EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0261872 (Gene tree)
Gene ID: 3346235
Gene Symbol: scaf6
Alias: -
Full Name: SR-related CTD associated factor 6
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 5716 bases
Position: chr3L:17036859-17042574
Accession: FBgn0261872
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0290769	Surp	PF01805.20	1.3e-15	1	1
FBpp0311297	Surp	PF01805.20	2.2e-15	1	1
FBpp0075048	Surp	PF01805.20	9.4e-15	1	1
FBpp0075048	G-patch	PF01585.23	4.7e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0345067	-	2998	-	FBpp0311297	251 (aa)	-	A0A023GQ04
FBtr0301554	-	1415	-	FBpp0290769	182 (aa)	-	Q86MQ9
FBtr0091474	-	3071	-	FBpp0075048	960 (aa)	-	Q59E33

Gene Model

Click here to download FBgn0261872's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0261872's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0261872	scaf6	59	57.333	ENSG00000085872	CHERP	65	57.333	Homo_sapiens
FBgn0261872	scaf6	55	62.121	ENSAMEG00000010048	CHERP	63	62.687	Ailuropoda_melanoleuca
FBgn0261872	scaf6	60	62.500	ENSACIG00000019242	cherp	63	62.500	Amphilophus_citrinellus
FBgn0261872	scaf6	54	62.500	ENSATEG00000006341	cherp	62	62.500	Anabas_testudineus
FBgn0261872	scaf6	59	57.333	ENSANAG00000024284	CHERP	63	66.667	Aotus_nancymaae
FBgn0261872	scaf6	53	55.696	ENSAMXG00000021637	cherp	57	60.938	Astyanax_mexicanus
FBgn0261872	scaf6	55	63.235	ENSBTAG00000005289	CHERP	66	59.000	Bos_taurus
FBgn0261872	scaf6	59	57.333	ENSCJAG00000040462	CHERP	63	66.667	Callithrix_jacchus
FBgn0261872	scaf6	55	63.235	ENSCAFG00000015671	CHERP	63	63.235	Canis_familiaris
FBgn0261872	scaf6	55	62.687	ENSCAFG00020009941	CHERP	64	63.235	Canis_lupus_dingo
FBgn0261872	scaf6	55	63.235	ENSCHIG00000013765	CHERP	59	63.889	Capra_hircus
FBgn0261872	scaf6	55	63.235	ENSCPOG00000019949	CHERP	63	63.235	Cavia_porcellus
FBgn0261872	scaf6	59	57.333	ENSCCAG00000031534	CHERP	65	57.333	Cebus_capucinus
FBgn0261872	scaf6	55	61.765	ENSCATG00000031409	CHERP	64	57.333	Cercocebus_atys
FBgn0261872	scaf6	55	61.765	ENSCSAG00000005740	CHERP	64	57.333	Chlorocebus_sabaeus
FBgn0261872	scaf6	54	64.516	ENSCPBG00000014970	CHERP	69	41.121	Chrysemys_picta_bellii
FBgn0261872	scaf6	56	59.091	ENSCING00000004814	-	69	59.091	Ciona_intestinalis
FBgn0261872	scaf6	90	36.123	ENSCSAVG00000002455	-	70	56.000	Ciona_savignyi
FBgn0261872	scaf6	55	61.765	ENSCANG00000032053	CHERP	64	57.333	Colobus_angolensis_palliatus
FBgn0261872	scaf6	55	63.235	ENSCGRG00001023316	Cherp	63	63.235	Cricetulus_griseus_chok1gshd
FBgn0261872	scaf6	55	62.687	ENSCGRG00000015901	Cherp	63	64.516	Cricetulus_griseus_crigri
FBgn0261872	scaf6	94	37.815	ENSCVAG00000003622	cherp	56	65.625	Cyprinodon_variegatus
FBgn0261872	scaf6	54	62.500	ENSDARG00000021812	cherp	87	62.500	Danio_rerio
FBgn0261872	scaf6	55	64.179	ENSDORG00000027623	Cherp	73	68.254	Dipodomys_ordii
FBgn0261872	scaf6	56	67.143	ENSEBUG00000009109	cherp	61	67.143	Eptatretus_burgeri
FBgn0261872	scaf6	55	63.235	ENSEASG00005000428	CHERP	58	63.235	Equus_asinus_asinus
FBgn0261872	scaf6	55	63.235	ENSECAG00000012713	CHERP	63	63.235	Equus_caballus
FBgn0261872	scaf6	54	60.938	ENSELUG00000023026	cherp	61	60.938	Esox_lucius
FBgn0261872	scaf6	55	62.687	ENSFCAG00000013172	CHERP	64	63.235	Felis_catus
FBgn0261872	scaf6	54	62.903	ENSFALG00000013410	CHERP	58	41.121	Ficedula_albicollis
FBgn0261872	scaf6	53	63.934	ENSFDAG00000015981	CHERP	66	58.333	Fukomys_damarensis
