EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0085436 (Gene tree)
Gene ID: 5740252
Gene Symbol: Not1
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 12862 bases
Position: chr2R:9566146-9579007
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0111586	Not1	PF04054.15	7e-148	1	1
FBpp0111585	Not1	PF04054.15	8.4e-148	1	1
FBpp0111584	Not1	PF04054.15	8.4e-148	1	1
FBpp0293496	Not1	PF04054.15	8.4e-148	1	1
FBpp0308486	Not1	PF04054.15	8.4e-148	1	1
FBpp0291332	Not1	PF04054.15	1.9e-146	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0112672	-	8700	-	FBpp0111584	2505 (aa)	-	A8DY81
FBtr0112673	-	8694	-	FBpp0111585	2503 (aa)	-	A8DY80
FBtr0112674	-	8201	-	FBpp0111586	2220 (aa)	-	A8DY82
FBtr0302122	-	8340	-	FBpp0291332	2492 (aa)	-	C0PUX1
FBtr0339394	-	8191	-	FBpp0308486	2511 (aa)	-	A0A0B4LEZ3
FBtr0304957	-	10068	-	FBpp0293496	2505 (aa)	-	A8DY81

Gene Model

Click here to download FBgn0085436's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0085436's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0085436	Not1	99	48.431	ENSG00000125107	CNOT1	94	57.812	Homo_sapiens
FBgn0085436	Not1	99	47.412	ENSAPOG00000005042	cnot1	99	45.561	Acanthochromis_polyacanthus
FBgn0085436	Not1	99	48.431	ENSAMEG00000017298	CNOT1	99	46.111	Ailuropoda_melanoleuca
FBgn0085436	Not1	99	47.281	ENSACIG00000016003	cnot1	99	47.692	Amphilophus_citrinellus
FBgn0085436	Not1	99	48.227	ENSAPEG00000022342	cnot1	99	46.242	Amphiprion_percula
FBgn0085436	Not1	99	47.419	ENSATEG00000012892	cnot1	99	45.429	Anabas_testudineus
FBgn0085436	Not1	99	47.947	ENSAPLG00000007162	CNOT1	99	45.869	Anas_platyrhynchos
FBgn0085436	Not1	90	45.650	ENSACAG00000001602	CNOT1	98	43.315	Anolis_carolinensis
FBgn0085436	Not1	99	46.722	ENSANAG00000038198	CNOT1	99	44.865	Aotus_nancymaae
FBgn0085436	Not1	99	47.611	ENSACLG00000014234	cnot1	99	46.099	Astatotilapia_calliptera
FBgn0085436	Not1	99	47.611	ENSAMXG00000013170	cnot1	99	45.966	Astyanax_mexicanus
FBgn0085436	Not1	94	68.530	ENSBTAG00000020782	CNOT1	99	68.815	Bos_taurus
FBgn0085436	Not1	85	36.883	WBGene00002845	let-711	87	55.804	Caenorhabditis_elegans
FBgn0085436	Not1	99	48.364	ENSCJAG00000011318	CNOT1	99	62.162	Callithrix_jacchus
FBgn0085436	Not1	99	48.320	ENSCAFG00000008426	CNOT1	99	46.151	Canis_familiaris
FBgn0085436	Not1	94	68.365	ENSCAFG00020010156	CNOT1	99	68.657	Canis_lupus_dingo
FBgn0085436	Not1	99	48.431	ENSCHIG00000010452	CNOT1	99	46.269	Capra_hircus
FBgn0085436	Not1	99	48.431	ENSTSYG00000006888	CNOT1	99	46.230	Carlito_syrichta
FBgn0085436	Not1	97	52.672	ENSCPOG00000013026	CNOT1	99	52.759	Cavia_porcellus
