EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0259937 (Gene tree)
Gene ID: 37873
Gene Symbol: Nop60B
Alias: -
Full Name: Nucleolar protein at 60B
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 11467 bases
Position: chr2R:24174877-24186343
Accession: FBgn0259937
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0072166	TruB_N	PF01509.18	6.3e-22	1	1
FBpp0099583	TruB_N	PF01509.18	6.3e-22	1	1
FBpp0289464	TruB_N	PF01509.18	6.3e-22	1	1
FBpp0290083	TruB_N	PF01509.18	6.3e-22	1	1
FBpp0293141	TruB_N	PF01509.18	2.5e-21	1	1
FBpp0072166	PUA	PF01472.20	7.4e-18	1	1
FBpp0099583	PUA	PF01472.20	7.4e-18	1	1
FBpp0289464	PUA	PF01472.20	7.4e-18	1	1
FBpp0290083	PUA	PF01472.20	7.4e-18	1	1
FBpp0293141	DKCLD	PF08068.12	7.6e-32	1	1
FBpp0072166	DKCLD	PF08068.12	9.9e-32	1	1
FBpp0099583	DKCLD	PF08068.12	9.9e-32	1	1
FBpp0289464	DKCLD	PF08068.12	9.9e-32	1	1
FBpp0290083	DKCLD	PF08068.12	9.9e-32	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0300861	-	3412	-	FBpp0290083	508 (aa)	-	O44081
FBtr0300227	-	2184	-	FBpp0289464	508 (aa)	-	O44081
FBtr0100213	-	2218	-	FBpp0099583	508 (aa)	-	O44081
FBtr0304599	-	971	-	FBpp0293141	227 (aa)	-	A0A0B4K8B2
FBtr0072258	-	1753	-	FBpp0072166	508 (aa)	-	O44081

Gene Model

Click here to download FBgn0259937's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0259937's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0259937	Nop60B	92	67.943	ENSG00000130826	DKC1	99	76.585	Homo_sapiens
FBgn0259937	Nop60B	88	69.000	ENSAPOG00000007799	dkc1	85	68.721	Acanthochromis_polyacanthus
FBgn0259937	Nop60B	89	68.473	ENSAMEG00000002776	DKC1	87	69.128	Ailuropoda_melanoleuca
FBgn0259937	Nop60B	88	70.500	ENSACIG00000022614	dkc1	87	70.892	Amphilophus_citrinellus
FBgn0259937	Nop60B	88	69.000	ENSAOCG00000013159	dkc1	87	68.591	Amphiprion_ocellaris
FBgn0259937	Nop60B	88	69.000	ENSAPEG00000002284	dkc1	87	68.822	Amphiprion_percula
FBgn0259937	Nop60B	88	65.700	ENSATEG00000013682	dkc1	79	71.642	Anabas_testudineus
FBgn0259937	Nop60B	93	65.496	ENSACAG00000015600	DKC1	84	64.256	Anolis_carolinensis
FBgn0259937	Nop60B	89	68.473	ENSANAG00000022732	DKC1	80	73.415	Aotus_nancymaae
FBgn0259937	Nop60B	88	70.500	ENSACLG00000015605	dkc1	88	70.070	Astatotilapia_calliptera
FBgn0259937	Nop60B	89	69.951	ENSAMXG00000017108	dkc1	84	71.461	Astyanax_mexicanus
FBgn0259937	Nop60B	89	66.995	ENSBTAG00000013045	DKC1	87	69.021	Bos_taurus
FBgn0259937	Nop60B	93	66.667	WBGene00010478	K01G5.5	97	64.037	Caenorhabditis_elegans
FBgn0259937	Nop60B	89	68.473	ENSCJAG00000004210	DKC1	86	70.045	Callithrix_jacchus
FBgn0259937	Nop60B	89	59.701	ENSCAFG00000009311	-	81	65.122	Canis_familiaris
FBgn0259937	Nop60B	89	67.980	ENSCAFG00000019620	-	81	71.770	Canis_familiaris
FBgn0259937	Nop60B	92	56.341	ENSCAFG00020009379	-	84	59.912	Canis_lupus_dingo
FBgn0259937	Nop60B	89	67.980	ENSCAFG00020008918	-	81	71.770	Canis_lupus_dingo
FBgn0259937	Nop60B	89	67.488	ENSCHIG00000017392	DKC1	87	69.021	Capra_hircus
