EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0259152 (Gene tree)
Gene ID: 43018
Gene Symbol: Clbn
Alias: -
Full Name: Caliban
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 3654
Position: chr3R: 25127502-25131155
Accession: FBgn0259152
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0301277	-	3270	-	FBpp0290492	992 (aa)	-	Q9VBX1
FBtr0301278	-	3258	-	FBpp0290493	992 (aa)	-	Q9VBX1

Gene Model

Click here to download FBgn0259152's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0259152's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0259152	Clbn	68	51.753	ENSG00000165525	NEMF	98	62.810	Homo_sapiens
FBgn0259152	Clbn	68	51.195	ENSMUSG00000020982	Nemf	98	62.810	Mus_musculus
FBgn0259152	Clbn	53	35.862	YPL009C		55	35.862	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	21873635.	IBA	Function
GO:0006611	protein export from nucleus	16103875.	IMP	Process
GO:0043023	ribosomal large subunit binding	21873635.	IBA	Function
GO:0072344	rescue of stalled ribosome	21873635.	IBA	Process
GO:1902167	positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator	22964637.	IMP	Process
GO:1902231	positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage	22964637.	IMP	Process
GO:1990112	RQC complex	21873635.	IBA	Component
GO:1990116	ribosome-associated ubiquitin-dependent protein catabolic process	21873635.	IBA	Process