EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0260944 (Gene tree)
Gene ID: 41294
Gene Symbol: Rbp1
Alias: -
Full Name: RNA-binding protein 1
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 2083 bases
Position: chr3R:10784383-10786465
Accession: FBgn0260944
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0081752	RRM_1	PF00076.22	7.6e-17	1	1
FBpp0081754	RRM_1	PF00076.22	8.6e-17	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0082275	-	773	-	FBpp0081752	135 (aa)	-	A0A1B2AJY5
FBtr0082277	-	1528	-	FBpp0081754	144 (aa)	-	Q02427

Gene Model

Click here to download FBgn0260944's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0260944's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0260944	Rbp1	59	37.975	FBgn0004587	B52	51	38.889
FBgn0260944	Rbp1	60	95.062	FBgn0030479	Rbp1-like	51	95.062

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0260944	Rbp1	67	66.667	ENSG00000112081	SRSF3	73	69.565	Homo_sapiens
FBgn0260944	Rbp1	64	65.517	ENSG00000115875	SRSF7	61	66.667	Homo_sapiens
FBgn0260944	Rbp1	98	57.463	ENSACIG00000016419	-	51	67.949	Amphilophus_citrinellus
FBgn0260944	Rbp1	64	62.069	ENSACIG00000009890	srsf7b	62	62.963	Amphilophus_citrinellus
FBgn0260944	Rbp1	74	53.571	ENSAOCG00000021499	srsf7b	53	61.972	Amphiprion_ocellaris
FBgn0260944	Rbp1	66	66.292	ENSAPEG00000013125	-	62	67.949	Amphiprion_percula
FBgn0260944	Rbp1	74	53.571	ENSAPEG00000018802	srsf7b	53	61.972	Amphiprion_percula
FBgn0260944	Rbp1	66	66.292	ENSAPEG00000014876	srsf3b	62	67.949	Amphiprion_percula
FBgn0260944	Rbp1	66	66.292	ENSATEG00000006193	srsf3b	52	67.949	Anabas_testudineus
FBgn0260944	Rbp1	62	60.714	ENSANAG00000035091	-	64	66.667	Aotus_nancymaae
FBgn0260944	Rbp1	64	65.517	ENSANAG00000019399	SRSF7	59	66.667	Aotus_nancymaae
FBgn0260944	Rbp1	67	66.667	ENSANAG00000033233	-	59	71.233	Aotus_nancymaae
FBgn0260944	Rbp1	64	65.517	ENSBTAG00000014891	SRSF7	59	66.667	Bos_taurus
FBgn0260944	Rbp1	64	65.517	ENSCJAG00000015185	SRSF7	59	66.667	Callithrix_jacchus
FBgn0260944	Rbp1	67	66.667	ENSCJAG00000016062	-	59	71.233	Callithrix_jacchus
FBgn0260944	Rbp1	64	65.517	ENSCAFG00020022807	SRSF7	59	66.667	Canis_lupus_dingo
FBgn0260944	Rbp1	64	65.517	ENSCHIG00000019180	SRSF7	59	66.667	Capra_hircus
FBgn0260944	Rbp1	67	66.667	ENSCHIG00000009659	-	59	71.233	Capra_hircus
FBgn0260944	Rbp1	74	50.000	ENSCHIG00000019854	-	67	60.274	Capra_hircus
FBgn0260944	Rbp1	67	66.667	ENSTSYG00000025880	SRSF3	59	71.233	Carlito_syrichta
FBgn0260944	Rbp1	64	65.517	ENSTSYG00000012273	SRSF7	59	66.667	Carlito_syrichta
FBgn0260944	Rbp1	64	65.517	ENSCPOG00000033318	SRSF7	59	66.667	Cavia_porcellus
FBgn0260944	Rbp1	67	66.667	ENSCCAG00000032244	SRSF3	59	71.233	Cebus_capucinus
