EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0260943 (Gene tree)
Gene ID: 39919
Gene Symbol: Rbp6
Alias: -
Full Name: RNA-binding protein 6
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 179439 bases
Position: chr3L:17058774-17238212
Accession: FBgn0260943
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0075045	RRM_1	PF00076.22	1e-32	1	2
FBpp0075045	RRM_1	PF00076.22	1e-32	2	2
FBpp0305994	RRM_1	PF00076.22	1e-32	1	2
FBpp0305994	RRM_1	PF00076.22	1e-32	2	2
FBpp0112339	RRM_1	PF00076.22	2.2e-32	1	2
FBpp0112339	RRM_1	PF00076.22	2.2e-32	2	2
FBpp0288505	RRM_1	PF00076.22	1.2e-15	1	1
FBpp0301712	RRM_1	PF00076.22	2.2e-15	1	1
FBpp0112340	RRM_1	PF00076.22	2.4e-15	1	1
FBpp0301711	RRM_1	PF00076.22	2.4e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0113428	-	2260	-	FBpp0112340	257 (aa)	-	D5AEM6
FBtr0333861	-	9015	-	FBpp0305994	371 (aa)	-	M9PCV2
FBtr0113427	-	4368	-	FBpp0112339	499 (aa)	-	Q9VVE5-2
FBtr0075285	-	2173	-	FBpp0075045	369 (aa)	-	Q9VVE5
FBtr0290066	-	1441	-	FBpp0288505	162 (aa)	-	B7Z063
FBtr0310005	-	8403	-	FBpp0301711	259 (aa)	-	M9NG33
FBtr0310006	-	4918	-	FBpp0301712	225 (aa)	-	M9NDB5

Gene Model

Click here to download FBgn0260943's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0260943's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0260943	Rbp6	50	44.444	FBgn0263396	sqd	85	35.915
FBgn0260943	Rbp6	56	41.463	FBgn0004237	Hrb87F	50	39.267

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0260943	Rbp6	88	68.750	ENSG00000153944	MSI2	86	81.250	Homo_sapiens
FBgn0260943	Rbp6	88	65.278	ENSAPOG00000001658	msi2a	95	56.125	Acanthochromis_polyacanthus
FBgn0260943	Rbp6	88	68.750	ENSAMEG00000002697	MSI2	99	59.654	Ailuropoda_melanoleuca
FBgn0260943	Rbp6	88	65.278	ENSACIG00000009475	msi2a	97	51.194	Amphilophus_citrinellus
FBgn0260943	Rbp6	53	71.053	ENSAOCG00000014822	msi2a	60	67.521	Amphiprion_ocellaris
FBgn0260943	Rbp6	88	65.278	ENSAPEG00000007706	msi2a	95	56.125	Amphiprion_percula
FBgn0260943	Rbp6	88	65.278	ENSATEG00000010498	msi2a	95	56.125	Anabas_testudineus
FBgn0260943	Rbp6	88	66.438	ENSATEG00000003301	-	100	55.140	Anabas_testudineus
FBgn0260943	Rbp6	88	68.750	ENSANAG00000037827	MSI2	90	71.366	Aotus_nancymaae
FBgn0260943	Rbp6	90	64.626	ENSACLG00000007752	msi2a	95	56.410	Astatotilapia_calliptera
FBgn0260943	Rbp6	88	66.667	ENSAMXG00000010474	msi2b	95	56.196	Astyanax_mexicanus
FBgn0260943	Rbp6	88	66.667	ENSAMXG00000032796	msi2a	97	56.303	Astyanax_mexicanus
FBgn0260943	Rbp6	88	68.750	ENSBTAG00000004406	MSI2	97	57.925	Bos_taurus
FBgn0260943	Rbp6	88	61.644	WBGene00003423	msi-1	60	73.298	Caenorhabditis_elegans
FBgn0260943	Rbp6	88	68.750	ENSCJAG00000013998	MSI2	90	71.366	Callithrix_jacchus
FBgn0260943	Rbp6	88	68.750	ENSCAFG00020025620	MSI2	71	68.778	Canis_lupus_dingo