FBgn0085436	Not1	99	47.082	ENSCCAG00000026333	CNOT1	99	45.085	Cebus_capucinus
FBgn0085436	Not1	96	52.287	ENSCATG00000032625	CNOT1	99	46.230	Cercocebus_atys
FBgn0085436	Not1	99	48.431	ENSCLAG00000006289	CNOT1	99	46.230	Chinchilla_lanigera
FBgn0085436	Not1	99	48.431	ENSCSAG00000004731	CNOT1	99	46.230	Chlorocebus_sabaeus
FBgn0085436	Not1	67	79.310	ENSCHOG00000009712	CNOT1	67	79.310	Choloepus_hoffmanni
FBgn0085436	Not1	94	67.061	ENSCPBG00000026222	CNOT1	90	68.815	Chrysemys_picta_bellii
FBgn0085436	Not1	77	49.232	ENSCING00000009149	-	96	49.232	Ciona_intestinalis
FBgn0085436	Not1	95	48.594	ENSCSAVG00000002414	-	96	53.297	Ciona_savignyi
FBgn0085436	Not1	99	47.669	ENSCANG00000040534	CNOT1	99	45.658	Colobus_angolensis_palliatus
FBgn0085436	Not1	99	48.279	ENSCGRG00001016365	Cnot1	99	46.111	Cricetulus_griseus_chok1gshd
FBgn0085436	Not1	99	48.279	ENSCGRG00000001714	Cnot1	99	46.111	Cricetulus_griseus_crigri
FBgn0085436	Not1	99	47.954	ENSCVAG00000018930	cnot1	72	51.820	Cyprinodon_variegatus
FBgn0085436	Not1	99	48.169	ENSDARG00000004174	cnot1	99	46.317	Danio_rerio
FBgn0085436	Not1	99	47.674	ENSDNOG00000013250	CNOT1	93	51.763	Dasypus_novemcinctus
FBgn0085436	Not1	83	71.053	ENSETEG00000012806	CNOT1	74	71.053	Echinops_telfairi
FBgn0085436	Not1	78	55.132	ENSEBUG00000011534	cnot1	90	68.456	Eptatretus_burgeri
FBgn0085436	Not1	88	68.530	ENSEASG00005005819	CNOT1	97	68.530	Equus_asinus_asinus
FBgn0085436	Not1	99	48.212	ENSECAG00000009889	CNOT1	99	48.410	Equus_caballus
FBgn0085436	Not1	88	52.064	ENSEEUG00000006015	CNOT1	89	52.476	Erinaceus_europaeus
FBgn0085436	Not1	99	47.298	ENSELUG00000014085	cnot1	99	50.096	Esox_lucius
FBgn0085436	Not1	99	48.408	ENSFCAG00000025155	CNOT1	99	46.580	Felis_catus
FBgn0085436	Not1	99	47.811	ENSFALG00000007285	CNOT1	99	45.842	Ficedula_albicollis
FBgn0085436	Not1	99	48.431	ENSFDAG00000013399	CNOT1	99	46.230	Fukomys_damarensis
FBgn0085436	Not1	96	53.085	ENSFHEG00000020574	cnot1	99	45.696	Fundulus_heteroclitus
FBgn0085436	Not1	91	43.277	ENSGMOG00000012864	cnot1	100	43.387	Gadus_morhua
FBgn0085436	Not1	99	47.922	ENSGALG00000002301	CNOT1	99	45.902	Gallus_gallus
FBgn0085436	Not1	96	53.085	ENSGAFG00000015005	cnot1	99	46.124	Gambusia_affinis
FBgn0085436	Not1	89	45.388	ENSGACG00000002606	cnot1	99	54.187	Gasterosteus_aculeatus
FBgn0085436	Not1	99	48.564	ENSGAGG00000022646	CNOT1	99	50.750	Gopherus_agassizii
FBgn0085436	Not1	99	48.431	ENSGGOG00000009547	CNOT1	99	46.230	Gorilla_gorilla
FBgn0085436	Not1	99	47.671	ENSHBUG00000001729	cnot1	99	46.072	Haplochromis_burtoni
