EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0261067 (Gene tree)
Gene ID: 37413
Gene Symbol: LSm1
Alias: -
Full Name: Like Sm 1
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 704 bases
Position: chr2R:21169969-21170672
Accession: FBgn0261067
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0071553	LSM	PF01423.22	7e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0071628	-	588	-	FBpp0071553	137 (aa)	-	Q4V6D7

Gene Model

Click here to download FBgn0261067's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0261067's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0261067	LSm1	56	30.769	FBgn0035271	CG2021	82	30.769

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0261067	LSm1	91	63.710	ENSG00000175324	LSM1	93	63.710	Homo_sapiens
FBgn0261067	LSm1	91	59.677	ENSAPOG00000010833	lsm1	93	59.677	Acanthochromis_polyacanthus
FBgn0261067	LSm1	91	63.710	ENSAMEG00000011141	LSM1	93	63.710	Ailuropoda_melanoleuca
FBgn0261067	LSm1	56	72.727	ENSACIG00000019593	lsm1	64	72.727	Amphilophus_citrinellus
FBgn0261067	LSm1	91	59.677	ENSAOCG00000017096	lsm1	93	59.677	Amphiprion_ocellaris
FBgn0261067	LSm1	91	59.677	ENSAOCG00000017997	-	93	59.677	Amphiprion_ocellaris
FBgn0261067	LSm1	91	59.677	ENSAPEG00000011669	lsm1	93	59.677	Amphiprion_percula
FBgn0261067	LSm1	91	58.871	ENSATEG00000022266	lsm1	93	58.871	Anabas_testudineus
FBgn0261067	LSm1	91	63.710	ENSANAG00000027785	LSM1	93	63.710	Aotus_nancymaae
FBgn0261067	LSm1	91	58.871	ENSACLG00000011400	lsm1	93	58.871	Astatotilapia_calliptera
FBgn0261067	LSm1	97	57.895	ENSAMXG00000005441	lsm1	100	57.895	Astyanax_mexicanus
FBgn0261067	LSm1	91	63.710	ENSBTAG00000001612	LSM1	93	63.710	Bos_taurus
FBgn0261067	LSm1	59	54.878	WBGene00003076	lsm-1	66	54.878	Caenorhabditis_elegans
FBgn0261067	LSm1	91	63.710	ENSCJAG00000048015	LSM1	93	63.710	Callithrix_jacchus
FBgn0261067	LSm1	91	63.710	ENSCAFG00000006113	LSM1	93	63.710	Canis_familiaris
FBgn0261067	LSm1	91	63.710	ENSCAFG00020001822	LSM1	93	63.710	Canis_lupus_dingo
FBgn0261067	LSm1	91	63.710	ENSCHIG00000013194	LSM1	93	63.710	Capra_hircus
FBgn0261067	LSm1	91	63.710	ENSTSYG00000010394	LSM1	93	63.710	Carlito_syrichta
FBgn0261067	LSm1	91	63.710	ENSCPOG00000032671	LSM1	93	63.710	Cavia_porcellus
FBgn0261067	LSm1	91	63.710	ENSCCAG00000037171	LSM1	93	63.710	Cebus_capucinus
FBgn0261067	LSm1	91	63.710	ENSCATG00000020377	LSM1	93	63.710	Cercocebus_atys
FBgn0261067	LSm1	91	65.323	ENSCLAG00000001137	LSM1	93	65.323	Chinchilla_lanigera
FBgn0261067	LSm1	91	63.710	ENSCSAG00000015485	LSM1	93	63.710	Chlorocebus_sabaeus
