EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0261068 (Gene tree)
Gene ID: 35003
Gene Symbol: LSm7
Alias: -
Full Name: Like Sm 7
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 786 bases
Position: chr2L:16742315-16743100
Accession: FBgn0261068
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0080488	LSM	PF01423.22	1.3e-18	1	1
FBpp0300961	LSM	PF01423.22	1.3e-18	1	1
FBpp0310328	LSM	PF01423.22	1.3e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0308804	-	466	-	FBpp0300961	110 (aa)	-	B1PFP9
FBtr0080934	-	705	-	FBpp0080488	110 (aa)	-	Q9VJI7
FBtr0343770	-	544	-	FBpp0310328	110 (aa)	-	Q9VJI7

Gene Model

Click here to download FBgn0261068's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0261068's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0261068	LSm7	71	35.897	FBgn0261791	SNRPG	91	35.897

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0261068	LSm7	89	76.531	ENSG00000130332	LSM7	94	76.531	Homo_sapiens
FBgn0261068	LSm7	79	73.563	ENSAPOG00000015573	lsm7	84	71.429	Acanthochromis_polyacanthus
FBgn0261068	LSm7	89	77.551	ENSAMEG00000005484	LSM7	94	77.551	Ailuropoda_melanoleuca
FBgn0261068	LSm7	87	72.917	ENSACIG00000006498	lsm7	75	72.917	Amphilophus_citrinellus
FBgn0261068	LSm7	83	73.626	ENSAOCG00000001077	lsm7	88	73.469	Amphiprion_ocellaris
FBgn0261068	LSm7	89	73.469	ENSAPEG00000000694	lsm7	94	73.469	Amphiprion_percula
FBgn0261068	LSm7	89	73.469	ENSAPEG00000024447	lsm7	88	73.469	Amphiprion_percula
FBgn0261068	LSm7	89	73.469	ENSATEG00000008557	lsm7	94	73.469	Anabas_testudineus
FBgn0261068	LSm7	89	76.531	ENSANAG00000037196	-	94	76.531	Aotus_nancymaae
FBgn0261068	LSm7	89	71.429	ENSANAG00000022222	-	94	71.429	Aotus_nancymaae
FBgn0261068	LSm7	90	71.717	ENSACLG00000021021	lsm7	94	72.449	Astatotilapia_calliptera
FBgn0261068	LSm7	89	75.510	ENSAMXG00000037622	lsm7	94	75.510	Astyanax_mexicanus
FBgn0261068	LSm7	89	76.531	ENSBTAG00000004521	LSM7	94	76.531	Bos_taurus
FBgn0261068	LSm7	87	60.417	WBGene00003081	lsm-7	91	60.417	Caenorhabditis_elegans
FBgn0261068	LSm7	89	77.551	ENSCAFG00000019409	LSM7	94	77.551	Canis_familiaris
FBgn0261068	LSm7	89	77.551	ENSCAFG00020018168	LSM7	71	77.551	Canis_lupus_dingo
FBgn0261068	LSm7	89	76.531	ENSCHIG00000023663	LSM7	94	76.531	Capra_hircus
FBgn0261068	LSm7	63	75.362	ENSCAPG00000014534	LSM7	96	75.362	Cavia_aperea
FBgn0261068	LSm7	89	76.531	ENSCPOG00000014025	LSM7	96	76.531	Cavia_porcellus
FBgn0261068	LSm7	89	76.531	ENSCCAG00000035456	LSM7	95	76.531	Cebus_capucinus
FBgn0261068	LSm7	89	76.531	ENSCATG00000023543	LSM7	94	76.531	Cercocebus_atys
FBgn0261068	LSm7	89	76.531	ENSCLAG00000011635	LSM7	94	76.531	Chinchilla_lanigera
FBgn0261068	LSm7	89	76.531	ENSCSAG00000011599	LSM7	94	76.531	Chlorocebus_sabaeus
FBgn0261068	LSm7	63	73.913	ENSCPBG00000021317	LSM7	73	72.857	Chrysemys_picta_bellii
FBgn0261068	LSm7	88	71.134	ENSCING00000022134	-	97	71.134	Ciona_intestinalis