FBgn0085436	Not1	99	48.475	ENSHGLG00000014322	CNOT1	99	46.269	Heterocephalus_glaber_female
FBgn0085436	Not1	99	47.421	ENSHCOG00000006501	cnot1	99	45.120	Hippocampus_comes
FBgn0085436	Not1	99	47.880	ENSIPUG00000011915	cnot1	99	46.023	Ictalurus_punctatus
FBgn0085436	Not1	99	48.230	ENSSTOG00000005490	CNOT1	99	46.269	Ictidomys_tridecemlineatus
FBgn0085436	Not1	99	48.276	ENSJJAG00000000633	Cnot1	99	46.069	Jaculus_jaculus
FBgn0085436	Not1	99	48.070	ENSKMAG00000006149	cnot1	99	45.838	Kryptolebias_marmoratus
FBgn0085436	Not1	94	69.151	ENSLBEG00000004740	cnot1	99	69.151	Labrus_bergylta
FBgn0085436	Not1	94	53.228	ENSLACG00000010869	CNOT1	92	53.060	Latimeria_chalumnae
FBgn0085436	Not1	99	47.879	ENSLOCG00000006324	cnot1	99	45.679	Lepisosteus_oculatus
FBgn0085436	Not1	99	48.322	ENSLAFG00000000098	CNOT1	99	46.154	Loxodonta_africana
FBgn0085436	Not1	99	48.387	ENSMFAG00000035888	CNOT1	99	46.142	Macaca_fascicularis
FBgn0085436	Not1	99	48.475	ENSMMUG00000014625	CNOT1	94	70.652	Macaca_mulatta
FBgn0085436	Not1	99	48.431	ENSMNEG00000031820	CNOT1	99	48.366	Macaca_nemestrina
FBgn0085436	Not1	99	47.245	ENSMLEG00000040933	CNOT1	99	45.236	Mandrillus_leucophaeus
FBgn0085436	Not1	99	47.687	ENSMAMG00000016524	cnot1	99	45.724	Mastacembelus_armatus
FBgn0085436	Not1	99	47.655	ENSMZEG00005016210	cnot1	99	45.422	Maylandia_zebra
FBgn0085436	Not1	99	47.966	ENSMGAG00000001908	CNOT1	99	45.893	Meleagris_gallopavo
FBgn0085436	Not1	99	48.561	ENSMICG00000007071	CNOT1	99	46.248	Microcebus_murinus
FBgn0085436	Not1	99	47.993	ENSMOCG00000017969	Cnot1	99	46.190	Microtus_ochrogaster
FBgn0085436	Not1	99	46.137	ENSMMOG00000019134	cnot1	99	44.519	Mola_mola
FBgn0085436	Not1	99	48.410	ENSMODG00000014199	CNOT1	99	46.290	Monodelphis_domestica
FBgn0085436	Not1	99	47.906	ENSMALG00000008645	cnot1	99	46.121	Monopterus_albus
FBgn0085436	Not1	90	54.007	MGP_CAROLIEiJ_G0031430	Cnot1	87	54.125	Mus_caroli
FBgn0085436	Not1	99	48.104	ENSMUSG00000036550	Cnot1	99	46.190	Mus_musculus
FBgn0085436	Not1	99	48.104	MGP_PahariEiJ_G0023028	Cnot1	99	46.190	Mus_pahari
FBgn0085436	Not1	99	48.104	MGP_SPRETEiJ_G0032549	Cnot1	99	46.190	Mus_spretus
FBgn0085436	Not1	99	48.408	ENSMPUG00000004830	CNOT1	99	46.230	Mustela_putorius_furo
FBgn0085436	Not1	99	48.194	ENSMLUG00000003728	CNOT1	99	46.190	Myotis_lucifugus
FBgn0085436	Not1	99	48.431	ENSNGAG00000018628	Cnot1	99	46.230	Nannospalax_galili
FBgn0085436	Not1	95	47.019	ENSNBRG00000019358	cnot1	99	47.498	Neolamprologus_brichardi
FBgn0085436	Not1	99	48.413	ENSNLEG00000003566	CNOT1	99	46.209	Nomascus_leucogenys