FBgn0260944	Rbp1	67	66.667	ENSCATG00000031850	SRSF3	73	69.565	Cercocebus_atys
FBgn0260944	Rbp1	64	65.517	ENSCATG00000031728	SRSF7	59	66.667	Cercocebus_atys
FBgn0260944	Rbp1	64	65.517	ENSCLAG00000005235	SRSF7	59	66.667	Chinchilla_lanigera
FBgn0260944	Rbp1	64	64.368	ENSCPBG00000018252	-	59	65.432	Chrysemys_picta_bellii
FBgn0260944	Rbp1	64	65.517	ENSCPBG00000018247	-	59	66.667	Chrysemys_picta_bellii
FBgn0260944	Rbp1	64	65.517	ENSCANG00000040757	SRSF7	59	66.667	Colobus_angolensis_palliatus
FBgn0260944	Rbp1	67	66.667	ENSCANG00000039617	SRSF3	59	71.233	Colobus_angolensis_palliatus
FBgn0260944	Rbp1	67	66.667	ENSCGRG00001014666	-	59	71.233	Cricetulus_griseus_chok1gshd
FBgn0260944	Rbp1	55	68.919	ENSCGRG00001010936	-	77	68.493	Cricetulus_griseus_chok1gshd
FBgn0260944	Rbp1	56	71.053	ENSCGRG00000005929	Srsf7	51	72.857	Cricetulus_griseus_crigri
FBgn0260944	Rbp1	55	68.919	ENSCGRG00000017956	-	52	68.493	Cricetulus_griseus_crigri
FBgn0260944	Rbp1	67	63.333	ENSCGRG00000005286	-	52	68.493	Cricetulus_griseus_crigri
FBgn0260944	Rbp1	57	71.429	ENSCSEG00000006378	srsf7a	59	66.265	Cynoglossus_semilaevis
FBgn0260944	Rbp1	66	66.292	ENSCSEG00000001311	-	62	67.949	Cynoglossus_semilaevis
FBgn0260944	Rbp1	71	63.542	ENSCSEG00000002271	srsf3b	59	67.949	Cynoglossus_semilaevis
FBgn0260944	Rbp1	70	64.211	ENSCVAG00000003851	srsf3b	62	67.949	Cyprinodon_variegatus
FBgn0260944	Rbp1	66	66.292	ENSCVAG00000009865	-	52	67.949	Cyprinodon_variegatus
FBgn0260944	Rbp1	65	69.318	ENSDARG00000025397	srsf3a	57	71.429	Danio_rerio
FBgn0260944	Rbp1	56	68.421	ENSDARG00000101057	srsf7b	53	62.963	Danio_rerio
FBgn0260944	Rbp1	66	66.292	ENSDARG00000059360	srsf3b	63	67.949	Danio_rerio
FBgn0260944	Rbp1	61	67.073	ENSDARG00000035325	srsf7a	81	72.881	Danio_rerio
FBgn0260944	Rbp1	65	69.318	ENSDARG00000100815	srsf3a	57	71.429	Danio_rerio
FBgn0260944	Rbp1	64	65.517	ENSDNOG00000007821	SRSF7	59	66.667	Dasypus_novemcinctus
FBgn0260944	Rbp1	64	65.517	ENSEASG00005005547	SRSF7	59	66.667	Equus_asinus_asinus
FBgn0260944	Rbp1	56	69.737	ENSELUG00000018155	srsf7b	51	71.429	Esox_lucius
FBgn0260944	Rbp1	59	67.500	ENSELUG00000016922	srsf7a	50	69.565	Esox_lucius
FBgn0260944	Rbp1	53	58.333	ENSFCAG00000028644	-	56	58.571	Felis_catus
FBgn0260944	Rbp1	64	65.517	ENSFDAG00000016030	-	59	66.667	Fukomys_damarensis
FBgn0260944	Rbp1	83	59.821	ENSFHEG00000014610	-	62	67.949	Fundulus_heteroclitus
FBgn0260944	Rbp1	70	64.211	ENSFHEG00000005368	srsf3b	62	67.949	Fundulus_heteroclitus
FBgn0260944	Rbp1	62	69.048	ENSGMOG00000000944	-	68	71.233	Gadus_morhua
FBgn0260944	Rbp1	71	63.542	ENSGMOG00000008043	SRSF3	55	66.667	Gadus_morhua
FBgn0260944	Rbp1	64	64.368	ENSGALG00000033120	SRSF7	59	65.432	Gallus_gallus