FBgn0259937	Nop60B	91	66.595	ENSTSYG00000007681	DKC1	94	64.024	Carlito_syrichta
FBgn0259937	Nop60B	79	69.853	ENSCAPG00000003342	DKC1	92	70.471	Cavia_aperea
FBgn0259937	Nop60B	89	67.980	ENSCPOG00000008825	DKC1	86	69.388	Cavia_porcellus
FBgn0259937	Nop60B	89	68.657	ENSCCAG00000027418	DKC1	78	64.390	Cebus_capucinus
FBgn0259937	Nop60B	89	68.473	ENSCATG00000033602	DKC1	86	69.841	Cercocebus_atys
FBgn0259937	Nop60B	89	67.980	ENSCLAG00000000720	DKC1	87	69.841	Chinchilla_lanigera
FBgn0259937	Nop60B	91	66.883	ENSCSAG00000006706	DKC1	86	69.841	Chlorocebus_sabaeus
FBgn0259937	Nop60B	89	67.980	ENSCPBG00000005858	DKC1	87	72.727	Chrysemys_picta_bellii
FBgn0259937	Nop60B	85	67.692	ENSCING00000004599	-	81	70.743	Ciona_intestinalis
FBgn0259937	Nop60B	91	64.871	ENSCSAVG00000010047	-	97	67.436	Ciona_savignyi
FBgn0259937	Nop60B	91	66.883	ENSCANG00000027987	DKC1	86	69.841	Colobus_angolensis_palliatus
FBgn0259937	Nop60B	90	67.647	ENSCGRG00001014574	-	78	73.500	Cricetulus_griseus_chok1gshd
FBgn0259937	Nop60B	92	53.110	ENSCGRG00001016789	-	79	58.266	Cricetulus_griseus_chok1gshd
FBgn0259937	Nop60B	90	67.647	ENSCGRG00000016075	-	78	73.500	Cricetulus_griseus_crigri
FBgn0259937	Nop60B	92	53.110	ENSCGRG00000014809	-	81	57.033	Cricetulus_griseus_crigri
FBgn0259937	Nop60B	94	68.075	ENSCSEG00000012633	dkc1	94	67.647	Cynoglossus_semilaevis
FBgn0259937	Nop60B	87	68.182	ENSCVAG00000010155	dkc1	83	67.890	Cyprinodon_variegatus
FBgn0259937	Nop60B	88	69.500	ENSDARG00000016484	dkc1	88	68.421	Danio_rerio
FBgn0259937	Nop60B	90	67.249	ENSDNOG00000004218	DKC1	88	67.615	Dasypus_novemcinctus
FBgn0259937	Nop60B	94	68.519	ENSDORG00000013566	-	100	61.333	Dipodomys_ordii
FBgn0259937	Nop60B	89	69.458	ENSETEG00000016095	DKC1	81	74.121	Echinops_telfairi
FBgn0259937	Nop60B	87	68.687	ENSEBUG00000015962	dkc1	99	74.061	Eptatretus_burgeri
FBgn0259937	Nop60B	89	67.980	ENSEASG00005007484	DKC1	77	73.684	Equus_asinus_asinus
FBgn0259937	Nop60B	89	67.980	ENSECAG00000023524	DKC1	77	73.684	Equus_caballus
FBgn0259937	Nop60B	88	65.471	ENSEEUG00000003323	DKC1	97	69.660	Erinaceus_europaeus
FBgn0259937	Nop60B	98	67.568	ENSELUG00000014538	dkc1	91	68.151	Esox_lucius
FBgn0259937	Nop60B	89	67.980	ENSFCAG00000006577	DKC1	87	69.144	Felis_catus
FBgn0259937	Nop60B	89	65.550	ENSFALG00000011496	DKC1	85	68.080	Ficedula_albicollis
FBgn0259937	Nop60B	89	67.980	ENSFDAG00000002516	DKC1	87	69.565	Fukomys_damarensis
FBgn0259937	Nop60B	87	67.172	ENSFHEG00000004627	dkc1	91	65.284	Fundulus_heteroclitus
FBgn0259937	Nop60B	86	65.128	ENSGMOG00000017277	dkc1	99	71.795	Gadus_morhua
FBgn0259937	Nop60B	89	66.995	ENSGALG00000005054	DKC1	86	69.231	Gallus_gallus
FBgn0259937	Nop60B	89	68.159	ENSGAFG00000011486	dkc1	74	68.337	Gambusia_affinis
FBgn0259937	Nop60B	88	70.000	ENSGACG00000004373	dkc1	96	75.076	Gasterosteus_aculeatus
FBgn0259937	Nop60B	88	69.347	ENSGAGG00000011330	DKC1	84	71.363	Gopherus_agassizii
FBgn0259937	Nop60B	91	66.667	ENSGGOG00000001045	DKC1	86	69.615	Gorilla_gorilla
