EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Gene Ontology

Description

Ensembl ID: FBgn0260400 (Gene tree)
Gene ID: 31000
Gene Symbol: elav
Alias: -
Full Name: embryonic lethal abnormal vision
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 13992 bases
Position: chrX:509235-523226
Accession: FBgn0260400
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0099643	RRM_5	PF13893.6	9.9e-12	1	2
FBpp0099643	RRM_5	PF13893.6	9.9e-12	2	2
FBpp0112915	RRM_5	PF13893.6	9.9e-12	1	2
FBpp0112915	RRM_5	PF13893.6	9.9e-12	2	2
FBpp0070086	RRM_5	PF13893.6	1e-11	1	2
FBpp0070086	RRM_5	PF13893.6	1e-11	2	2
FBpp0298002	RRM_5	PF13893.6	1e-11	1	2
FBpp0298002	RRM_5	PF13893.6	1e-11	2	2
FBpp0099643	RRM_1	PF00076.22	3.1e-59	1	4
FBpp0099643	RRM_1	PF00076.22	3.1e-59	2	4
FBpp0099643	RRM_1	PF00076.22	3.1e-59	3	4
FBpp0099643	RRM_1	PF00076.22	3.1e-59	4	4
FBpp0112915	RRM_1	PF00076.22	3.1e-59	1	4
FBpp0112915	RRM_1	PF00076.22	3.1e-59	2	4
FBpp0112915	RRM_1	PF00076.22	3.1e-59	3	4
FBpp0112915	RRM_1	PF00076.22	3.1e-59	4	4
FBpp0070086	RRM_1	PF00076.22	3.2e-59	1	4
FBpp0070086	RRM_1	PF00076.22	3.2e-59	2	4
FBpp0070086	RRM_1	PF00076.22	3.2e-59	3	4
FBpp0070086	RRM_1	PF00076.22	3.2e-59	4	4
FBpp0298002	RRM_1	PF00076.22	3.2e-59	1	4
FBpp0298002	RRM_1	PF00076.22	3.2e-59	2	4
FBpp0298002	RRM_1	PF00076.22	3.2e-59	3	4
FBpp0298002	RRM_1	PF00076.22	3.2e-59	4	4

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0114366	-	2248	-	FBpp0112915	479 (aa)	-	P16914
FBtr0070091	-	2505	-	FBpp0070086	483 (aa)	-	P16914
FBtr0307173	-	10506	-	FBpp0298002	483 (aa)	-	P16914
FBtr0100254	-	2602	-	FBpp0099643	479 (aa)	-	M9NFP7

Gene Model

Click here to download FBgn0260400's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0260400's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0260400	elav	74	61.326	FBgn0086675	fne	97	60.773
FBgn0260400	elav	69	42.308	FBgn0005649	Rox8	62	41.250
FBgn0260400	elav	61	39.286	FBgn0264270	Sxl	58	39.286
FBgn0260400	elav	71	57.222	FBgn0010263	Rbp9	80	54.188

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000900	translation repressor activity, mRNA regulatory element binding	10893231.	NAS	Function
GO:0003723	RNA binding	14522950.	IDA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0003729	mRNA binding	9642172.	NAS	Function
GO:0005634	nucleus	1716300.9087375.12591606.17646657.	IDA	Component
GO:0005634	nucleus	9642172.	TAS	Component
GO:0007281	germ cell development	10893231.	NAS	Process
GO:0007319	negative regulation of oskar mRNA translation	10893231.	NAS	Process
GO:0007399	nervous system development	9642172.	NAS	Process
GO:0007417	central nervous system development	10328928.	IMP	Process
GO:0008266	poly(U) RNA binding	12591606.	IDA	Function
GO:0009792	embryo development ending in birth or egg hatching	10893231.	NAS	Process
GO:0015030	Cajal body	9087375.	IDA	Component
GO:0031441	negative regulation of mRNA 3'-end processing	14522950.	IDA	Process