FBgn0260944	Rbp1	54	72.603	ENSGAFG00000008856	srsf7b	50	73.913	Gambusia_affinis
FBgn0260944	Rbp1	70	64.211	ENSGAFG00000021603	srsf3b	64	67.949	Gambusia_affinis
FBgn0260944	Rbp1	98	59.398	ENSGAFG00000010130	-	62	67.949	Gambusia_affinis
FBgn0260944	Rbp1	73	61.224	ENSGACG00000001473	-	66	64.198	Gasterosteus_aculeatus
FBgn0260944	Rbp1	64	64.368	ENSGAGG00000003553	SRSF7	59	65.432	Gopherus_agassizii
FBgn0260944	Rbp1	64	64.368	ENSGAGG00000016294	-	59	65.432	Gopherus_agassizii
FBgn0260944	Rbp1	64	65.517	ENSGGOG00000014620	SRSF7	59	66.667	Gorilla_gorilla
FBgn0260944	Rbp1	67	66.667	ENSGGOG00000017186	SRSF3	59	71.233	Gorilla_gorilla
FBgn0260944	Rbp1	61	59.036	ENSGGOG00000041151	-	55	63.077	Gorilla_gorilla
FBgn0260944	Rbp1	66	66.292	ENSHBUG00000003073	srsf3b	62	67.949	Haplochromis_burtoni
FBgn0260944	Rbp1	55	63.514	ENSHGLG00000010182	-	86	64.384	Heterocephalus_glaber_female
FBgn0260944	Rbp1	67	51.579	ENSHGLG00000005295	-	62	53.571	Heterocephalus_glaber_female
FBgn0260944	Rbp1	67	51.579	ENSHGLG00100014570	-	62	53.571	Heterocephalus_glaber_male
FBgn0260944	Rbp1	55	62.162	ENSHGLG00100019251	-	86	63.014	Heterocephalus_glaber_male
FBgn0260944	Rbp1	64	65.517	ENSHGLG00100006124	-	59	66.667	Heterocephalus_glaber_male
FBgn0260944	Rbp1	66	66.292	ENSHCOG00000000149	srsf3b	53	67.949	Hippocampus_comes
FBgn0260944	Rbp1	66	66.292	ENSIPUG00000017382	srsf3	61	67.949	Ictalurus_punctatus
FBgn0260944	Rbp1	64	65.517	ENSSTOG00000004389	SRSF7	59	66.667	Ictidomys_tridecemlineatus
FBgn0260944	Rbp1	82	52.212	ENSJJAG00000020230	-	51	62.500	Jaculus_jaculus
FBgn0260944	Rbp1	70	63.830	ENSLBEG00000000877	-	61	67.532	Labrus_bergylta
FBgn0260944	Rbp1	66	65.169	ENSLBEG00000013364	srsf3b	67	66.667	Labrus_bergylta
FBgn0260944	Rbp1	61	67.470	ENSLACG00000008131	SRSF3	79	51.562	Latimeria_chalumnae
FBgn0260944	Rbp1	64	65.517	ENSLAFG00000005666	SRSF7	51	66.667	Loxodonta_africana
FBgn0260944	Rbp1	67	66.667	ENSMFAG00000002707	SRSF3	73	69.565	Macaca_fascicularis
FBgn0260944	Rbp1	64	65.517	ENSMFAG00000001980	SRSF7	59	66.667	Macaca_fascicularis
FBgn0260944	Rbp1	67	66.667	ENSMMUG00000014306	SRSF3	73	69.565	Macaca_mulatta
FBgn0260944	Rbp1	67	66.667	ENSMNEG00000038420	SRSF3	73	69.565	Macaca_nemestrina
FBgn0260944	Rbp1	64	65.517	ENSMLEG00000038852	SRSF7	59	66.667	Mandrillus_leucophaeus
FBgn0260944	Rbp1	66	66.292	ENSMAMG00000023637	-	63	67.949	Mastacembelus_armatus
FBgn0260944	Rbp1	66	66.292	ENSMZEG00005016010	-	50	67.949	Maylandia_zebra
FBgn0260944	Rbp1	67	66.667	ENSMICG00000029154	-	59	71.233	Microcebus_murinus
FBgn0260944	Rbp1	84	55.752	ENSMICG00000004674	-	52	71.212	Microcebus_murinus
FBgn0260944	Rbp1	76	60.784	ENSMOCG00000014206	-	50	71.233	Microtus_ochrogaster
