EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0052409 (Gene tree)
Gene ID: 318016
Gene Symbol: CG32409
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 1409 bases
Position: chr3L:5899528-5900936
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0076738	RRS1	PF04939.12	8.7e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0077030	-	1231	-	FBpp0076738	349 (aa)	-	A0APC8

Gene Model

Click here to download FBgn0052409's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0052409's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0052409	CG32409	92	44.582	ENSG00000179041	RRS1	88	42.609	Homo_sapiens
FBgn0052409	CG32409	89	46.203	ENSATEG00000011743	rrs1	95	45.429	Anabas_testudineus
FBgn0052409	CG32409	94	44.880	ENSANAG00000018116	RRS1	91	43.840	Aotus_nancymaae
FBgn0052409	CG32409	91	45.794	ENSAMXG00000037893	rrs1	86	45.058	Astyanax_mexicanus
FBgn0052409	CG32409	94	42.169	ENSBTAG00000016716	RRS1	88	40.290	Bos_taurus
FBgn0052409	CG32409	78	40.070	WBGene00007617	rrbs-1	81	40.070	Caenorhabditis_elegans
FBgn0052409	CG32409	94	43.976	ENSCJAG00000022034	RRS1	79	45.608	Callithrix_jacchus
FBgn0052409	CG32409	84	44.407	ENSCAFG00000007313	RRS1	79	44.407	Canis_familiaris
FBgn0052409	CG32409	84	44.407	ENSCAFG00020020365	-	79	44.407	Canis_lupus_dingo
FBgn0052409	CG32409	84	44.407	ENSCAFG00020016049	-	79	44.407	Canis_lupus_dingo
FBgn0052409	CG32409	92	42.462	ENSCHIG00000009141	RRS1	88	40.580	Capra_hircus
FBgn0052409	CG32409	84	45.791	ENSCPOG00000000647	RRS1	94	43.391	Cavia_porcellus
FBgn0052409	CG32409	94	44.578	ENSCCAG00000032186	RRS1	88	44.578	Cebus_capucinus
FBgn0052409	CG32409	92	44.582	ENSCATG00000016944	RRS1	88	42.609	Cercocebus_atys
FBgn0052409	CG32409	99	42.340	ENSCSAG00000018552	RRS1	88	42.319	Chlorocebus_sabaeus
FBgn0052409	CG32409	92	43.692	ENSCHOG00000002455	RRS1	88	41.739	Choloepus_hoffmanni
FBgn0052409	CG32409	90	37.730	ENSCPBG00000021374	RRS1	84	38.487	Chrysemys_picta_bellii
FBgn0052409	CG32409	89	41.875	ENSCING00000002177	-	89	43.434	Ciona_intestinalis
FBgn0052409	CG32409	89	43.168	ENSCSAVG00000011819	-	90	43.960	Ciona_savignyi
FBgn0052409	CG32409	94	44.713	ENSCANG00000012718	RRS1	88	42.609	Colobus_angolensis_palliatus
FBgn0052409	CG32409	95	44.611	ENSCGRG00001015575	-	83	45.424	Cricetulus_griseus_chok1gshd
FBgn0052409	CG32409	94	44.578	ENSCGRG00001002391	-	88	42.609	Cricetulus_griseus_chok1gshd
FBgn0052409	CG32409	84	42.568	ENSCSEG00000014750	rrs1	93	40.462	Cynoglossus_semilaevis
FBgn0052409	CG32409	84	43.581	ENSCVAG00000017878	rrs1	96	40.688	Cyprinodon_variegatus
FBgn0052409	CG32409	84	49.831	ENSDARG00000003941	rrs1	94	46.000	Danio_rerio
FBgn0052409	CG32409	92	43.692	ENSDNOG00000017900	RRS1	87	43.713	Dasypus_novemcinctus
FBgn0052409	CG32409	66	39.224	ENSDORG00000026331	Rrs1	89	37.597	Dipodomys_ordii
FBgn0052409	CG32409	56	44.162	ENSETEG00000000935	-	54	44.162	Echinops_telfairi
FBgn0052409	CG32409	91	43.344	ENSEBUG00000013506	rrs1	89	44.364	Eptatretus_burgeri