FBgn0085436	Not1	86	75.000	ENSMEUG00000006145	CNOT1	85	75.000	Notamacropus_eugenii
FBgn0085436	Not1	83	72.052	ENSOPRG00000005604	CNOT1	73	76.847	Ochotona_princeps
FBgn0085436	Not1	99	48.475	ENSODEG00000016337	CNOT1	99	46.309	Octodon_degus
FBgn0085436	Not1	99	48.181	ENSONIG00000007358	cnot1	99	46.024	Oreochromis_niloticus
FBgn0085436	Not1	96	52.857	ENSOANG00000012109	CNOT1	99	48.754	Ornithorhynchus_anatinus
FBgn0085436	Not1	99	48.364	ENSOCUG00000006911	CNOT1	99	46.230	Oryctolagus_cuniculus
FBgn0085436	Not1	99	48.156	ENSORLG00000013734	cnot1	99	46.148	Oryzias_latipes
FBgn0085436	Not1	96	47.380	ENSORLG00020017012	cnot1	99	45.371	Oryzias_latipes_hni
FBgn0085436	Not1	94	51.437	ENSORLG00015007091	cnot1	99	45.608	Oryzias_latipes_hsok
FBgn0085436	Not1	96	47.226	ENSOMEG00000015124	cnot1	99	51.060	Oryzias_melastigma
FBgn0085436	Not1	99	48.431	ENSOGAG00000000543	CNOT1	99	46.151	Otolemur_garnettii
FBgn0085436	Not1	99	48.431	ENSOARG00000001567	CNOT1	99	46.269	Ovis_aries
FBgn0085436	Not1	99	48.431	ENSPPAG00000022013	CNOT1	99	46.230	Pan_paniscus
FBgn0085436	Not1	99	48.408	ENSPPRG00000004867	CNOT1	99	46.230	Panthera_pardus
FBgn0085436	Not1	99	48.408	ENSPTIG00000012589	CNOT1	99	46.230	Panthera_tigris_altaica
FBgn0085436	Not1	99	48.259	ENSPTRG00000008183	CNOT1	99	46.142	Pan_troglodytes
FBgn0085436	Not1	99	47.598	ENSPANG00000020901	CNOT1	99	45.419	Papio_anubis
FBgn0085436	Not1	99	46.763	ENSPKIG00000002914	CNOT1	94	50.955	Paramormyrops_kingsleyae
FBgn0085436	Not1	99	48.135	ENSPKIG00000023538	CNOT1	99	46.041	Paramormyrops_kingsleyae
FBgn0085436	Not1	99	48.762	ENSPSIG00000005499	CNOT1	99	46.212	Pelodiscus_sinensis
FBgn0085436	Not1	99	48.357	ENSPMAG00000009381	cnot1	99	52.385	Petromyzon_marinus
FBgn0085436	Not1	94	68.530	ENSPCIG00000007343	CNOT1	99	68.815	Phascolarctos_cinereus
FBgn0085436	Not1	98	48.100	ENSPFOG00000003497	cnot1	100	52.411	Poecilia_formosa
FBgn0085436	Not1	75	69.151	ENSPLAG00000014018	cnot1	99	69.151	Poecilia_latipinna
FBgn0085436	Not1	75	69.151	ENSPMEG00000005868	cnot1	99	69.439	Poecilia_mexicana
FBgn0085436	Not1	75	69.151	ENSPREG00000018793	cnot1	99	69.151	Poecilia_reticulata
FBgn0085436	Not1	99	48.431	ENSPPYG00000007410	CNOT1	99	46.230	Pongo_abelii
FBgn0085436	Not1	86	63.061	ENSPCAG00000003241	CNOT1	86	63.239	Procavia_capensis
FBgn0085436	Not1	99	48.455	ENSPCOG00000027139	CNOT1	99	46.160	Propithecus_coquereli
FBgn0085436	Not1	99	46.640	ENSPVAG00000004243	CNOT1	99	44.620	Pteropus_vampyrus
FBgn0085436	Not1	99	47.861	ENSPNYG00000012919	cnot1	99	46.072	Pundamilia_nyererei
