylta
FBgn0051184LSm310078.641ENSLOCG00000013560lsm310078.641Lepisosteus_oculatus
FBgn0051184LSm310076.699ENSLAFG00000023308LSM310076.699Loxodonta_africana
FBgn0051184LSm310076.699ENSMFAG00000003185LSM310076.699Macaca_fascicularis
FBgn0051184LSm39163.830ENSMMUG00000043596-9163.830Macaca_mulatta
FBgn0051184LSm310076.699ENSMMUG00000023126LSM310076.699Macaca_mulatta
FBgn0051184LSm39162.766ENSMMUG00000002294-9062.766Macaca_mulatta
FBgn0051184LSm310076.699ENSMNEG00000043632LSM310076.699Macaca_nemestrina
FBgn0051184LSm39961.765ENSMNEG00000037686-9961.765Macaca_nemestrina
FBgn0051184LSm310076.699ENSMLEG00000036162LSM310076.699Mandrillus_leucophaeus
FBgn0051184LSm310078.641ENSMAMG00000012807lsm310078.641Mastacembelus_armatus
FBgn0051184LSm310078.641ENSMZEG00005016682lsm37378.641Maylandia_zebra
FBgn0051184LSm39278.947ENSMGAG00000007776LSM39978.947Meleagris_gallopavo
FBgn0051184LSm310075.728ENSMICG00000032361-10075.728Microcebus_murinus
FBgn0051184LSm310065.049ENSMICG00000027821-10065.049Microcebus_murinus
FBgn0051184LSm310076.699ENSMOCG00000014269Lsm310076.699Microtus_ochrogaster
FBgn0051184LSm310078.641ENSMMOG00000020715lsm310078.641Mola_mola
FBgn0051184LSm310076.699ENSMODG00000007275LSM310076.699Monodelphis_domestica
FBgn0051184LSm310078.641ENSMALG00000006485lsm310078.641Monopterus_albus
FBgn0051184LSm310076.699ENSMUSG00000034192Lsm310076.699Mus_musculus
FBgn0051184LSm310076.699MGP_PahariEiJ_G0022402Lsm310076.699Mus_pahari
FBgn0051184LSm310076.699MGP_SPRETEiJ_G0029681Lsm310076.699Mus_spretus
FBgn0051184LSm38373.256ENSMPUG00000017256-10073.256Mustela_putorius_furo
FBgn0051184LSm39771.000ENSMPUG00000019120-9771.000Mustela_putorius_furo
FBgn0051184LSm310071.845ENSMLUG00000024700-10071.845Myotis_lucifugus
FBgn0051184LSm310076.699ENSMLUG00000010677LSM310076.699Myotis_lucifugus
FBgn0051184LSm310076.699ENSNGAG00000022450Lsm310076.699Nannospalax_galili
FBgn0051184LSm310058.252ENSNGAG00000013716-10058.252Nannospalax_galili
FBgn0051184LSm38666.292ENSNGAG00000010207-9266.292Nannospalax_galili
FBgn0051184LSm310078.641ENSNBRG00000014318lsm310078.641Neolamprologus_brichardi
FBgn0051184LSm310076.699ENSNLEG00000005079LSM310076.699Nomascus_leucogenys
FBgn0051184LSm310069.903ENSNLEG00000030229-10069.903Nomascus_leucogenys
FBgn0051184LSm310074.757ENSODEG00000019158-10074.757Octodon_degus
FBgn0051184LSm310070.874ENSODEG00000019403-10070.874Octodon_degus
FBgn0051184LSm310076.699ENSODEG00000001726LSM310076.699Octodon_degus
FBgn0051184LSm310075.728ENSODEG00000019740-10075.728Octodon_degus
FBgn0051184LSm310078.641ENSONIG00000000370lsm310078.641Oreochromis_niloticus
FBgn0051184LSm310078.641ENSONIG00000021369-10078.641Oreochromis_niloticus
FBgn0051184LSm310076.699ENSOANG00000012273LSM310076.699Ornithorhynchus_anatinus
FBgn0051184LSm310076.699ENSOCUG00000027653-10076.699Oryctolagus_cuniculus
FBgn0051184LSm310075.728ENSOCUG00000011088-10075.728Oryctolagus_cuniculus
