EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0064225 (Gene tree)
Gene ID: 3355124
Gene Symbol: RpL5
Alias: -
Full Name: Ribosomal protein L5
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 4606
Position: chr2L: 22532279-22536884
Accession: FBgn0064225
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0111129	-	1079	-	FBpp0110421	299 (aa)	-	Q9W5R8
FBtr0344793	-	3835	-	FBpp0311121	299 (aa)	-	Q9W5R8
FBtr0332633	-	1945	-	FBpp0304879	299 (aa)	-	Q9W5R8
FBtr0111132	-	1024	-	FBpp0110424	299 (aa)	-	Q9W5R8

Gene Model

Click here to download FBgn0064225's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0064225's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0064225	RpL5	96	61.324	WBGene00004416	rpl-5	97	61.324	Caenorhabditis_elegans
FBgn0064225	RpL5	97	68.621	ENSG00000122406	RPL5	100	85.714	Homo_sapiens
FBgn0064225	RpL5	97	67.931	ENSMUSG00000058558	Rpl5	100	71.779	Mus_musculus
FBgn0064225	RpL5	93	57.447	YPL131W	RPL5	98	56.849	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000027	ribosomal large subunit assembly	21873635.	IBA	Process
GO:0000027	ribosomal large subunit assembly	-	ISS	Process
GO:0002181	cytoplasmic translation	16889426.	IC	Process
GO:0002181	cytoplasmic translation	17927810.	TAS	Process
GO:0003723	RNA binding	-	ISS	Function
GO:0003735	structural constituent of ribosome	16889426.	HDA	Function
GO:0003735	structural constituent of ribosome	-	IEA	Function
GO:0003735	structural constituent of ribosome	12368261.	NAS	Function
GO:0003735	structural constituent of ribosome	17927810.	TAS	Function
GO:0005515	protein binding	12368261.	IPI	Function
GO:0006412	translation	-	IEA	Process
GO:0008097	5S rRNA binding	21873635.	IBA	Function
GO:0008097	5S rRNA binding	12368261.	NAS	Function
GO:0022625	cytosolic large ribosomal subunit	21873635.	IBA	Component
GO:0022625	cytosolic large ribosomal subunit	12368261.	NAS	Component
GO:0022625	cytosolic large ribosomal subunit	17927810.	TAS	Component
GO:0022626	cytosolic ribosome	16889426.	HDA	Component