FBgn0259937	Nop60B	88	71.000	ENSHBUG00000012436	dkc1	86	69.655	Haplochromis_burtoni
FBgn0259937	Nop60B	93	65.432	ENSHGLG00000000649	DKC1	94	65.432	Heterocephalus_glaber_female
FBgn0259937	Nop60B	93	65.432	ENSHGLG00100001153	DKC1	95	65.432	Heterocephalus_glaber_male
FBgn0259937	Nop60B	92	67.308	ENSHCOG00000021099	dkc1	86	69.336	Hippocampus_comes
FBgn0259937	Nop60B	98	68.468	ENSIPUG00000010309	dkc1	87	69.469	Ictalurus_punctatus
FBgn0259937	Nop60B	91	66.234	ENSSTOG00000001074	-	91	68.778	Ictidomys_tridecemlineatus
FBgn0259937	Nop60B	85	64.318	ENSSTOG00000020149	-	85	64.318	Ictidomys_tridecemlineatus
FBgn0259937	Nop60B	91	57.792	ENSSTOG00000011904	-	82	59.819	Ictidomys_tridecemlineatus
FBgn0259937	Nop60B	51	67.826	ENSJJAG00000008207	-	81	67.826	Jaculus_jaculus
FBgn0259937	Nop60B	86	69.898	ENSJJAG00000010086	-	92	61.429	Jaculus_jaculus
FBgn0259937	Nop60B	88	68.000	ENSKMAG00000008010	dkc1	86	66.667	Kryptolebias_marmoratus
FBgn0259937	Nop60B	88	70.352	ENSLBEG00000019122	dkc1	93	68.053	Labrus_bergylta
FBgn0259937	Nop60B	98	65.766	ENSLACG00000014025	DKC1	91	72.111	Latimeria_chalumnae
FBgn0259937	Nop60B	98	68.919	ENSLOCG00000013713	dkc1	88	72.093	Lepisosteus_oculatus
FBgn0259937	Nop60B	94	65.344	ENSLAFG00000000221	DKC1	86	68.934	Loxodonta_africana
FBgn0259937	Nop60B	91	66.883	ENSMFAG00000032398	DKC1	74	69.841	Macaca_fascicularis
FBgn0259937	Nop60B	91	66.883	ENSMMUG00000005768	DKC1	86	69.841	Macaca_mulatta
FBgn0259937	Nop60B	91	66.883	ENSMNEG00000034503	DKC1	86	69.841	Macaca_nemestrina
FBgn0259937	Nop60B	91	66.883	ENSMLEG00000034422	DKC1	86	69.841	Mandrillus_leucophaeus
FBgn0259937	Nop60B	94	67.606	ENSMAMG00000005427	dkc1	89	73.116	Mastacembelus_armatus
FBgn0259937	Nop60B	88	70.500	ENSMZEG00005014503	dkc1	86	69.425	Maylandia_zebra
FBgn0259937	Nop60B	77	71.684	ENSMGAG00000009238	DKC1	88	70.443	Meleagris_gallopavo
FBgn0259937	Nop60B	94	67.593	ENSMAUG00000016454	-	92	61.429	Mesocricetus_auratus
FBgn0259937	Nop60B	74	70.060	ENSMICG00000002818	-	99	64.286	Microcebus_murinus
FBgn0259937	Nop60B	96	66.364	ENSMICG00000038751	-	80	72.932	Microcebus_murinus
FBgn0259937	Nop60B	91	68.750	ENSMOCG00000001169	-	92	59.286	Microtus_ochrogaster
FBgn0259937	Nop60B	88	68.500	ENSMMOG00000020348	dkc1	86	73.165	Mola_mola
FBgn0259937	Nop60B	87	69.192	ENSMODG00000009243	DKC1	82	63.617	Monodelphis_domestica
FBgn0259937	Nop60B	88	68.000	ENSMALG00000009454	dkc1	84	69.142	Monopterus_albus
FBgn0259937	Nop60B	82	63.785	MGP_CAROLIEiJ_G0033191	Dkc1	85	75.200	Mus_caroli
FBgn0259937	Nop60B	98	66.518	ENSMUSG00000031403	Dkc1	92	61.786	Mus_musculus
FBgn0259937	Nop60B	98	66.071	MGP_PahariEiJ_G0031735	Dkc1	94	63.360	Mus_pahari
FBgn0259937	Nop60B	98	66.518	MGP_SPRETEiJ_G0034351	Dkc1	92	61.786	Mus_spretus
FBgn0259937	Nop60B	94	63.958	ENSMPUG00000016136	DKC1	90	64.170	Mustela_putorius_furo
FBgn0259937	Nop60B	89	68.966	ENSMLUG00000011918	DKC1	76	70.677	Myotis_lucifugus