FBgn0261068	LSm7	89	76.531	ENSCANG00000035525	LSM7	94	76.531	Colobus_angolensis_palliatus
FBgn0261068	LSm7	77	69.412	ENSCGRG00001016005	-	88	69.412	Cricetulus_griseus_chok1gshd
FBgn0261068	LSm7	89	75.510	ENSCGRG00001000807	-	94	75.510	Cricetulus_griseus_chok1gshd
FBgn0261068	LSm7	89	75.510	ENSCGRG00000014355	-	93	75.510	Cricetulus_griseus_crigri
FBgn0261068	LSm7	77	69.412	ENSCGRG00000006821	-	88	69.412	Cricetulus_griseus_crigri
FBgn0261068	LSm7	94	70.874	ENSCSEG00000014900	lsm7	87	70.755	Cynoglossus_semilaevis
FBgn0261068	LSm7	96	71.698	ENSCVAG00000021091	lsm7	96	71.698	Cyprinodon_variegatus
FBgn0261068	LSm7	89	73.469	ENSDARG00000058328	lsm7	94	73.469	Danio_rerio
FBgn0261068	LSm7	89	77.551	ENSDORG00000024460	Lsm7	95	77.551	Dipodomys_ordii
FBgn0261068	LSm7	89	74.490	ENSETEG00000012788	LSM7	95	74.490	Echinops_telfairi
FBgn0261068	LSm7	89	75.510	ENSEBUG00000016992	lsm7	93	75.510	Eptatretus_burgeri
FBgn0261068	LSm7	76	58.333	ENSEBUG00000010470	-	79	58.333	Eptatretus_burgeri
FBgn0261068	LSm7	83	75.824	ENSECAG00000001440	LSM7	65	72.816	Equus_caballus
FBgn0261068	LSm7	89	77.551	ENSFCAG00000003445	LSM7	94	77.551	Felis_catus
FBgn0261068	LSm7	89	74.490	ENSFALG00000011912	LSM7	96	74.490	Ficedula_albicollis
FBgn0261068	LSm7	85	76.596	ENSFDAG00000007661	LSM7	97	76.596	Fukomys_damarensis
FBgn0261068	LSm7	82	73.333	ENSFHEG00000006349	lsm7	91	71.845	Fundulus_heteroclitus
FBgn0261068	LSm7	89	73.469	ENSGMOG00000013320	lsm7	94	73.469	Gadus_morhua
FBgn0261068	LSm7	89	73.469	ENSGAFG00000013902	lsm7	94	73.469	Gambusia_affinis
FBgn0261068	LSm7	89	72.449	ENSGACG00000010390	lsm7	94	72.449	Gasterosteus_aculeatus
FBgn0261068	LSm7	89	76.531	ENSGGOG00000010172	LSM7	94	76.531	Gorilla_gorilla
FBgn0261068	LSm7	89	72.449	ENSHBUG00000004616	lsm7	94	72.449	Haplochromis_burtoni
FBgn0261068	LSm7	89	76.531	ENSHGLG00000010587	LSM7	94	76.531	Heterocephalus_glaber_female
FBgn0261068	LSm7	89	76.531	ENSHGLG00100000852	LSM7	94	76.531	Heterocephalus_glaber_male
FBgn0261068	LSm7	89	72.449	ENSHCOG00000020252	lsm7	96	72.449	Hippocampus_comes
FBgn0261068	LSm7	90	73.737	ENSIPUG00000024724	lsm7	94	74.490	Ictalurus_punctatus
FBgn0261068	LSm7	89	76.531	ENSSTOG00000028372	LSM7	95	76.531	Ictidomys_tridecemlineatus
FBgn0261068	LSm7	89	75.510	ENSJJAG00000001936	Lsm7	94	75.510	Jaculus_jaculus
FBgn0261068	LSm7	89	73.469	ENSKMAG00000022151	lsm7	94	73.469	Kryptolebias_marmoratus
FBgn0261068	LSm7	89	73.469	ENSLBEG00000005203	lsm7	94	73.469	Labrus_bergylta
FBgn0261068	LSm7	83	76.923	ENSLACG00000015700	LSM7	94	76.531	Latimeria_chalumnae
FBgn0261068	LSm7	89	75.510	ENSLOCG00000004356	lsm7	94	75.510	Lepisosteus_oculatus
FBgn0261068	LSm7	89	76.531	ENSLAFG00000029302	LSM7	94	76.531	Loxodonta_africana
FBgn0261068	LSm7	89	76.531	ENSMFAG00000044572	LSM7	94	76.531	Macaca_fascicularis
FBgn0261068	LSm7	89	76.531	ENSMMUG00000000452	LSM7	95	76.531	Macaca_mulatta
FBgn0261068	LSm7	89	76.531	ENSMNEG00000004393	LSM7	94	76.531	Macaca_nemestrina