FBgn0260943	Rbp6	88	68.750	ENSCHIG00000016580	MSI2	95	57.265	Capra_hircus
FBgn0260943	Rbp6	88	68.750	ENSCPOG00000034042	MSI2	99	53.416	Cavia_porcellus
FBgn0260943	Rbp6	88	68.750	ENSCCAG00000033927	MSI2	90	71.366	Cebus_capucinus
FBgn0260943	Rbp6	88	68.750	ENSCATG00000040879	MSI2	90	71.366	Cercocebus_atys
FBgn0260943	Rbp6	88	67.808	ENSCLAG00000014325	MSI2	97	59.104	Chinchilla_lanigera
FBgn0260943	Rbp6	88	68.750	ENSCSAG00000005633	MSI2	97	57.143	Chlorocebus_sabaeus
FBgn0260943	Rbp6	70	62.281	ENSCHOG00000008660	MSI2	65	59.563	Choloepus_hoffmanni
FBgn0260943	Rbp6	93	65.563	ENSCPBG00000009942	MSI2	94	62.500	Chrysemys_picta_bellii
FBgn0260943	Rbp6	75	67.213	ENSCING00000018579	-	90	53.234	Ciona_intestinalis
FBgn0260943	Rbp6	76	70.732	ENSCSAVG00000010397	-	88	55.263	Ciona_savignyi
FBgn0260943	Rbp6	88	68.750	ENSCANG00000036414	MSI2	90	71.366	Colobus_angolensis_palliatus
FBgn0260943	Rbp6	88	68.750	ENSCGRG00001013330	Msi2	87	72.632	Cricetulus_griseus_chok1gshd
FBgn0260943	Rbp6	88	67.808	ENSCGRG00000003141	Msi2	100	59.483	Cricetulus_griseus_crigri
FBgn0260943	Rbp6	100	45.076	ENSCSEG00000003266	-	97	48.045	Cynoglossus_semilaevis
FBgn0260943	Rbp6	59	78.125	ENSCSEG00000013549	msi2a	65	78.125	Cynoglossus_semilaevis
FBgn0260943	Rbp6	88	44.398	ENSCSEG00000013557	msi2a	83	42.857	Cynoglossus_semilaevis
FBgn0260943	Rbp6	88	65.278	ENSCVAG00000017075	msi2a	95	56.125	Cyprinodon_variegatus
FBgn0260943	Rbp6	88	66.667	ENSDARG00000032614	msi2b	100	85.106	Danio_rerio
FBgn0260943	Rbp6	88	65.753	ENSDARG00000033901	msi2a	96	50.639	Danio_rerio
FBgn0260943	Rbp6	88	68.750	ENSDNOG00000014501	MSI2	100	55.488	Dasypus_novemcinctus
FBgn0260943	Rbp6	53	86.667	ENSDORG00000028440	-	99	86.667	Dipodomys_ordii
FBgn0260943	Rbp6	88	45.690	ENSDORG00000005394	Msi2	84	45.690	Dipodomys_ordii
FBgn0260943	Rbp6	88	60.417	ENSEBUG00000006732	msi2a	84	52.751	Eptatretus_burgeri
FBgn0260943	Rbp6	88	68.750	ENSEASG00005002965	MSI2	97	56.044	Equus_asinus_asinus
FBgn0260943	Rbp6	88	68.750	ENSECAG00000011435	MSI2	97	58.678	Equus_caballus
FBgn0260943	Rbp6	69	63.478	ENSEEUG00000007810	MSI2	98	46.296	Erinaceus_europaeus
FBgn0260943	Rbp6	88	66.667	ENSELUG00000001361	msi2b	89	63.750	Esox_lucius
FBgn0260943	Rbp6	89	66.438	ENSELUG00000011747	msi2a	94	54.622	Esox_lucius
FBgn0260943	Rbp6	88	68.750	ENSFCAG00000041686	MSI2	90	71.366	Felis_catus
FBgn0260943	Rbp6	52	69.231	ENSFCAG00000033787	-	73	64.748	Felis_catus
FBgn0260943	Rbp6	88	68.750	ENSFDAG00000016118	MSI2	100	59.654	Fukomys_damarensis
FBgn0260943	Rbp6	88	65.278	ENSFHEG00000000084	msi2a	89	76.429	Fundulus_heteroclitus
FBgn0260943	Rbp6	95	60.393	ENSGALG00000005567	MSI2	97	59.270	Gallus_gallus
FBgn0260943	Rbp6	88	51.007	ENSGAFG00000006974	msi2a	78	82.979	Gambusia_affinis