FBgn0260944	Rbp1	66	66.292	ENSMALG00000021269	-	63	67.949	Monopterus_albus
FBgn0260944	Rbp1	64	65.517	ENSMUSG00000024097	Srsf7	59	66.667	Mus_musculus
FBgn0260944	Rbp1	67	66.667	ENSMUSG00000071172	Srsf3	59	71.233	Mus_musculus
FBgn0260944	Rbp1	59	65.000	ENSNLEG00000030606	-	56	62.295	Nomascus_leucogenys
FBgn0260944	Rbp1	67	66.667	ENSNLEG00000010737	SRSF3	73	69.565	Nomascus_leucogenys
FBgn0260944	Rbp1	64	65.517	ENSNLEG00000016349	SRSF7	59	66.667	Nomascus_leucogenys
FBgn0260944	Rbp1	68	65.217	ENSORLG00020011157	-	61	67.949	Oryzias_latipes_hni
FBgn0260944	Rbp1	66	66.292	ENSOMEG00000014893	srsf3b	52	67.949	Oryzias_melastigma
FBgn0260944	Rbp1	67	66.667	ENSPPAG00000037453	SRSF3	73	69.565	Pan_paniscus
FBgn0260944	Rbp1	67	66.667	ENSPTRG00000018106	SRSF3	73	69.565	Pan_troglodytes
FBgn0260944	Rbp1	67	66.667	ENSPANG00000018768	-	73	69.565	Papio_anubis
FBgn0260944	Rbp1	64	63.218	ENSPKIG00000022669	SRSF7	55	64.198	Paramormyrops_kingsleyae
FBgn0260944	Rbp1	70	63.158	ENSPMGG00000010209	-	50	67.949	Periophthalmus_magnuspinnatus
FBgn0260944	Rbp1	66	67.416	ENSPMGG00000004040	srsf3b	62	67.949	Periophthalmus_magnuspinnatus
FBgn0260944	Rbp1	59	70.000	ENSPMGG00000021890	srsf7a	52	71.831	Periophthalmus_magnuspinnatus
FBgn0260944	Rbp1	56	66.667	ENSPEMG00000024099	-	50	68.493	Peromyscus_maniculatus_bairdii
FBgn0260944	Rbp1	64	65.517	ENSPCIG00000020694	-	59	66.667	Phascolarctos_cinereus
FBgn0260944	Rbp1	52	62.857	ENSPCIG00000026581	-	75	62.857	Phascolarctos_cinereus
FBgn0260944	Rbp1	56	68.421	ENSPCIG00000020726	-	60	62.963	Phascolarctos_cinereus
FBgn0260944	Rbp1	66	66.292	ENSPFOG00000018005	-	62	67.949	Poecilia_formosa
FBgn0260944	Rbp1	70	64.211	ENSPFOG00000000552	srsf3b	62	67.949	Poecilia_formosa
FBgn0260944	Rbp1	70	64.211	ENSPLAG00000003715	srsf3b	62	67.949	Poecilia_latipinna
FBgn0260944	Rbp1	66	66.292	ENSPMEG00000012960	-	62	67.949	Poecilia_mexicana
FBgn0260944	Rbp1	70	64.211	ENSPMEG00000001983	srsf3b	62	67.949	Poecilia_mexicana
FBgn0260944	Rbp1	70	64.211	ENSPREG00000004340	srsf3b	62	67.949	Poecilia_reticulata
FBgn0260944	Rbp1	57	71.429	ENSPREG00000020685	srsf7a	56	71.831	Poecilia_reticulata
FBgn0260944	Rbp1	66	67.416	ENSPREG00000002610	-	51	67.949	Poecilia_reticulata
FBgn0260944	Rbp1	67	66.667	ENSPPYG00000016548	-	59	71.233	Pongo_abelii
FBgn0260944	Rbp1	67	66.667	ENSPCOG00000026280	SRSF3	59	71.233	Propithecus_coquereli
FBgn0260944	Rbp1	66	67.416	ENSPNYG00000013747	-	50	69.231	Pundamilia_nyererei
FBgn0260944	Rbp1	66	66.292	ENSPNYG00000007657	srsf3b	58	67.949	Pundamilia_nyererei
FBgn0260944	Rbp1	70	67.368	ENSPNAG00000012262	srsf3a	61	70.513	Pygocentrus_nattereri
FBgn0260944	Rbp1	67	66.667	ENSRNOG00000000520	Srsf3	59	71.233	Rattus_norvegicus