FBgn0052409	CG32409	92	43.653	ENSEASG00005001691	RRS1	88	41.739	Equus_asinus_asinus
FBgn0052409	CG32409	95	42.687	ENSECAG00000004492	RRS1	86	45.085	Equus_caballus
FBgn0052409	CG32409	84	44.068	ENSEEUG00000013719	RRS1	88	41.040	Erinaceus_europaeus
FBgn0052409	CG32409	84	45.424	ENSFCAG00000014332	RRS1	90	42.529	Felis_catus
FBgn0052409	CG32409	79	39.649	ENSGALG00000030890	RRS1	93	37.079	Gallus_gallus
FBgn0052409	CG32409	84	45.085	ENSGACG00000002969	rrs1	93	42.816	Gasterosteus_aculeatus
FBgn0052409	CG32409	90	37.654	ENSGAGG00000023718	RRS1	95	37.921	Gopherus_agassizii
FBgn0052409	CG32409	92	44.582	ENSGGOG00000026663	RRS1	88	42.609	Gorilla_gorilla
FBgn0052409	CG32409	94	43.072	ENSHGLG00000021423	RRS1	79	45.085	Heterocephalus_glaber_female
FBgn0052409	CG32409	94	43.072	ENSHGLG00100020640	RRS1	79	45.085	Heterocephalus_glaber_male
FBgn0052409	CG32409	99	44.538	ENSHCOG00000015358	rrs1	93	44.706	Hippocampus_comes
FBgn0052409	CG32409	84	47.973	ENSIPUG00000014412	rrs1	83	47.119	Ictalurus_punctatus
FBgn0052409	CG32409	92	44.000	ENSSTOG00000026310	RRS1	79	45.424	Ictidomys_tridecemlineatus
FBgn0052409	CG32409	84	44.444	ENSJJAG00000011507	-	87	41.449	Jaculus_jaculus
FBgn0052409	CG32409	70	42.276	ENSJJAG00000020395	-	71	42.276	Jaculus_jaculus
FBgn0052409	CG32409	83	47.119	ENSKMAG00000008238	rrs1	98	43.429	Kryptolebias_marmoratus
FBgn0052409	CG32409	86	47.869	ENSLACG00000004058	RRS1	90	48.026	Latimeria_chalumnae
FBgn0052409	CG32409	89	47.756	ENSLOCG00000017812	rrs1	94	46.532	Lepisosteus_oculatus
FBgn0052409	CG32409	92	42.769	ENSLAFG00000015405	RRS1	79	44.068	Loxodonta_africana
FBgn0052409	CG32409	99	42.308	ENSMFAG00000042747	RRS1	88	42.609	Macaca_fascicularis
FBgn0052409	CG32409	99	42.308	ENSMMUG00000000886	RRS1	88	42.609	Macaca_mulatta
FBgn0052409	CG32409	99	42.308	ENSMNEG00000011696	RRS1	88	42.609	Macaca_nemestrina
FBgn0052409	CG32409	92	44.582	ENSMLEG00000004794	RRS1	88	42.609	Mandrillus_leucophaeus
FBgn0052409	CG32409	83	48.986	ENSMZEG00005004349	RRS1	91	46.707	Maylandia_zebra
FBgn0052409	CG32409	99	43.785	ENSMAUG00000005392	Rrs1	79	46.441	Mesocricetus_auratus
FBgn0052409	CG32409	99	43.391	ENSMOCG00000015862	Rrs1	75	45.424	Microtus_ochrogaster
FBgn0052409	CG32409	94	44.012	ENSMODG00000024952	RRS1	90	42.241	Monodelphis_domestica
FBgn0052409	CG32409	99	43.251	MGP_CAROLIEiJ_G0013936	Rrs1	80	45.763	Mus_caroli
FBgn0052409	CG32409	95	44.412	ENSMUSG00000061024	Rrs1	79	45.763	Mus_musculus
FBgn0052409	CG32409	94	43.373	MGP_PahariEiJ_G0023883	Rrs1	79	45.424	Mus_pahari
FBgn0052409	CG32409	95	44.412	MGP_SPRETEiJ_G0014739	Rrs1	79	45.763	Mus_spretus
FBgn0052409	CG32409	94	43.807	ENSMPUG00000018626	RRS1	89	41.408	Mustela_putorius_furo
FBgn0052409	CG32409	94	42.900	ENSNGAG00000012904	Rrs1	79	44.407	Nannospalax_galili
FBgn0052409	CG32409	63	45.946	ENSNLEG00000027730	RRS1	81	41.544	Nomascus_leucogenys
FBgn0052409	CG32409	84	48.822	ENSONIG00000014187	rrs1	84	48.822	Oreochromis_niloticus
