EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0260456 (Gene tree)
Gene ID: 37948
Gene Symbol: CG4806
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 2186 bases
Position: chr2R:24666158-24668343
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0072239	RRM_1	PF00076.22	5.9e-39	1	3
FBpp0072239	RRM_1	PF00076.22	5.9e-39	2	3
FBpp0072239	RRM_1	PF00076.22	5.9e-39	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0072332	-	2070	-	FBpp0072239	657 (aa)	-	B5RJM2

Gene Model

Click here to download FBgn0260456's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0260456's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0260456	CG4806	93	35.982	ENSAMEG00000004776	RBM28	62	40.734	Ailuropoda_melanoleuca
FBgn0260456	CG4806	66	38.320	ENSANAG00000033922	RBM28	67	37.381	Aotus_nancymaae
FBgn0260456	CG4806	67	38.493	ENSACLG00000025024	rbm28	63	40.041	Astatotilapia_calliptera
FBgn0260456	CG4806	62	43.620	ENSCJAG00000017731	RBM28	65	38.353	Callithrix_jacchus
FBgn0260456	CG4806	72	38.679	ENSCAFG00000001667	RBM28	69	39.504	Canis_familiaris
FBgn0260456	CG4806	72	38.679	ENSCAFG00020021648	RBM28	69	39.504	Canis_lupus_dingo
FBgn0260456	CG4806	66	38.900	ENSCHIG00000014146	RBM28	65	40.244	Capra_hircus
FBgn0260456	CG4806	70	35.391	ENSTSYG00000002892	RBM28	72	38.636	Carlito_syrichta
FBgn0260456	CG4806	62	33.256	ENSCAPG00000013218	RBM28	73	34.234	Cavia_aperea
FBgn0260456	CG4806	68	38.856	ENSCPOG00000006253	RBM28	71	38.007	Cavia_porcellus
FBgn0260456	CG4806	61	42.857	ENSCCAG00000035105	RBM28	72	37.472	Cebus_capucinus
FBgn0260456	CG4806	74	34.706	ENSCATG00000040497	RBM28	68	38.152	Cercocebus_atys
FBgn0260456	CG4806	92	32.053	ENSCLAG00000003707	RBM28	66	36.311	Chinchilla_lanigera
FBgn0260456	CG4806	65	37.832	ENSCING00000009238	-	54	39.083	Ciona_intestinalis
FBgn0260456	CG4806	50	34.431	ENSCSAVG00000007149	-	96	34.431	Ciona_savignyi
FBgn0260456	CG4806	50	42.939	ENSCGRG00001021278	Rbm28	59	45.085	Cricetulus_griseus_chok1gshd
FBgn0260456	CG4806	50	42.939	ENSCGRG00000005098	Rbm28	69	37.732	Cricetulus_griseus_crigri
FBgn0260456	CG4806	66	33.839	ENSCSEG00000004212	rbm28	67	36.884	Cynoglossus_semilaevis
FBgn0260456	CG4806	98	35.659	ENSDARG00000025332	rbm28	87	35.659	Danio_rerio
FBgn0260456	CG4806	94	34.770	ENSDNOG00000001124	RBM28	71	38.419	Dasypus_novemcinctus
FBgn0260456	CG4806	76	35.385	ENSDORG00000004184	Rbm28	86	36.623	Dipodomys_ordii
FBgn0260456	CG4806	69	36.752	ENSEBUG00000004419	rbm28	65	37.313	Eptatretus_burgeri
FBgn0260456	CG4806	67	37.938	ENSEASG00005008528	RBM28	66	37.598	Equus_asinus_asinus
FBgn0260456	CG4806	93	34.548	ENSECAG00000007745	RBM28	71	37.297	Equus_caballus
FBgn0260456	CG4806	92	32.448	ENSEEUG00000002389	RBM28	64	37.223	Erinaceus_europaeus
FBgn0260456	CG4806	67	36.000	ENSELUG00000020602	rbm28	62	37.778	Esox_lucius
FBgn0260456	CG4806	93	35.513	ENSFCAG00000000946	RBM28	69	40.000	Felis_catus
FBgn0260456	CG4806	68	39.148	ENSFDAG00000010169	RBM28	69	39.272	Fukomys_damarensis
FBgn0260456	CG4806	69	37.284	ENSGMOG00000007091	rbm28	70	37.580	Gadus_morhua
FBgn0260456	CG4806	67	35.805	ENSGAFG00000004802	rbm28	60	45.126	Gambusia_affinis
FBgn0260456	CG4806	57	32.558	ENSGAGG00000008873	RBM28	56	33.247	Gopherus_agassizii
FBgn0260456	CG4806	67	38.134	ENSHBUG00000009611	rbm28	66	40.456	Haplochromis_burtoni
FBgn0260456	CG4806	66	39.248	ENSHGLG00000005409	RBM28	65	39.228	Heterocephalus_glaber_female
FBgn0260456	CG4806	66	39.248	ENSHGLG00100016458	RBM28	65	39.228	Heterocephalus_glaber_male
FBgn0260456	CG4806	68	38.697	ENSSTOG00000002169	RBM28	66	39.530	Ictidomys_tridecemlineatus
FBgn0260456	CG4806	67	34.105	ENSKMAG00000013348	rbm28	86	33.770	Kryptolebias_marmoratus
