EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0052423 (Gene tree)
Gene ID: 38605
Gene Symbol: shep
Alias: -
Full Name: alan shepard
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 122124 bases
Position: chr3L:5155821-5277944
Accession: FBgn0052423
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0305483	RRM_1	PF00076.22	5.4e-29	1	2
FBpp0305483	RRM_1	PF00076.22	5.4e-29	2	2
FBpp0305484	RRM_1	PF00076.22	5.7e-29	1	2
FBpp0305484	RRM_1	PF00076.22	5.7e-29	2	2
FBpp0290814	RRM_1	PF00076.22	5.8e-29	1	2
FBpp0290814	RRM_1	PF00076.22	5.8e-29	2	2
FBpp0305482	RRM_1	PF00076.22	5.8e-29	1	2
FBpp0305482	RRM_1	PF00076.22	5.8e-29	2	2
FBpp0076875	RRM_1	PF00076.22	1.8e-28	1	2
FBpp0076875	RRM_1	PF00076.22	1.8e-28	2	2
FBpp0301014	RRM_1	PF00076.22	1.9e-28	1	2
FBpp0301014	RRM_1	PF00076.22	1.9e-28	2	2
FBpp0076876	RRM_1	PF00076.22	1.6e-26	1	2
FBpp0076876	RRM_1	PF00076.22	1.6e-26	2	2
FBpp0076877	RRM_1	PF00076.22	1.6e-26	1	2
FBpp0076877	RRM_1	PF00076.22	1.6e-26	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0333287	-	2541	-	FBpp0305482	379 (aa)	-	Q8MSV2-4
FBtr0077174	-	7989	-	FBpp0076877	499 (aa)	-	Q8MSV2-2
FBtr0301599	-	2776	-	FBpp0290814	379 (aa)	-	Q8MSV2-4
FBtr0077172	-	3036	-	FBpp0076875	578 (aa)	-	Q8MSV2-1
FBtr0077173	-	4580	-	FBpp0076876	499 (aa)	-	Q8MSV2-2
FBtr0308859	-	5850	-	FBpp0301014	590 (aa)	-	Q8MSV2
FBtr0333288	-	7617	-	FBpp0305483	371 (aa)	-	Q8MSV2-7
FBtr0333289	-	4661	-	FBpp0305484	377 (aa)	-	Q8MSV2-6

Gene Model

Click here to download FBgn0052423's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0052423's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0052423	shep	51	35.393	FBgn0264270	Sxl	55	35.393
FBgn0052423	shep	50	33.333	FBgn0086675	fne	52	33.871

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0052423	shep	54	53.202	WBGene00006331	sup-26	58	61.404	Caenorhabditis_elegans

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	25294944.	HDA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0007552	metamorphosis	24931409.	IMP	Process
GO:0008050	female courtship behavior	24931409.	IMP	Process
GO:0008143	poly(A) binding	21873635.	IBA	Function
GO:0008266	poly(U) RNA binding	21873635.	IBA	Function
GO:0008344	adult locomotory behavior	24931409.	IMP	Process
GO:0009629	response to gravity	16594976.	IMP	Process
GO:0016322	neuron remodeling	24931409.	IMP	Process
GO:0034976	response to endoplasmic reticulum stress	23667151.	IMP	Process
GO:0042332	gravitaxis	16594976.	IMP	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component