FBgn0261068	LSm7	89	76.531	ENSMLEG00000030852	LSM7	96	76.531	Mandrillus_leucophaeus
FBgn0261068	LSm7	89	72.449	ENSMAMG00000005410	lsm7	94	72.449	Mastacembelus_armatus
FBgn0261068	LSm7	89	72.449	ENSMZEG00005028055	lsm7	94	72.449	Maylandia_zebra
FBgn0261068	LSm7	83	75.824	ENSMGAG00000000750	LSM7	95	70.270	Meleagris_gallopavo
FBgn0261068	LSm7	89	75.510	ENSMAUG00000009276	Lsm7	94	75.510	Mesocricetus_auratus
FBgn0261068	LSm7	89	76.531	ENSMICG00000028619	-	94	76.531	Microcebus_murinus
FBgn0261068	LSm7	89	76.531	ENSMICG00000009988	-	94	76.531	Microcebus_murinus
FBgn0261068	LSm7	89	75.510	ENSMOCG00000016925	Lsm7	94	75.510	Microtus_ochrogaster
FBgn0261068	LSm7	89	73.469	ENSMMOG00000019645	lsm7	92	73.469	Mola_mola
FBgn0261068	LSm7	89	76.531	ENSMODG00000004722	LSM7	94	76.531	Monodelphis_domestica
FBgn0261068	LSm7	96	68.868	ENSMALG00000014511	lsm7	81	68.868	Monopterus_albus
FBgn0261068	LSm7	89	75.510	MGP_CAROLIEiJ_G0015607	Lsm7	94	75.510	Mus_caroli
FBgn0261068	LSm7	89	75.510	ENSMUSG00000035215	Lsm7	94	75.510	Mus_musculus
FBgn0261068	LSm7	89	75.510	MGP_PahariEiJ_G0031020	Lsm7	94	75.510	Mus_pahari
FBgn0261068	LSm7	89	75.510	MGP_SPRETEiJ_G0016425	Lsm7	94	75.510	Mus_spretus
FBgn0261068	LSm7	88	70.103	ENSMLUG00000024002	-	89	70.103	Myotis_lucifugus
FBgn0261068	LSm7	89	76.531	ENSMLUG00000013097	-	94	76.531	Myotis_lucifugus
FBgn0261068	LSm7	89	74.490	ENSNGAG00000021637	Lsm7	94	74.490	Nannospalax_galili
FBgn0261068	LSm7	89	72.449	ENSNBRG00000015770	lsm7	84	72.449	Neolamprologus_brichardi
FBgn0261068	LSm7	84	73.913	ENSNBRG00000001237	-	78	72.449	Neolamprologus_brichardi
FBgn0261068	LSm7	89	76.531	ENSNLEG00000002265	LSM7	94	76.531	Nomascus_leucogenys
FBgn0261068	LSm7	89	76.531	ENSODEG00000013590	-	94	76.531	Octodon_degus
FBgn0261068	LSm7	89	69.388	ENSODEG00000018769	-	94	69.388	Octodon_degus
FBgn0261068	LSm7	89	60.204	ENSODEG00000008190	-	94	60.204	Octodon_degus
FBgn0261068	LSm7	95	69.231	ENSONIG00000001801	lsm7	89	69.231	Oreochromis_niloticus
FBgn0261068	LSm7	89	73.469	ENSORLG00000023951	lsm7	94	73.469	Oryzias_latipes
FBgn0261068	LSm7	89	73.469	ENSORLG00020022226	lsm7	94	73.469	Oryzias_latipes_hni
FBgn0261068	LSm7	89	73.469	ENSORLG00015020044	lsm7	90	73.469	Oryzias_latipes_hsok
FBgn0261068	LSm7	89	73.469	ENSOMEG00000012806	lsm7	94	73.469	Oryzias_melastigma
FBgn0261068	LSm7	88	65.979	ENSOGAG00000024373	-	94	65.979	Otolemur_garnettii
FBgn0261068	LSm7	89	75.510	ENSOGAG00000000144	-	95	75.510	Otolemur_garnettii
FBgn0261068	LSm7	89	76.531	ENSOARG00000014013	LSM7	94	76.531	Ovis_aries
FBgn0261068	LSm7	89	76.531	ENSPPAG00000026500	LSM7	94	76.531	Pan_paniscus
FBgn0261068	LSm7	89	77.551	ENSPPRG00000008624	LSM7	94	77.551	Panthera_pardus
FBgn0261068	LSm7	83	78.022	ENSPTIG00000016252	LSM7	94	77.551	Panthera_tigris_altaica
FBgn0261068	LSm7	89	76.531	ENSPTRG00000010233	LSM7	94	76.531	Pan_troglodytes
FBgn0261068	LSm7	89	76.531	ENSPANG00000020668	LSM7	94	76.531	Papio_anubis