FBgn0260456	CG4806	63	32.285	ENSLACG00000010485	-	82	34.914	Latimeria_chalumnae
FBgn0260456	CG4806	66	38.730	ENSLAFG00000010717	RBM28	65	38.600	Loxodonta_africana
FBgn0260456	CG4806	66	37.938	ENSMNEG00000036970	RBM28	63	39.627	Macaca_nemestrina
FBgn0260456	CG4806	71	36.791	ENSMAMG00000008525	rbm28	67	36.986	Mastacembelus_armatus
FBgn0260456	CG4806	67	38.289	ENSMZEG00005019625	rbm28	68	39.834	Maylandia_zebra
FBgn0260456	CG4806	66	46.316	ENSMAUG00000002263	Rbm28	56	44.850	Mesocricetus_auratus
FBgn0260456	CG4806	53	43.052	ENSMICG00000000107	RBM28	75	37.523	Microcebus_murinus
FBgn0260456	CG4806	67	39.712	ENSMODG00000015151	RBM28	64	39.300	Monodelphis_domestica
FBgn0260456	CG4806	68	39.394	MGP_CAROLIEiJ_G0028162	Rbm28	66	40.161	Mus_caroli
FBgn0260456	CG4806	92	35.250	ENSMUSG00000029701	Rbm28	66	39.919	Mus_musculus
FBgn0260456	CG4806	68	39.364	MGP_PahariEiJ_G0021920	Rbm28	66	39.759	Mus_pahari
FBgn0260456	CG4806	68	39.400	MGP_SPRETEiJ_G0029162	Rbm28	66	39.718	Mus_spretus
FBgn0260456	CG4806	93	34.467	ENSMPUG00000006511	RBM28	71	37.798	Mustela_putorius_furo
FBgn0260456	CG4806	96	34.808	ENSNGAG00000017946	-	71	39.205	Nannospalax_galili
FBgn0260456	CG4806	92	35.945	ENSNGAG00000006480	-	88	35.799	Nannospalax_galili
FBgn0260456	CG4806	54	48.810	ENSMEUG00000009611	RBM28	51	48.810	Notamacropus_eugenii
FBgn0260456	CG4806	70	37.328	ENSODEG00000003213	-	69	36.609	Octodon_degus
FBgn0260456	CG4806	92	34.535	ENSOANG00000000815	-	71	34.880	Ornithorhynchus_anatinus
FBgn0260456	CG4806	62	48.810	ENSOCUG00000003009	RBM28	67	38.095	Oryctolagus_cuniculus
FBgn0260456	CG4806	93	33.533	ENSORLG00000009636	rbm28	64	38.683	Oryzias_latipes
FBgn0260456	CG4806	80	43.333	ENSORLG00015015030	rbm28	67	43.333	Oryzias_latipes_hsok
FBgn0260456	CG4806	92	33.721	ENSOGAG00000006011	RBM28	75	36.831	Otolemur_garnettii
FBgn0260456	CG4806	66	40.167	ENSOARG00000002547	RBM28	65	41.010	Ovis_aries
FBgn0260456	CG4806	51	42.776	ENSPPAG00000041730	RBM28	72	36.547	Pan_paniscus
FBgn0260456	CG4806	69	40.481	ENSPPRG00000004420	RBM28	69	40.326	Panthera_pardus
FBgn0260456	CG4806	93	35.897	ENSPTIG00000008550	RBM28	69	40.326	Panthera_tigris_altaica
FBgn0260456	CG4806	60	46.914	ENSPANG00000022295	RBM28	68	36.967	Papio_anubis
FBgn0260456	CG4806	70	36.111	ENSPKIG00000023453	rbm28	63	37.551	Paramormyrops_kingsleyae
FBgn0260456	CG4806	70	38.800	ENSPEMG00000020673	Rbm28	65	39.200	Peromyscus_maniculatus_bairdii
FBgn0260456	CG4806	71	39.148	ENSPCIG00000012810	RBM28	66	39.235	Phascolarctos_cinereus
FBgn0260456	CG4806	66	37.124	ENSPREG00000014287	rbm28	92	34.286	Poecilia_reticulata
FBgn0260456	CG4806	67	40.039	ENSPCOG00000016797	RBM28	68	38.479	Propithecus_coquereli
FBgn0260456	CG4806	67	38.086	ENSPNYG00000014003	rbm28	63	40.456	Pundamilia_nyererei
FBgn0260456	CG4806	69	38.566	ENSRNOG00000005468	Rbm28	67	39.448	Rattus_norvegicus
FBgn0260456	CG4806	68	38.086	ENSSHAG00000017017	RBM28	70	36.312	Sarcophilus_harrisii
FBgn0260456	CG4806	67	37.662	ENSSFOG00015001231	rbm28	65	40.254	Scleropages_formosus
FBgn0260456	CG4806	67	33.682	ENSSPUG00000000838	RBM28	67	35.484	Sphenodon_punctatus
FBgn0260456	CG4806	92	36.012	ENSSSCG00000031847	RBM28	69	39.619	Sus_scrofa
FBgn0260456	CG4806	61	44.762	ENSTTRG00000013647	RBM28	61	44.375	Tursiops_truncatus
FBgn0260456	CG4806	70	36.117	ENSUAMG00000006949	RBM28	69	36.106	Ursus_americanus
FBgn0260456	CG4806	70	38.023	ENSUMAG00000005997	RBM28	69	38.374	Ursus_maritimus
FBgn0260456	CG4806	92	32.530	ENSVPAG00000008304	RBM28	69	35.687	Vicugna_pacos
FBgn0260456	CG4806	72	39.057	ENSVVUG00000007270	RBM28	69	39.885	Vulpes_vulpes
FBgn0260456	CG4806	68	34.848	ENSXCOG00000020357	rbm28	68	40.122	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component