EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: FBgn0052062 (Gene tree)
Gene ID: 39198
Gene Symbol: Rbfox1
Alias: -
Full Name: RNA-binding Fox protein 1
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 112601 bases
Position: chr3L:10481412-10594012
Accession: FBgn0052062
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0305201	RRM_1	PF00076.22	1.1e-16	1	1
FBpp0112331	RRM_1	PF00076.22	1.3e-16	1	1
FBpp0293634	RRM_1	PF00076.22	1.6e-16	1	1
FBpp0112330	RRM_1	PF00076.22	1.6e-16	1	1
FBpp0293632	RRM_1	PF00076.22	1.7e-16	1	1
FBpp0293633	RRM_1	PF00076.22	1.8e-16	1	1
FBpp0293631	RRM_1	PF00076.22	1.8e-16	1	1
FBpp0293630	RRM_1	PF00076.22	1.8e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0113419	-	3413	-	FBpp0112331	763 (aa)	-	A0A1B1R4Q5
FBtr0113418	-	3508	-	FBpp0112330	865 (aa)	-	Q7YU08
FBtr0305093	-	6692	-	FBpp0293630	962 (aa)	-	M9NFQ7
FBtr0305094	-	3244	-	FBpp0293631	796 (aa)	-	A8JNQ4
FBtr0305095	-	6610	-	FBpp0293632	889 (aa)	-	A0A1B1R4Q5
FBtr0305096	-	6097	-	FBpp0293633	921 (aa)	-	M9NFQ7
FBtr0305097	-	3944	-	FBpp0293634	858 (aa)	-	M9ND74
FBtr0332985	-	5584	-	FBpp0305201	547 (aa)	-	A0A140HLF6

Gene Model

Click here to download FBgn0052062's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0052062's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0003730	mRNA 3'-UTR binding	26954550.	IDA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	20226779.26876166.26954550.	IDA	Component
GO:0005654	nucleoplasm	25294944.	HDA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	20724451.26954550.	IDA	Component
GO:0007399	nervous system development	21873635.	IBA	Process
GO:0007399	nervous system development	17376868.	IMP	Process
GO:0007474	imaginal disc-derived wing vein specification	20226779.	IMP	Process
GO:0007613	memory	26876166.	IMP	Process
GO:0008134	transcription factor binding	20226779.	IPI	Function
GO:0017148	negative regulation of translation	26954550.	IDA	Process
GO:0030706	germarium-derived oocyte differentiation	26954550.	IMP	Process
GO:0044212	transcription regulatory region DNA binding	20226779.	IDA	Function
GO:0045893	positive regulation of transcription, DNA-templated	20226779.	IMP	Process
GO:0048477	oogenesis	20724451.	IMP	Process