FBgn0261067	LSm1	91	64.516	ENSCHOG00000006030	LSM1	93	64.516	Choloepus_hoffmanni
FBgn0261067	LSm1	83	65.789	ENSCPBG00000006569	LSM1	77	65.789	Chrysemys_picta_bellii
FBgn0261067	LSm1	89	63.115	ENSCING00000013536	-	92	63.115	Ciona_intestinalis
FBgn0261067	LSm1	91	63.710	ENSCANG00000019173	LSM1	93	63.710	Colobus_angolensis_palliatus
FBgn0261067	LSm1	91	64.516	ENSCGRG00001024560	-	93	64.516	Cricetulus_griseus_chok1gshd
FBgn0261067	LSm1	75	60.185	ENSCGRG00001002259	-	81	62.366	Cricetulus_griseus_chok1gshd
FBgn0261067	LSm1	75	60.185	ENSCGRG00000013603	-	81	62.366	Cricetulus_griseus_crigri
FBgn0261067	LSm1	91	64.516	ENSCGRG00000006554	-	93	64.516	Cricetulus_griseus_crigri
FBgn0261067	LSm1	91	58.871	ENSCSEG00000008319	lsm1	86	58.871	Cynoglossus_semilaevis
FBgn0261067	LSm1	91	59.677	ENSCSEG00000010570	lsm1	86	59.677	Cynoglossus_semilaevis
FBgn0261067	LSm1	91	58.065	ENSCVAG00000003871	lsm1	93	58.065	Cyprinodon_variegatus
FBgn0261067	LSm1	97	59.398	ENSDARG00000043177	lsm1	100	59.398	Danio_rerio
FBgn0261067	LSm1	91	62.903	ENSDNOG00000032911	-	93	62.903	Dasypus_novemcinctus
FBgn0261067	LSm1	87	47.899	ENSDNOG00000046620	-	100	47.899	Dasypus_novemcinctus
FBgn0261067	LSm1	91	59.677	ENSDNOG00000030989	-	93	59.677	Dasypus_novemcinctus
FBgn0261067	LSm1	91	63.710	ENSDNOG00000046387	-	93	63.710	Dasypus_novemcinctus
FBgn0261067	LSm1	91	63.710	ENSDORG00000028172	Lsm1	93	63.710	Dipodomys_ordii
FBgn0261067	LSm1	91	64.516	ENSEASG00005016677	LSM1	93	64.516	Equus_asinus_asinus
FBgn0261067	LSm1	91	64.516	ENSECAG00000010461	LSM1	93	64.516	Equus_caballus
FBgn0261067	LSm1	70	65.979	ENSEEUG00000015181	LSM1	97	65.979	Erinaceus_europaeus
FBgn0261067	LSm1	91	58.871	ENSELUG00000002322	lsm1	93	58.871	Esox_lucius
FBgn0261067	LSm1	97	59.398	ENSELUG00000023374	lsm1	100	59.398	Esox_lucius
FBgn0261067	LSm1	91	63.710	ENSFCAG00000039335	LSM1	93	63.710	Felis_catus
FBgn0261067	LSm1	80	67.890	ENSFALG00000006723	LSM1	92	67.890	Ficedula_albicollis
FBgn0261067	LSm1	91	63.710	ENSFDAG00000007658	LSM1	93	63.710	Fukomys_damarensis
FBgn0261067	LSm1	91	58.065	ENSFHEG00000009556	lsm1	93	58.065	Fundulus_heteroclitus
FBgn0261067	LSm1	91	57.258	ENSGMOG00000016651	lsm1	91	57.258	Gadus_morhua
FBgn0261067	LSm1	91	64.516	ENSGALG00000003245	LSM1	93	64.516	Gallus_gallus
FBgn0261067	LSm1	91	58.065	ENSGAFG00000011355	lsm1	93	58.065	Gambusia_affinis
FBgn0261067	LSm1	91	59.677	ENSGACG00000011763	lsm1	91	59.677	Gasterosteus_aculeatus
FBgn0261067	LSm1	91	65.323	ENSGAGG00000024065	LSM1	93	65.323	Gopherus_agassizii
FBgn0261067	LSm1	91	63.710	ENSGGOG00000022658	LSM1	93	63.710	Gorilla_gorilla