FBgn0260943	Rbp6	90	66.000	ENSGAGG00000016542	MSI2	100	57.407	Gopherus_agassizii
FBgn0260943	Rbp6	88	68.750	ENSGGOG00000013182	MSI2	90	71.366	Gorilla_gorilla
FBgn0260943	Rbp6	90	64.626	ENSHBUG00000020800	msi2a	95	56.410	Haplochromis_burtoni
FBgn0260943	Rbp6	95	52.941	ENSHGLG00000012444	MSI2	84	74.194	Heterocephalus_glaber_female
FBgn0260943	Rbp6	86	50.649	ENSHGLG00100003744	MSI2	100	49.345	Heterocephalus_glaber_male
FBgn0260943	Rbp6	53	81.250	ENSHGLG00100004028	-	87	81.250	Heterocephalus_glaber_male
FBgn0260943	Rbp6	88	63.889	ENSHCOG00000017241	-	65	54.167	Hippocampus_comes
FBgn0260943	Rbp6	88	65.278	ENSHCOG00000000266	msi2a	93	55.162	Hippocampus_comes
FBgn0260943	Rbp6	90	65.306	ENSIPUG00000021097	msi2a	96	54.342	Ictalurus_punctatus
FBgn0260943	Rbp6	88	66.667	ENSIPUG00000003732	msi2b	96	54.068	Ictalurus_punctatus
FBgn0260943	Rbp6	88	68.750	ENSSTOG00000007884	MSI2	99	53.416	Ictidomys_tridecemlineatus
FBgn0260943	Rbp6	86	50.216	ENSJJAG00000006292	-	100	48.908	Jaculus_jaculus
FBgn0260943	Rbp6	53	86.667	ENSJJAG00000009467	-	99	86.667	Jaculus_jaculus
FBgn0260943	Rbp6	88	65.278	ENSKMAG00000009494	msi2a	89	56.615	Kryptolebias_marmoratus
FBgn0260943	Rbp6	88	65.278	ENSLBEG00000007061	msi2a	74	86.667	Labrus_bergylta
FBgn0260943	Rbp6	100	46.689	ENSLBEG00000026223	-	100	47.887	Labrus_bergylta
FBgn0260943	Rbp6	52	44.444	ENSLACG00000016798	MSI2	89	75.294	Latimeria_chalumnae
FBgn0260943	Rbp6	88	66.667	ENSLOCG00000004675	msi2b	91	66.071	Lepisosteus_oculatus
FBgn0260943	Rbp6	88	68.750	ENSMFAG00000003775	MSI2	90	71.366	Macaca_fascicularis
FBgn0260943	Rbp6	88	68.750	ENSMMUG00000002069	MSI2	90	71.366	Macaca_mulatta
FBgn0260943	Rbp6	88	68.750	ENSMNEG00000045275	MSI2	90	71.366	Macaca_nemestrina
FBgn0260943	Rbp6	88	68.750	ENSMLEG00000033888	MSI2	90	71.366	Mandrillus_leucophaeus
FBgn0260943	Rbp6	88	65.278	ENSMAMG00000010503	msi2a	85	69.784	Mastacembelus_armatus
FBgn0260943	Rbp6	88	65.972	ENSMAMG00000002488	-	85	85.106	Mastacembelus_armatus
FBgn0260943	Rbp6	90	64.626	ENSMZEG00005007676	msi2a	95	55.840	Maylandia_zebra
FBgn0260943	Rbp6	88	67.808	ENSMAUG00000003862	Msi2	97	58.939	Mesocricetus_auratus
FBgn0260943	Rbp6	88	68.750	ENSMICG00000013598	-	90	71.366	Microcebus_murinus
FBgn0260943	Rbp6	95	50.281	ENSMICG00000032913	-	96	49.719	Microcebus_murinus
FBgn0260943	Rbp6	88	67.808	ENSMOCG00000005820	Msi2	97	59.104	Microtus_ochrogaster
FBgn0260943	Rbp6	92	63.576	ENSMMOG00000008348	msi2a	76	83.333	Mola_mola
FBgn0260943	Rbp6	86	50.216	ENSMODG00000014790	MSI2	100	48.908	Monodelphis_domestica
FBgn0260943	Rbp6	100	81.633	ENSMALG00000000071	msi2a	93	81.633	Monopterus_albus
FBgn0260943	Rbp6	88	68.750	MGP_CAROLIEiJ_G0016948	Msi2	99	86.667	Mus_caroli
