EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: FBgn0051716 (Gene tree)
Gene ID: 34416
Gene Symbol: Cnot4
Alias: -
Full Name: CCR4-NOT transcription complex subunit 4
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 6491 bases
Position: chr2L:10396716-10403206
Accession: FBgn0051716
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0079604	RRM_1	PF00076.22	3.7e-06	1	1
FBpp0293056	RRM_1	PF00076.22	3.7e-06	1	1
FBpp0079599	RRM_1	PF00076.22	3.7e-06	1	1
FBpp0079600	RRM_1	PF00076.22	3.7e-06	1	1
FBpp0079601	RRM_1	PF00076.22	3.7e-06	1	1
FBpp0079602	RRM_1	PF00076.22	3.7e-06	1	1
FBpp0079603	RRM_1	PF00076.22	3.7e-06	1	1
FBpp0293055	RRM_1	PF00076.22	3.7e-06	1	1
FBpp0304029	RRM_1	PF00076.22	2.4e-05	1	1
FBpp0304027	RRM_1	PF00076.22	2.4e-05	1	1
FBpp0304028	RRM_1	PF00076.22	2.4e-05	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0080012	-	3554	-	FBpp0079602	1051 (aa)	-	Q9VKX1
FBtr0080014	-	3370	-	FBpp0079604	1047 (aa)	-	Q8IPB9
FBtr0080013	-	3644	-	FBpp0079603	1051 (aa)	-	Q9VKX1
FBtr0080009	-	3615	-	FBpp0079599	1051 (aa)	-	Q9VKX1
FBtr0331639	-	3612	-	FBpp0304029	1050 (aa)	-	M9PCL9
FBtr0331638	-	3972	-	FBpp0304028	1062 (aa)	-	M9PB92
FBtr0331637	-	3826	-	FBpp0304027	1054 (aa)	-	M9PFI0
FBtr0304112	-	3963	-	FBpp0293055	1059 (aa)	-	M9MRH8
FBtr0304113	-	3603	-	FBpp0293056	1047 (aa)	-	Q8IPB9
FBtr0080010	-	3552	-	FBpp0079600	1051 (aa)	-	Q9VKX1
FBtr0080011	-	3482	-	FBpp0079601	1051 (aa)	-	Q9VKX1

Gene Model

Click here to download FBgn0051716's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0051716's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004842	ubiquitin-protein transferase activity	21873635.	IBA	Function
GO:0004842	ubiquitin-protein transferase activity	-	ISS	Function
GO:0005737	cytoplasm	-	ISS	Component
GO:0008270	zinc ion binding	21912646.	ISM	Function
GO:0016567	protein ubiquitination	21873635.	IBA	Process
GO:0016567	protein ubiquitination	-	ISS	Process
GO:0030014	CCR4-NOT complex	21873635.	IBA	Component
GO:0046427	positive regulation of JAK-STAT cascade	20624926.	IMP	Process
GO:0046872	metal ion binding	-	IEA	Function