FBgn0259937	Nop60B	94	67.907	ENSNGAG00000015724	-	100	60.535	Nannospalax_galili
FBgn0259937	Nop60B	88	70.500	ENSNBRG00000005638	dkc1	80	74.177	Neolamprologus_brichardi
FBgn0259937	Nop60B	91	66.667	ENSNLEG00000014323	DKC1	86	69.615	Nomascus_leucogenys
FBgn0259937	Nop60B	89	68.966	ENSMEUG00000001066	DKC1	96	65.982	Notamacropus_eugenii
FBgn0259937	Nop60B	89	59.113	ENSOPRG00000005248	DKC1	70	69.714	Ochotona_princeps
FBgn0259937	Nop60B	89	68.473	ENSODEG00000011816	-	87	69.457	Octodon_degus
FBgn0259937	Nop60B	86	69.744	ENSODEG00000000549	-	92	61.290	Octodon_degus
FBgn0259937	Nop60B	88	70.500	ENSONIG00000013889	dkc1	86	69.725	Oreochromis_niloticus
FBgn0259937	Nop60B	84	71.728	ENSOANG00000008713	-	89	71.296	Ornithorhynchus_anatinus
FBgn0259937	Nop60B	89	68.966	ENSOCUG00000012646	DKC1	86	69.388	Oryctolagus_cuniculus
FBgn0259937	Nop60B	86	68.718	ENSORLG00000018748	dkc1	83	68.794	Oryzias_latipes
FBgn0259937	Nop60B	88	68.500	ENSOMEG00000005786	dkc1	82	72.269	Oryzias_melastigma
FBgn0259937	Nop60B	89	68.473	ENSOGAG00000003399	DKC1	76	73.935	Otolemur_garnettii
FBgn0259937	Nop60B	89	67.488	ENSOARG00000003047	DKC1	87	69.021	Ovis_aries
FBgn0259937	Nop60B	89	68.473	ENSPPAG00000023820	DKC1	86	69.841	Pan_paniscus
FBgn0259937	Nop60B	89	67.980	ENSPPRG00000009104	DKC1	87	69.144	Panthera_pardus
FBgn0259937	Nop60B	89	67.980	ENSPTIG00000017469	DKC1	87	69.635	Panthera_tigris_altaica
FBgn0259937	Nop60B	91	66.667	ENSPTRG00000022449	DKC1	86	69.615	Pan_troglodytes
FBgn0259937	Nop60B	91	66.667	ENSPTRG00000043416	-	75	69.615	Pan_troglodytes
FBgn0259937	Nop60B	91	66.883	ENSPANG00000011978	DKC1	86	69.841	Papio_anubis
FBgn0259937	Nop60B	88	69.000	ENSPKIG00000008443	dkc1	84	74.177	Paramormyrops_kingsleyae
FBgn0259937	Nop60B	86	70.256	ENSPSIG00000013765	DKC1	86	76.751	Pelodiscus_sinensis
FBgn0259937	Nop60B	88	66.000	ENSPMGG00000004097	dkc1	72	71.899	Periophthalmus_magnuspinnatus
FBgn0259937	Nop60B	88	69.802	ENSPEMG00000013348	Dkc1	73	60.515	Peromyscus_maniculatus_bairdii
FBgn0259937	Nop60B	89	68.966	ENSPCIG00000016706	DKC1	73	70.139	Phascolarctos_cinereus
FBgn0259937	Nop60B	88	68.000	ENSPFOG00000018653	dkc1	86	68.037	Poecilia_formosa
FBgn0259937	Nop60B	88	68.000	ENSPLAG00000003272	dkc1	77	68.037	Poecilia_latipinna
FBgn0259937	Nop60B	88	68.000	ENSPMEG00000010413	dkc1	86	68.037	Poecilia_mexicana
FBgn0259937	Nop60B	88	68.000	ENSPREG00000004100	dkc1	77	72.658	Poecilia_reticulata
FBgn0259937	Nop60B	91	66.667	ENSPPYG00000020892	DKC1	87	69.615	Pongo_abelii
FBgn0259937	Nop60B	71	76.033	ENSPCAG00000015034	DKC1	71	76.033	Procavia_capensis
FBgn0259937	Nop60B	88	68.844	ENSPCOG00000026874	DKC1	85	69.108	Propithecus_coquereli
FBgn0259937	Nop60B	89	67.980	ENSPVAG00000009222	DKC1	94	65.756	Pteropus_vampyrus
FBgn0259937	Nop60B	88	70.500	ENSPNYG00000020063	dkc1	88	69.005	Pundamilia_nyererei
FBgn0259937	Nop60B	98	67.568	ENSPNAG00000005780	dkc1	86	69.912	Pygocentrus_nattereri
FBgn0259937	Nop60B	90	64.878	ENSRNOG00000055562	Dkc1	82	70.264	Rattus_norvegicus