FBgn0051184LSm310078.641ENSORLG00000025900lsm310078.641Oryzias_latipes
FBgn0051184LSm310078.641ENSORLG00020007125lsm310078.641Oryzias_latipes_hni
FBgn0051184LSm310078.641ENSORLG00015002944lsm310078.641Oryzias_latipes_hsok
FBgn0051184LSm310078.641ENSOMEG00000001915lsm310078.641Oryzias_melastigma
FBgn0051184LSm39277.895ENSOGAG00000028858-9777.895Otolemur_garnettii
FBgn0051184LSm310076.699ENSOGAG00000007659-10076.699Otolemur_garnettii
FBgn0051184LSm310068.932ENSOGAG00000033051-10068.932Otolemur_garnettii
FBgn0051184LSm310076.699ENSOARG00000000600LSM310076.699Ovis_aries
FBgn0051184LSm310076.699ENSPPAG00000034074LSM310076.699Pan_paniscus
FBgn0051184LSm310075.728ENSPPRG00000020953-10075.728Panthera_pardus
FBgn0051184LSm39972.549ENSPPRG00000010610-8972.549Panthera_pardus
FBgn0051184LSm310076.699ENSPPRG00000012912-10076.699Panthera_pardus
FBgn0051184LSm310076.699ENSPTIG00000003463-10076.699Panthera_tigris_altaica
FBgn0051184LSm310076.699ENSPTIG00000013072-10076.699Panthera_tigris_altaica
FBgn0051184LSm310076.699ENSPTRG00000014650LSM310076.699Pan_troglodytes
FBgn0051184LSm310076.699ENSPANG00000009378LSM310076.699Papio_anubis
FBgn0051184LSm310060.194ENSPANG00000032192-10060.194Papio_anubis
FBgn0051184LSm310078.641ENSPKIG00000008037lsm39178.641Paramormyrops_kingsleyae
FBgn0051184LSm310077.670ENSPSIG00000015720LSM310077.670Pelodiscus_sinensis
FBgn0051184LSm38683.146ENSPMGG00000012103lsm39083.146Periophthalmus_magnuspinnatus
FBgn0051184LSm310076.699ENSPEMG00000015797Lsm310076.699Peromyscus_maniculatus_bairdii
FBgn0051184LSm310064.078ENSPEMG00000020213-10064.078Peromyscus_maniculatus_bairdii
FBgn0051184LSm310078.641ENSPFOG00000008372lsm310078.641Poecilia_formosa
FBgn0051184LSm310078.641ENSPLAG00000000563lsm310078.641Poecilia_latipinna
FBgn0051184LSm310078.641ENSPMEG00000022052lsm310078.641Poecilia_mexicana
FBgn0051184LSm310078.641ENSPREG00000022485lsm310078.641Poecilia_reticulata
FBgn0051184LSm310076.699ENSPPYG00000013402LSM310076.699Pongo_abelii
FBgn0051184LSm310076.699ENSPCAG00000017077LSM310076.699Procavia_capensis
FBgn0051184LSm310075.728ENSPCOG00000016217-10075.728Propithecus_coquereli
FBgn0051184LSm38162.651ENSPCOG00000014435-8262.651Propithecus_coquereli
FBgn0051184LSm310076.699ENSPVAG00000016795LSM310076.699Pteropus_vampyrus
FBgn0051184LSm310078.641ENSPNYG00000009552lsm37378.641Pundamilia_nyererei
FBgn0051184LSm310079.612ENSPNAG00000023467lsm310079.612Pygocentrus_nattereri
FBgn0051184LSm310076.699ENSRNOG00000008733Lsm310076.699Rattus_norvegicus
FBgn0051184LSm310062.136ENSRBIG00000043783-10062.136Rhinopithecus_bieti
FBgn0051184LSm310076.699ENSRBIG00000034399LSM310076.699Rhinopithecus_bieti
FBgn0051184LSm310063.107ENSRROG00000039868-10063.107Rhinopithecus_roxellana
FBgn0051184LSm310062.136ENSRROG00000044056-10062.136Rhinopithecus_roxellana
FBgn0051184LSm310076.699ENSRROG00000033276-10076.699Rhinopithecus_roxellana