FBgn0260943	Rbp6	88	68.750	ENSMUSG00000069769	Msi2	99	86.667	Mus_musculus
FBgn0260943	Rbp6	88	68.750	MGP_PahariEiJ_G0018079	Msi2	99	86.667	Mus_pahari
FBgn0260943	Rbp6	88	68.750	MGP_SPRETEiJ_G0017795	Msi2	99	86.667	Mus_spretus
FBgn0260943	Rbp6	88	68.750	ENSMPUG00000015377	MSI2	97	57.637	Mustela_putorius_furo
FBgn0260943	Rbp6	88	68.750	ENSMLUG00000007865	MSI2	97	57.349	Myotis_lucifugus
FBgn0260943	Rbp6	88	67.808	ENSNGAG00000017807	Msi2	97	59.104	Nannospalax_galili
FBgn0260943	Rbp6	88	65.278	ENSNBRG00000014596	msi2a	79	83.333	Neolamprologus_brichardi
FBgn0260943	Rbp6	88	68.750	ENSNLEG00000008059	MSI2	94	69.953	Nomascus_leucogenys
FBgn0260943	Rbp6	88	59.441	ENSOPRG00000000872	-	64	60.510	Ochotona_princeps
FBgn0260943	Rbp6	88	67.808	ENSODEG00000011974	MSI2	97	59.104	Octodon_degus
FBgn0260943	Rbp6	59	82.979	ENSONIG00000001972	msi2a	72	82.979	Oreochromis_niloticus
FBgn0260943	Rbp6	91	67.123	ENSOANG00000005667	MSI2	69	70.259	Ornithorhynchus_anatinus
FBgn0260943	Rbp6	88	68.750	ENSOCUG00000010440	MSI2	97	57.637	Oryctolagus_cuniculus
FBgn0260943	Rbp6	90	64.626	ENSORLG00000009671	msi2a	94	53.593	Oryzias_latipes
FBgn0260943	Rbp6	90	64.626	ENSORLG00020021556	msi2a	95	56.196	Oryzias_latipes_hni
FBgn0260943	Rbp6	90	64.626	ENSORLG00015004592	msi2a	94	53.593	Oryzias_latipes_hsok
FBgn0260943	Rbp6	90	64.626	ENSOMEG00000000146	msi2a	98	53.372	Oryzias_melastigma
FBgn0260943	Rbp6	88	61.111	ENSOGAG00000005621	MSI2	99	54.467	Otolemur_garnettii
FBgn0260943	Rbp6	88	68.750	ENSPPAG00000037697	MSI2	90	71.366	Pan_paniscus
FBgn0260943	Rbp6	88	68.750	ENSPPRG00000001848	MSI2	90	71.366	Panthera_pardus
FBgn0260943	Rbp6	88	68.750	ENSPTIG00000021678	MSI2	96	58.258	Panthera_tigris_altaica
FBgn0260943	Rbp6	88	59.441	ENSPTIG00000021873	-	85	56.957	Panthera_tigris_altaica
FBgn0260943	Rbp6	88	68.750	ENSPTRG00000009437	MSI2	90	71.366	Pan_troglodytes
FBgn0260943	Rbp6	88	68.750	ENSPANG00000022319	MSI2	90	71.366	Papio_anubis
FBgn0260943	Rbp6	90	67.114	ENSPKIG00000007038	-	97	53.747	Paramormyrops_kingsleyae
FBgn0260943	Rbp6	88	67.123	ENSPSIG00000008618	MSI2	55	66.667	Pelodiscus_sinensis
FBgn0260943	Rbp6	88	65.278	ENSPMGG00000005888	msi2a	97	52.187	Periophthalmus_magnuspinnatus
FBgn0260943	Rbp6	53	86.667	ENSPEMG00000021793	-	99	86.667	Peromyscus_maniculatus_bairdii
FBgn0260943	Rbp6	88	68.056	ENSPCIG00000006063	MSI2	97	58.678	Phascolarctos_cinereus
FBgn0260943	Rbp6	50	72.340	ENSPFOG00000019337	MSI2	90	72.340	Poecilia_formosa
FBgn0260943	Rbp6	53	81.250	ENSPLAG00000000436	msi2a	70	72.519	Poecilia_latipinna
FBgn0260943	Rbp6	53	81.250	ENSPMEG00000013247	msi2a	62	81.250	Poecilia_mexicana
FBgn0260943	Rbp6	88	65.278	ENSPREG00000000881	msi2a	90	53.312	Poecilia_reticulata
FBgn0260943	Rbp6	88	62.238	ENSPPYG00000008244	-	100	50.000	Pongo_abelii