FBgn0259937	Nop60B	91	66.883	ENSRBIG00000028457	DKC1	74	69.841	Rhinopithecus_bieti
FBgn0259937	Nop60B	91	66.883	ENSRROG00000044780	DKC1	86	69.841	Rhinopithecus_roxellana
FBgn0259937	Nop60B	84	68.421	YLR175W	-	85	66.748	Saccharomyces_cerevisiae
FBgn0259937	Nop60B	89	68.473	ENSSBOG00000033746	DKC1	80	73.171	Saimiri_boliviensis_boliviensis
FBgn0259937	Nop60B	89	68.473	ENSSHAG00000002463	DKC1	93	68.397	Sarcophilus_harrisii
FBgn0259937	Nop60B	98	67.117	ENSSFOG00015009585	dkc1	90	70.065	Scleropages_formosus
FBgn0259937	Nop60B	88	68.500	ENSSMAG00000002552	dkc1	88	68.119	Scophthalmus_maximus
FBgn0259937	Nop60B	91	66.094	ENSSDUG00000009963	dkc1	92	64.859	Seriola_dumerili
FBgn0259937	Nop60B	87	68.687	ENSSLDG00000019342	dkc1	93	66.592	Seriola_lalandi_dorsalis
FBgn0259937	Nop60B	88	64.000	ENSSARG00000001822	DKC1	85	69.014	Sorex_araneus
FBgn0259937	Nop60B	89	67.980	ENSSPUG00000018907	DKC1	86	69.027	Sphenodon_punctatus
FBgn0259937	Nop60B	88	69.500	ENSSPAG00000002585	dkc1	75	73.165	Stegastes_partitus
FBgn0259937	Nop60B	91	66.017	ENSSSCG00000012823	DKC1	89	68.182	Sus_scrofa
FBgn0259937	Nop60B	78	71.537	ENSTGUG00000006781	DKC1	90	69.853	Taeniopygia_guttata
FBgn0259937	Nop60B	92	66.738	ENSTRUG00000004413	dkc1	87	69.037	Takifugu_rubripes
FBgn0259937	Nop60B	87	55.257	ENSTNIG00000002582	dkc1	86	55.281	Tetraodon_nigroviridis
FBgn0259937	Nop60B	53	71.852	ENSTBEG00000011262	DKC1	74	71.852	Tupaia_belangeri
FBgn0259937	Nop60B	86	69.744	ENSTTRG00000008089	DKC1	55	74.638	Tursiops_truncatus
FBgn0259937	Nop60B	89	68.473	ENSUAMG00000022721	DKC1	84	73.935	Ursus_americanus
FBgn0259937	Nop60B	89	67.488	ENSUMAG00000016899	DKC1	100	70.660	Ursus_maritimus
FBgn0259937	Nop60B	56	75.781	ENSVPAG00000003259	-	58	75.781	Vicugna_pacos
FBgn0259937	Nop60B	79	60.250	ENSVVUG00000021671	-	74	60.250	Vulpes_vulpes
FBgn0259937	Nop60B	89	67.980	ENSVVUG00000020734	-	85	63.692	Vulpes_vulpes
FBgn0259937	Nop60B	95	65.073	ENSXETG00000032517	DKC1	87	69.794	Xenopus_tropicalis
FBgn0259937	Nop60B	88	68.000	ENSXCOG00000005498	dkc1	85	72.911	Xiphophorus_couchianus
FBgn0259937	Nop60B	88	68.000	ENSXMAG00000004919	dkc1	86	68.265	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000495	box H/ACA snoRNA 3'-end processing	21873635.	IBA	Process
GO:0001522	pseudouridine synthesis	10087258.	IMP	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005730	nucleolus	10087258.	IDA	Component
GO:0006364	rRNA processing	10087258.	IMP	Process
GO:0007281	germ cell development	12645924.	IMP	Process
GO:0009982	pseudouridine synthase activity	21873635.	IBA	Function
GO:0031118	rRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0031120	snRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0031429	box H/ACA snoRNP complex	21873635.	IBA	Component
GO:0035220	wing disc development	20608977.	IMP	Process
GO:0042254	ribosome biogenesis	10087258.	IMP	Process
GO:1990481	mRNA pseudouridine synthesis	21873635.	IBA	Process