FBgn0261067	LSm1	91	58.871	ENSHBUG00000010897	lsm1	93	58.871	Haplochromis_burtoni
FBgn0261067	LSm1	91	63.710	ENSHGLG00000005711	LSM1	93	63.710	Heterocephalus_glaber_female
FBgn0261067	LSm1	74	57.843	ENSHGLG00000017574	-	91	57.843	Heterocephalus_glaber_female
FBgn0261067	LSm1	74	57.843	ENSHGLG00100012152	-	91	57.843	Heterocephalus_glaber_male
FBgn0261067	LSm1	91	63.710	ENSHGLG00100017660	LSM1	93	63.710	Heterocephalus_glaber_male
FBgn0261067	LSm1	91	59.677	ENSHCOG00000017233	lsm1	93	59.677	Hippocampus_comes
FBgn0261067	LSm1	97	58.647	ENSIPUG00000002312	LSM1	100	58.647	Ictalurus_punctatus
FBgn0261067	LSm1	58	72.500	ENSSTOG00000026870	LSM1	98	72.500	Ictidomys_tridecemlineatus
FBgn0261067	LSm1	91	63.710	ENSJJAG00000014605	-	93	63.710	Jaculus_jaculus
FBgn0261067	LSm1	91	58.871	ENSKMAG00000003016	lsm1	93	58.871	Kryptolebias_marmoratus
FBgn0261067	LSm1	91	58.871	ENSLBEG00000022352	lsm1	93	58.871	Labrus_bergylta
FBgn0261067	LSm1	80	66.055	ENSLACG00000010947	LSM1	90	66.055	Latimeria_chalumnae
FBgn0261067	LSm1	91	64.516	ENSLOCG00000015149	lsm1	93	64.516	Lepisosteus_oculatus
FBgn0261067	LSm1	91	63.710	ENSLAFG00000003534	LSM1	93	63.710	Loxodonta_africana
FBgn0261067	LSm1	91	63.710	ENSMFAG00000032661	LSM1	93	63.710	Macaca_fascicularis
FBgn0261067	LSm1	91	63.710	ENSMLEG00000034535	LSM1	93	63.710	Mandrillus_leucophaeus
FBgn0261067	LSm1	91	58.871	ENSMAMG00000007464	lsm1	93	58.871	Mastacembelus_armatus
FBgn0261067	LSm1	91	58.871	ENSMZEG00005010321	lsm1	93	58.871	Maylandia_zebra
FBgn0261067	LSm1	91	63.710	ENSMGAG00000002125	LSM1	93	63.710	Meleagris_gallopavo
FBgn0261067	LSm1	91	63.710	ENSMICG00000030726	LSM1	93	63.710	Microcebus_murinus
FBgn0261067	LSm1	91	64.516	ENSMOCG00000022817	Lsm1	93	64.516	Microtus_ochrogaster
FBgn0261067	LSm1	91	59.677	ENSMMOG00000015466	lsm1	93	59.677	Mola_mola
FBgn0261067	LSm1	91	66.129	ENSMODG00000010732	-	93	66.129	Monodelphis_domestica
FBgn0261067	LSm1	56	72.727	ENSMALG00000001478	lsm1	82	72.727	Monopterus_albus
FBgn0261067	LSm1	91	62.903	MGP_CAROLIEiJ_G0030930	Lsm1	93	62.903	Mus_caroli
FBgn0261067	LSm1	91	62.903	ENSMUSG00000037296	Lsm1	91	66.667	Mus_musculus
FBgn0261067	LSm1	91	62.903	MGP_PahariEiJ_G0021400	Lsm1	93	62.903	Mus_pahari
FBgn0261067	LSm1	91	62.903	MGP_SPRETEiJ_G0032049	Lsm1	93	62.903	Mus_spretus
FBgn0261067	LSm1	91	64.516	ENSMPUG00000009883	LSM1	93	64.516	Mustela_putorius_furo
FBgn0261067	LSm1	91	63.710	ENSMLUG00000003734	LSM1	93	63.710	Myotis_lucifugus
FBgn0261067	LSm1	91	63.710	ENSNGAG00000003753	Lsm1	93	63.710	Nannospalax_galili
FBgn0261067	LSm1	56	72.727	ENSNBRG00000017370	lsm1	66	72.727	Neolamprologus_brichardi