FBgn0085436	Not1	99	48.073	ENSPNAG00000000246	cnot1	99	46.148	Pygocentrus_nattereri
FBgn0085436	Not1	99	48.037	ENSRNOG00000012271	Cnot1	99	46.190	Rattus_norvegicus
FBgn0085436	Not1	99	48.194	ENSRBIG00000044598	CNOT1	99	45.702	Rhinopithecus_bieti
FBgn0085436	Not1	99	48.431	ENSRROG00000000906	CNOT1	99	46.230	Rhinopithecus_roxellana
FBgn0085436	Not1	59	31.887	YCR093W	CDC39	57	31.887	Saccharomyces_cerevisiae
FBgn0085436	Not1	99	45.995	ENSSBOG00000029155	CNOT1	99	44.121	Saimiri_boliviensis_boliviensis
FBgn0085436	Not1	99	48.217	ENSSHAG00000012187	CNOT1	99	46.323	Sarcophilus_harrisii
FBgn0085436	Not1	96	46.772	ENSSFOG00015017614	cnot1	95	51.330	Scleropages_formosus
FBgn0085436	Not1	99	47.485	ENSSMAG00000013844	cnot1	99	45.419	Scophthalmus_maximus
FBgn0085436	Not1	99	47.180	ENSSDUG00000021491	cnot1	99	45.480	Seriola_dumerili
FBgn0085436	Not1	99	47.760	ENSSLDG00000014816	cnot1	99	45.835	Seriola_lalandi_dorsalis
FBgn0085436	Not1	77	64.887	ENSSARG00000000762	CNOT1	83	64.887	Sorex_araneus
FBgn0085436	Not1	99	48.430	ENSSPAG00000018802	cnot1	99	46.245	Stegastes_partitus
FBgn0085436	Not1	94	68.530	ENSSSCG00000002799	CNOT1	99	68.815	Sus_scrofa
FBgn0085436	Not1	99	47.970	ENSTGUG00000005919	CNOT1	99	45.927	Taeniopygia_guttata
FBgn0085436	Not1	99	48.549	ENSTNIG00000018706	cnot1	99	46.221	Tetraodon_nigroviridis
FBgn0085436	Not1	79	65.926	ENSTBEG00000000720	CNOT1	70	65.926	Tupaia_belangeri
FBgn0085436	Not1	93	49.030	ENSTTRG00000008460	CNOT1	84	52.134	Tursiops_truncatus
FBgn0085436	Not1	99	48.408	ENSUAMG00000009251	CNOT1	99	46.230	Ursus_americanus
FBgn0085436	Not1	99	48.408	ENSUMAG00000021291	CNOT1	99	46.230	Ursus_maritimus
FBgn0085436	Not1	93	52.225	ENSVPAG00000008846	CNOT1	95	52.225	Vicugna_pacos
FBgn0085436	Not1	94	68.365	ENSVVUG00000024037	CNOT1	99	68.657	Vulpes_vulpes
FBgn0085436	Not1	99	46.996	ENSXETG00000015900	cnot1	94	50.216	Xenopus_tropicalis
FBgn0085436	Not1	96	53.085	ENSXCOG00000013552	cnot1	99	46.184	Xiphophorus_couchianus
FBgn0085436	Not1	96	53.085	ENSXMAG00000006031	cnot1	99	46.145	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	20504953.	IMP	Process
GO:0004535	poly(A)-specific ribonuclease activity	20504953.	IDA	Function
GO:0005515	protein binding	21981923.30279526.	IPI	Function
GO:0005737	cytoplasm	20504953.	IDA	Component
GO:0006402	mRNA catabolic process	23303381.	IDA	Process
GO:0017148	negative regulation of translation	23303381.	IDA	Process
GO:0030014	CCR4-NOT complex	20504953.	IDA	Component
GO:0030015	CCR4-NOT core complex	-	IEA	Component
GO:0030707	ovarian follicle cell development	26205122.	IMP	Process