FBgn0052409	CG32409	91	40.557	ENSOANG00000012348	RRS1	92	39.943	Ornithorhynchus_anatinus
FBgn0052409	CG32409	84	45.455	ENSOCUG00000013490	RRS1	90	43.478	Oryctolagus_cuniculus
FBgn0052409	CG32409	89	42.675	ENSOMEG00000008525	rrs1	96	41.714	Oryzias_melastigma
FBgn0052409	CG32409	94	42.900	ENSOGAG00000001085	RRS1	79	44.407	Otolemur_garnettii
FBgn0052409	CG32409	92	39.628	ENSOARG00000017417	RRS1	77	40.678	Ovis_aries
FBgn0052409	CG32409	92	44.582	ENSPPAG00000024378	RRS1	88	42.609	Pan_paniscus
FBgn0052409	CG32409	84	44.746	ENSPPRG00000021408	RRS1	90	41.954	Panthera_pardus
FBgn0052409	CG32409	92	44.272	ENSPTRG00000030988	RRS1	88	42.319	Pan_troglodytes
FBgn0052409	CG32409	87	46.405	ENSPKIG00000007953	rrs1	94	44.348	Paramormyrops_kingsleyae
FBgn0052409	CG32409	94	42.771	ENSPEMG00000014427	Rrs1	88	41.449	Peromyscus_maniculatus_bairdii
FBgn0052409	CG32409	84	46.622	ENSPMAG00000006513	rrs1	91	45.352	Petromyzon_marinus
FBgn0052409	CG32409	84	44.000	ENSPCIG00000026695	RRS1	94	41.761	Phascolarctos_cinereus
FBgn0052409	CG32409	84	49.662	ENSPFOG00000020722	rrs1	98	46.628	Poecilia_formosa
FBgn0052409	CG32409	84	43.243	ENSPREG00000019960	rrs1	96	41.143	Poecilia_reticulata
FBgn0052409	CG32409	84	46.128	ENSPPYG00000018637	RRS1	97	46.128	Pongo_abelii
FBgn0052409	CG32409	94	43.243	ENSPCAG00000009115	RRS1	88	43.072	Procavia_capensis
FBgn0052409	CG32409	82	47.079	ENSPNAG00000021707	rrs1	92	43.804	Pygocentrus_nattereri
FBgn0052409	CG32409	84	46.441	ENSRNOG00000007240	Rrs1	79	46.441	Rattus_norvegicus
FBgn0052409	CG32409	92	44.582	ENSRBIG00000009132	RRS1	90	43.678	Rhinopithecus_bieti
FBgn0052409	CG32409	92	44.582	ENSRROG00000013472	RRS1	90	43.678	Rhinopithecus_roxellana
FBgn0052409	CG32409	84	46.284	ENSSBOG00000011006	-	82	46.284	Saimiri_boliviensis_boliviensis
FBgn0052409	CG32409	84	46.284	ENSSBOG00000012639	-	82	46.284	Saimiri_boliviensis_boliviensis
FBgn0052409	CG32409	83	37.671	ENSSFOG00015015772	rrs1	89	36.070	Scleropages_formosus
FBgn0052409	CG32409	83	46.939	ENSSMAG00000015226	rrs1	95	44.915	Scophthalmus_maximus
FBgn0052409	CG32409	79	50.862	ENSSARG00000006976	RRS1	77	51.327	Sorex_araneus
FBgn0052409	CG32409	84	45.085	ENSSSCG00000006214	RRS1	88	41.739	Sus_scrofa
FBgn0052409	CG32409	91	47.516	ENSTRUG00000008796	rrs1	87	47.603	Takifugu_rubripes
FBgn0052409	CG32409	79	50.903	ENSTNIG00000004026	rrs1	99	47.214	Tetraodon_nigroviridis
FBgn0052409	CG32409	92	43.034	ENSTBEG00000014752	RRS1	88	41.159	Tupaia_belangeri
FBgn0052409	CG32409	95	43.235	ENSUAMG00000008502	RRS1	92	42.647	Ursus_americanus
FBgn0052409	CG32409	84	44.068	ENSVVUG00000018452	RRS1	79	44.068	Vulpes_vulpes
FBgn0052409	CG32409	84	48.649	ENSXCOG00000009809	rrs1	90	45.748	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000055	ribosomal large subunit export from nucleus	21873635.	IBA	Process
GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0030687	preribosome, large subunit precursor	21873635.	IBA	Component
GO:0042273	ribosomal large subunit biogenesis	21873635.	IBA	Process