FBgn0260944	Rbp1	67	66.667	ENSRBIG00000036836	SRSF3	59	71.233	Rhinopithecus_bieti
FBgn0260944	Rbp1	64	65.517	ENSRROG00000005080	SRSF7	59	66.667	Rhinopithecus_roxellana
FBgn0260944	Rbp1	67	66.667	ENSRROG00000044486	SRSF3	59	71.233	Rhinopithecus_roxellana
FBgn0260944	Rbp1	62	63.095	ENSSBOG00000027102	-	52	65.753	Saimiri_boliviensis_boliviensis
FBgn0260944	Rbp1	64	65.517	ENSSBOG00000025074	SRSF7	59	66.667	Saimiri_boliviensis_boliviensis
FBgn0260944	Rbp1	67	66.667	ENSSBOG00000022192	SRSF3	59	71.233	Saimiri_boliviensis_boliviensis
FBgn0260944	Rbp1	56	71.053	ENSSHAG00000015970	-	50	72.857	Sarcophilus_harrisii
FBgn0260944	Rbp1	66	65.169	ENSSMAG00000020812	-	62	66.667	Scophthalmus_maximus
FBgn0260944	Rbp1	64	63.218	ENSSDUG00000021338	srsf7b	57	64.198	Seriola_dumerili
FBgn0260944	Rbp1	66	66.292	ENSSDUG00000009243	srsf3b	62	67.949	Seriola_dumerili
FBgn0260944	Rbp1	66	66.292	ENSSLDG00000022631	srsf3b	62	67.949	Seriola_lalandi_dorsalis
FBgn0260944	Rbp1	66	66.292	ENSSPAG00000017902	-	51	67.949	Stegastes_partitus
FBgn0260944	Rbp1	59	70.000	ENSSPAG00000022192	srsf7a	57	71.831	Stegastes_partitus
FBgn0260944	Rbp1	56	72.368	ENSSPAG00000017204	srsf7b	57	66.667	Stegastes_partitus
FBgn0260944	Rbp1	64	65.517	ENSSSCG00000008484	SRSF7	59	66.667	Sus_scrofa
FBgn0260944	Rbp1	67	65.934	ENSTRUG00000023965	-	64	67.500	Takifugu_rubripes
FBgn0260944	Rbp1	64	65.517	ENSUAMG00000025051	-	59	66.667	Ursus_americanus
FBgn0260944	Rbp1	67	54.945	ENSUAMG00000011426	-	59	71.930	Ursus_americanus
FBgn0260944	Rbp1	67	54.945	ENSUMAG00000023107	-	59	71.930	Ursus_maritimus
FBgn0260944	Rbp1	64	65.517	ENSVVUG00000018767	-	59	66.667	Vulpes_vulpes
FBgn0260944	Rbp1	53	54.795	ENSVVUG00000006092	-	67	55.714	Vulpes_vulpes
FBgn0260944	Rbp1	57	71.429	ENSXCOG00000009381	srsf7a	56	71.831	Xiphophorus_couchianus
FBgn0260944	Rbp1	62	65.476	ENSXCOG00000010843	srsf7b	54	66.250	Xiphophorus_couchianus
FBgn0260944	Rbp1	70	64.211	ENSXMAG00000001097	srsf3b	62	67.949	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	25414008.	IMP	Process
GO:0001178	regulation of transcriptional start site selection at RNA polymerase II promoter	25414008.	IMP	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	25414008.	IDA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	1340470.12134081.	IDA	Component
GO:0008380	RNA splicing	15961996.	IMP	Process
GO:0010468	regulation of gene expression	25414008.	IMP	Process
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0031440	regulation of mRNA 3'-end processing	25414008.	IMP	Process
GO:0035327	transcriptionally active chromatin	1340470.	IDA	Component
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process
GO:0045292	mRNA cis splicing, via spliceosome	1340470.	IDA	Process