FBgn0261068	LSm7	89	74.490	ENSPKIG00000011325	lsm7	94	74.490	Paramormyrops_kingsleyae
FBgn0261068	LSm7	83	75.824	ENSPSIG00000017149	LSM7	85	75.510	Pelodiscus_sinensis
FBgn0261068	LSm7	89	73.469	ENSPMGG00000006498	lsm7	94	73.469	Periophthalmus_magnuspinnatus
FBgn0261068	LSm7	89	76.531	ENSPCIG00000030454	LSM7	95	76.531	Phascolarctos_cinereus
FBgn0261068	LSm7	89	73.469	ENSPFOG00000012467	lsm7	86	73.469	Poecilia_formosa
FBgn0261068	LSm7	89	73.469	ENSPLAG00000000252	lsm7	94	70.874	Poecilia_latipinna
FBgn0261068	LSm7	89	73.469	ENSPMEG00000000587	lsm7	94	70.874	Poecilia_mexicana
FBgn0261068	LSm7	78	58.140	ENSPREG00000016718	lsm7	65	58.140	Poecilia_reticulata
FBgn0261068	LSm7	89	76.531	ENSPCOG00000017177	LSM7	95	76.531	Propithecus_coquereli
FBgn0261068	LSm7	89	72.449	ENSPNYG00000006938	lsm7	94	72.449	Pundamilia_nyererei
FBgn0261068	LSm7	89	75.510	ENSPNAG00000010141	lsm7	95	75.510	Pygocentrus_nattereri
FBgn0261068	LSm7	89	75.510	ENSRNOG00000019552	Lsm7	94	75.510	Rattus_norvegicus
FBgn0261068	LSm7	89	76.531	ENSRBIG00000035978	LSM7	94	76.531	Rhinopithecus_bieti
FBgn0261068	LSm7	89	76.531	ENSRROG00000034044	LSM7	94	76.531	Rhinopithecus_roxellana
FBgn0261068	LSm7	75	49.412	YNL147W	-	74	49.412	Saccharomyces_cerevisiae
FBgn0261068	LSm7	89	76.531	ENSSBOG00000034899	LSM7	94	76.531	Saimiri_boliviensis_boliviensis
FBgn0261068	LSm7	89	76.531	ENSSFOG00015006728	lsm7	94	76.531	Scleropages_formosus
FBgn0261068	LSm7	89	73.469	ENSSMAG00000004195	lsm7	89	73.469	Scophthalmus_maximus
FBgn0261068	LSm7	89	73.469	ENSSDUG00000001863	lsm7	94	73.469	Seriola_dumerili
FBgn0261068	LSm7	89	73.469	ENSSLDG00000016339	lsm7	94	73.469	Seriola_lalandi_dorsalis
FBgn0261068	LSm7	89	73.469	ENSSPAG00000015221	lsm7	94	73.469	Stegastes_partitus
FBgn0261068	LSm7	89	76.531	ENSSSCG00000013463	LSM7	95	76.531	Sus_scrofa
FBgn0261068	LSm7	89	74.490	ENSTGUG00000000067	LSM7	96	74.490	Taeniopygia_guttata
FBgn0261068	LSm7	89	73.469	ENSTRUG00000022913	lsm7	94	73.469	Takifugu_rubripes
FBgn0261068	LSm7	89	73.469	ENSTNIG00000015525	lsm7	94	73.469	Tetraodon_nigroviridis
FBgn0261068	LSm7	62	63.235	ENSTBEG00000016602	LSM7	96	63.235	Tupaia_belangeri
FBgn0261068	LSm7	89	77.551	ENSUAMG00000000912	LSM7	81	77.551	Ursus_americanus
FBgn0261068	LSm7	83	78.022	ENSUMAG00000006556	LSM7	80	74.757	Ursus_maritimus
FBgn0261068	LSm7	63	76.812	ENSVVUG00000002640	LSM7	62	76.812	Vulpes_vulpes
FBgn0261068	LSm7	89	74.490	ENSXETG00000022166	lsm7	96	74.490	Xenopus_tropicalis
FBgn0261068	LSm7	83	73.626	ENSXCOG00000002572	lsm7	95	73.469	Xiphophorus_couchianus
FBgn0261068	LSm7	89	73.469	ENSXMAG00000018630	lsm7	94	73.469	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0000956	nuclear-transcribed mRNA catabolic process	-	IEA	Process
GO:0003723	RNA binding	-	ISS	Function
GO:0005688	U6 snRNP	21873635.	IBA	Component
GO:0005688	U6 snRNP	10908584.	ISS	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:1990726	Lsm1-7-Pat1 complex	21873635.	IBA	Component