FBgn0260943	Rbp6	55	57.303	ENSPCAG00000010552	MSI2	100	48.837	Procavia_capensis
FBgn0260943	Rbp6	53	85.106	ENSPCOG00000019195	-	93	85.106	Propithecus_coquereli
FBgn0260943	Rbp6	72	75.410	ENSPVAG00000017053	MSI2	84	74.595	Pteropus_vampyrus
FBgn0260943	Rbp6	90	64.626	ENSPNYG00000018393	msi2a	95	55.840	Pundamilia_nyererei
FBgn0260943	Rbp6	88	66.667	ENSPNAG00000014957	msi2a	97	55.989	Pygocentrus_nattereri
FBgn0260943	Rbp6	88	66.667	ENSPNAG00000000844	msi2b	96	51.811	Pygocentrus_nattereri
FBgn0260943	Rbp6	88	68.750	ENSRNOG00000025338	Msi2	100	55.975	Rattus_norvegicus
FBgn0260943	Rbp6	53	86.667	ENSRROG00000034421	-	91	86.667	Rhinopithecus_roxellana
FBgn0260943	Rbp6	88	68.750	ENSSBOG00000026425	MSI2	90	71.366	Saimiri_boliviensis_boliviensis
FBgn0260943	Rbp6	88	67.123	ENSSHAG00000008672	MSI2	100	59.249	Sarcophilus_harrisii
FBgn0260943	Rbp6	90	68.456	ENSSFOG00015021687	-	97	56.657	Scleropages_formosus
FBgn0260943	Rbp6	88	66.667	ENSSFOG00015012168	msi2b	56	57.741	Scleropages_formosus
FBgn0260943	Rbp6	90	64.626	ENSSMAG00000018484	msi2a	95	56.410	Scophthalmus_maximus
FBgn0260943	Rbp6	88	62.500	ENSSDUG00000021968	-	92	77.143	Seriola_dumerili
FBgn0260943	Rbp6	88	65.278	ENSSDUG00000014507	msi2a	68	86.667	Seriola_dumerili
FBgn0260943	Rbp6	88	65.278	ENSSLDG00000017172	msi2a	97	52.478	Seriola_lalandi_dorsalis
FBgn0260943	Rbp6	53	79.630	ENSSPUG00000000913	-	90	75.658	Sphenodon_punctatus
FBgn0260943	Rbp6	88	65.278	ENSSPAG00000017793	msi2a	89	55.692	Stegastes_partitus
FBgn0260943	Rbp6	90	67.347	ENSSSCG00000038505	MSI2	97	59.654	Sus_scrofa
FBgn0260943	Rbp6	86	50.216	ENSTGUG00000008452	MSI2	100	48.908	Taeniopygia_guttata
FBgn0260943	Rbp6	88	65.278	ENSTRUG00000021248	msi2a	95	51.676	Takifugu_rubripes
FBgn0260943	Rbp6	88	56.944	ENSTBEG00000001241	MSI2	67	58.850	Tupaia_belangeri
FBgn0260943	Rbp6	88	68.750	ENSTTRG00000002189	MSI2	100	52.518	Tursiops_truncatus
FBgn0260943	Rbp6	90	67.347	ENSUAMG00000000700	MSI2	90	71.366	Ursus_americanus
FBgn0260943	Rbp6	90	67.347	ENSUMAG00000000505	MSI2	96	55.333	Ursus_maritimus
FBgn0260943	Rbp6	70	53.509	ENSVPAG00000006837	-	62	61.749	Vicugna_pacos
FBgn0260943	Rbp6	90	67.347	ENSVVUG00000011783	MSI2	97	59.104	Vulpes_vulpes
FBgn0260943	Rbp6	90	64.189	ENSXCOG00000006113	msi2a	96	51.832	Xiphophorus_couchianus
FBgn0260943	Rbp6	90	64.626	ENSXMAG00000000608	msi2a	95	56.410	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003727	single-stranded RNA binding	-	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0005844	polysome	21873635.	IBA	Component
GO:0005844	polysome	-	ISS	Component
GO:0008266	poly(U) RNA binding	-	ISS	Function
GO:0048864	stem cell development	-	ISS	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component