FBgn0261067	LSm1	91	63.710	ENSNLEG00000029390	LSM1	93	63.710	Nomascus_leucogenys
FBgn0261067	LSm1	91	66.129	ENSMEUG00000014077	LSM1	93	66.129	Notamacropus_eugenii
FBgn0261067	LSm1	79	67.593	ENSOPRG00000000333	LSM1	92	67.593	Ochotona_princeps
FBgn0261067	LSm1	91	63.710	ENSODEG00000004834	LSM1	93	63.710	Octodon_degus
FBgn0261067	LSm1	91	58.871	ENSONIG00000010782	lsm1	93	58.871	Oreochromis_niloticus
FBgn0261067	LSm1	91	66.129	ENSOANG00000003256	LSM1	93	66.129	Ornithorhynchus_anatinus
FBgn0261067	LSm1	91	63.710	ENSOCUG00000015399	LSM1	93	63.710	Oryctolagus_cuniculus
FBgn0261067	LSm1	91	59.677	ENSORLG00000030288	lsm1	93	59.677	Oryzias_latipes
FBgn0261067	LSm1	91	59.677	ENSORLG00020003941	lsm1	93	59.677	Oryzias_latipes_hni
FBgn0261067	LSm1	91	59.677	ENSORLG00020006213	-	81	59.677	Oryzias_latipes_hni
FBgn0261067	LSm1	91	59.677	ENSORLG00015018350	lsm1	93	59.677	Oryzias_latipes_hsok
FBgn0261067	LSm1	91	59.677	ENSOMEG00000012454	lsm1	93	59.677	Oryzias_melastigma
FBgn0261067	LSm1	91	63.710	ENSOGAG00000015161	LSM1	93	63.710	Otolemur_garnettii
FBgn0261067	LSm1	91	63.710	ENSOARG00000001317	LSM1	93	63.710	Ovis_aries
FBgn0261067	LSm1	91	63.710	ENSPPAG00000032279	LSM1	93	63.710	Pan_paniscus
FBgn0261067	LSm1	91	63.710	ENSPPRG00000014172	-	93	63.710	Panthera_pardus
FBgn0261067	LSm1	91	63.710	ENSPTIG00000010289	LSM1	93	63.710	Panthera_tigris_altaica
FBgn0261067	LSm1	91	63.710	ENSPTRG00000020169	LSM1	93	63.710	Pan_troglodytes
FBgn0261067	LSm1	91	63.710	ENSPANG00000008814	LSM1	93	63.710	Papio_anubis
FBgn0261067	LSm1	91	62.903	ENSPKIG00000001839	lsm1	93	62.903	Paramormyrops_kingsleyae
FBgn0261067	LSm1	97	57.971	ENSPKIG00000019409	LSM1	93	63.710	Paramormyrops_kingsleyae
FBgn0261067	LSm1	80	67.890	ENSPSIG00000012563	LSM1	84	67.890	Pelodiscus_sinensis
FBgn0261067	LSm1	56	72.727	ENSPMGG00000022999	lsm1	73	72.727	Periophthalmus_magnuspinnatus
FBgn0261067	LSm1	82	62.832	ENSPMAG00000002671	lsm1	100	62.832	Petromyzon_marinus
FBgn0261067	LSm1	91	66.935	ENSPCIG00000008880	LSM1	93	66.935	Phascolarctos_cinereus
FBgn0261067	LSm1	91	58.065	ENSPFOG00000016029	lsm1	93	58.065	Poecilia_formosa
FBgn0261067	LSm1	91	58.065	ENSPLAG00000007879	lsm1	93	58.065	Poecilia_latipinna
FBgn0261067	LSm1	91	58.065	ENSPMEG00000023550	lsm1	93	58.065	Poecilia_mexicana
FBgn0261067	LSm1	91	58.065	ENSPREG00000009574	lsm1	93	58.065	Poecilia_reticulata
FBgn0261067	LSm1	91	63.710	ENSPPYG00000018521	LSM1	93	63.710	Pongo_abelii
FBgn0261067	LSm1	91	63.710	ENSPCOG00000020901	-	93	63.710	Propithecus_coquereli
FBgn0261067	LSm1	91	63.710	ENSPVAG00000006016	LSM1	93	63.710	Pteropus_vampyrus