FBgn0051184LSm310066.990ENSRROG00000044047-10066.990Rhinopithecus_roxellana
FBgn0051184LSm310076.699ENSSBOG00000024310LSM310076.699Saimiri_boliviensis_boliviensis
FBgn0051184LSm310079.612ENSSFOG00015007071lsm310079.612Scleropages_formosus
FBgn0051184LSm310078.641ENSSMAG00000001818lsm310078.641Scophthalmus_maximus
FBgn0051184LSm310078.641ENSSDUG00000006040lsm310078.641Seriola_dumerili
FBgn0051184LSm310078.641ENSSLDG00000006399lsm310078.641Seriola_lalandi_dorsalis
FBgn0051184LSm35681.034ENSSARG00000005275-10081.034Sorex_araneus
FBgn0051184LSm39278.947ENSSPUG00000017047-9978.947Sphenodon_punctatus
FBgn0051184LSm310069.903ENSSPUG00000005394LSM310069.903Sphenodon_punctatus
FBgn0051184LSm310066.990ENSSPAG00000000934lsm310066.990Stegastes_partitus
FBgn0051184LSm39555.102ENSSSCG00000023718-9955.102Sus_scrofa
FBgn0051184LSm310076.699ENSSSCG00000011601LSM310076.699Sus_scrofa
FBgn0051184LSm310077.670ENSTGUG00000008327LSM310077.670Taeniopygia_guttata
FBgn0051184LSm310078.641ENSTRUG00000023175lsm310078.641Takifugu_rubripes
FBgn0051184LSm310078.641ENSTNIG00000005589lsm310078.641Tetraodon_nigroviridis
FBgn0051184LSm310068.932ENSTBEG00000001050-9968.932Tupaia_belangeri
FBgn0051184LSm310076.699ENSTTRG00000011197LSM310076.699Tursiops_truncatus
FBgn0051184LSm310076.699ENSUAMG00000017250-10076.699Ursus_americanus
FBgn0051184LSm310076.699ENSUMAG00000015905LSM310076.699Ursus_maritimus
FBgn0051184LSm39278.947ENSVPAG00000010709LSM310078.947Vicugna_pacos
FBgn0051184LSm310068.932ENSVVUG00000024228-10068.932Vulpes_vulpes
FBgn0051184LSm310071.845ENSVVUG00000006481-10071.845Vulpes_vulpes
FBgn0051184LSm310071.845ENSVVUG00000005684-10071.845Vulpes_vulpes
FBgn0051184LSm310072.816ENSVVUG00000007332-9172.816Vulpes_vulpes
FBgn0051184LSm310073.786ENSVVUG00000029294-10073.786Vulpes_vulpes
FBgn0051184LSm310077.670ENSXETG00000011534lsm310077.670Xenopus_tropicalis
FBgn0051184LSm310078.641ENSXCOG00000017432LSM310078.641Xiphophorus_couchianus
FBgn0051184LSm310078.641ENSXMAG00000009151lsm310078.641Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome18981222.ICProcess
GO:0000398mRNA splicing, via spliceosome10908584.ISSProcess
GO:0000932P-body21873635.IBAComponent
GO:0000956nuclear-transcribed mRNA catabolic process-IEAProcess
GO:0003723RNA binding21873635.IBAFunction
GO:0005688U6 snRNP21873635.IBAComponent
GO:0005688U6 snRNP10908584.ISSComponent
GO:0033962cytoplasmic mRNA processing body assembly21873635.IBAProcess
GO:0033962cytoplasmic mRNA processing body assembly17403906.IMPProcess
GO:0046540U4/U6 x U5 tri-snRNP complex21873635.IBAComponent
GO:0071011precatalytic spliceosome18981222.HDAComponent
GO:0071013catalytic step 2 spliceosome18981222.HDAComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent
GO:1990726Lsm1-7-Pat1 complex21873635.IBAComponent

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