FBgn0261067	LSm1	91	58.871	ENSPNYG00000018067	lsm1	93	58.871	Pundamilia_nyererei
FBgn0261067	LSm1	97	57.895	ENSPNAG00000013707	lsm1	100	57.895	Pygocentrus_nattereri
FBgn0261067	LSm1	91	64.516	ENSRNOG00000015375	Lsm1	93	64.516	Rattus_norvegicus
FBgn0261067	LSm1	91	63.710	ENSRBIG00000027449	LSM1	93	63.710	Rhinopithecus_bieti
FBgn0261067	LSm1	91	63.710	ENSRROG00000036074	LSM1	93	63.710	Rhinopithecus_roxellana
FBgn0261067	LSm1	92	40.741	YJL124C	LSM1	58	48.485	Saccharomyces_cerevisiae
FBgn0261067	LSm1	91	66.129	ENSSHAG00000017260	LSM1	93	66.129	Sarcophilus_harrisii
FBgn0261067	LSm1	91	62.903	ENSSFOG00015019528	lsm1	93	62.903	Scleropages_formosus
FBgn0261067	LSm1	91	58.871	ENSSMAG00000004930	lsm1	93	58.871	Scophthalmus_maximus
FBgn0261067	LSm1	91	59.677	ENSSDUG00000021823	lsm1	93	59.677	Seriola_dumerili
FBgn0261067	LSm1	91	59.677	ENSSLDG00000012154	lsm1	93	59.677	Seriola_lalandi_dorsalis
FBgn0261067	LSm1	91	65.323	ENSSPUG00000014878	LSM1	93	65.323	Sphenodon_punctatus
FBgn0261067	LSm1	91	58.871	ENSSPAG00000020548	lsm1	93	58.871	Stegastes_partitus
FBgn0261067	LSm1	91	64.516	ENSSSCG00000039058	LSM1	93	64.516	Sus_scrofa
FBgn0261067	LSm1	91	66.129	ENSTGUG00000004793	LSM1	93	66.129	Taeniopygia_guttata
FBgn0261067	LSm1	91	60.484	ENSTRUG00000025239	lsm1	93	60.484	Takifugu_rubripes
FBgn0261067	LSm1	91	60.484	ENSTNIG00000004055	lsm1	93	60.484	Tetraodon_nigroviridis
FBgn0261067	LSm1	79	66.667	ENSTBEG00000015884	LSM1	92	66.667	Tupaia_belangeri
FBgn0261067	LSm1	91	63.710	ENSTTRG00000004482	LSM1	93	63.710	Tursiops_truncatus
FBgn0261067	LSm1	91	63.710	ENSUAMG00000004103	LSM1	93	63.710	Ursus_americanus
FBgn0261067	LSm1	91	63.710	ENSUMAG00000009132	LSM1	93	63.710	Ursus_maritimus
FBgn0261067	LSm1	56	74.026	ENSVPAG00000011593	LSM1	100	74.026	Vicugna_pacos
FBgn0261067	LSm1	64	48.864	ENSVVUG00000014880	-	94	48.864	Vulpes_vulpes
FBgn0261067	LSm1	91	63.710	ENSVVUG00000020191	LSM1	93	63.710	Vulpes_vulpes
FBgn0261067	LSm1	91	63.281	ENSXETG00000009004	lsm1	93	63.281	Xenopus_tropicalis
FBgn0261067	LSm1	91	58.871	ENSXCOG00000015631	lsm1	93	58.871	Xiphophorus_couchianus
FBgn0261067	LSm1	91	58.871	ENSXMAG00000026637	lsm1	93	58.871	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	21873635.	IBA	Process
GO:0000339	RNA cap binding	21873635.	IBA	Function
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0006396	RNA processing	10908584.	ISS	Process
GO:0016070	RNA metabolic process	21873635.	IBA	Process
GO:0033962	cytoplasmic mRNA processing body assembly	17403906.	IMP	Process
GO:1990726	Lsm1-7-Pat1 complex	21873635.	IBA	Component