FBgn0261872	scaf6	51	58.929	ENSGMOG00000008654	cherp	63	60.000	Gadus_morhua
FBgn0261872	scaf6	94	36.017	ENSGAFG00000004421	cherp	72	64.062	Gambusia_affinis
FBgn0261872	scaf6	92	32.479	ENSGACG00000002053	cherp	61	61.818	Gasterosteus_aculeatus
FBgn0261872	scaf6	54	64.516	ENSGAGG00000014208	CHERP	60	64.516	Gopherus_agassizii
FBgn0261872	scaf6	55	56.250	ENSHBUG00000007405	cherp	66	59.000	Haplochromis_burtoni
FBgn0261872	scaf6	55	63.235	ENSHGLG00000002993	CHERP	73	63.235	Heterocephalus_glaber_female
FBgn0261872	scaf6	50	67.925	ENSHGLG00100010390	CHERP	70	67.925	Heterocephalus_glaber_male
FBgn0261872	scaf6	52	61.017	ENSHCOG00000007691	cherp	68	56.000	Hippocampus_comes
FBgn0261872	scaf6	53	64.516	ENSSTOG00000012089	CHERP	73	64.516	Ictidomys_tridecemlineatus
FBgn0261872	scaf6	92	37.662	ENSJJAG00000017982	Cherp	62	63.235	Jaculus_jaculus
FBgn0261872	scaf6	56	60.000	ENSLACG00000018221	CHERP	62	60.000	Latimeria_chalumnae
FBgn0261872	scaf6	54	65.625	ENSLOCG00000003654	cherp	62	65.625	Lepisosteus_oculatus
FBgn0261872	scaf6	55	63.235	ENSLAFG00000009096	CHERP	64	63.235	Loxodonta_africana
FBgn0261872	scaf6	55	61.765	ENSMFAG00000033267	CHERP	65	57.333	Macaca_fascicularis
FBgn0261872	scaf6	55	61.765	ENSMMUG00000012958	CHERP	64	59.000	Macaca_mulatta
FBgn0261872	scaf6	55	61.765	ENSMNEG00000004125	CHERP	65	57.333	Macaca_nemestrina
FBgn0261872	scaf6	55	61.765	ENSMLEG00000044337	CHERP	95	57.333	Mandrillus_leucophaeus
FBgn0261872	scaf6	54	62.500	ENSMAMG00000022269	cherp	63	62.500	Mastacembelus_armatus
FBgn0261872	scaf6	55	63.235	ENSMAUG00000015856	Cherp	63	63.235	Mesocricetus_auratus
FBgn0261872	scaf6	55	63.235	ENSMICG00000004577	CHERP	63	63.235	Microcebus_murinus
FBgn0261872	scaf6	55	63.235	ENSMOCG00000014697	Cherp	63	63.235	Microtus_ochrogaster
FBgn0261872	scaf6	55	63.235	ENSMODG00000014938	CHERP	66	42.006	Monodelphis_domestica
FBgn0261872	scaf6	55	63.235	MGP_CAROLIEiJ_G0031220	Cherp	63	63.235	Mus_caroli
FBgn0261872	scaf6	55	63.235	ENSMUSG00000052488	Cherp	63	63.235	Mus_musculus
FBgn0261872	scaf6	55	63.235	MGP_PahariEiJ_G0021685	Cherp	63	63.235	Mus_pahari
FBgn0261872	scaf6	55	63.235	MGP_SPRETEiJ_G0032341	Cherp	62	63.235	Mus_spretus
FBgn0261872	scaf6	55	62.687	ENSMPUG00000016023	CHERP	62	63.235	Mustela_putorius_furo
FBgn0261872	scaf6	57	61.765	ENSMLUG00000013881	CHERP	64	61.765	Myotis_lucifugus
FBgn0261872	scaf6	55	63.235	ENSNGAG00000023323	Cherp	62	63.235	Nannospalax_galili
FBgn0261872	scaf6	55	61.765	ENSNLEG00000005536	CHERP	61	68.333	Nomascus_leucogenys
FBgn0261872	scaf6	55	63.235	ENSMEUG00000010840	CHERP	61	42.006	Notamacropus_eugenii
FBgn0261872	scaf6	53	63.934	ENSODEG00000001528	CHERP	53	58.333	Octodon_degus
FBgn0261872	scaf6	51	54.255	ENSORLG00000000138	cherp	65	64.062	Oryzias_latipes
FBgn0261872	scaf6	55	57.500	ENSORLG00020013142	cherp	73	66.038	Oryzias_latipes_hni
FBgn0261872	scaf6	55	58.750	ENSORLG00015008911	cherp	64	64.062	Oryzias_latipes_hsok
FBgn0261872	scaf6	66	52.688	ENSOMEG00000016947	cherp	70	56.250	Oryzias_melastigma
FBgn0261872	scaf6	55	63.235	ENSOGAG00000005834	CHERP	63	63.235	Otolemur_garnettii
FBgn0261872	scaf6	59	57.333	ENSPPAG00000029195	CHERP	64	57.333	Pan_paniscus
FBgn0261872	scaf6	55	62.687	ENSPPRG00000003275	CHERP	64	63.235	Panthera_pardus
FBgn0261872	scaf6	55	62.687	ENSPTIG00000019778	CHERP	64	62.687	Panthera_tigris_altaica
FBgn0261872	scaf6	59	57.333	ENSPTRG00000010647	CHERP	82	67.188	Pan_troglodytes
FBgn0261872	scaf6	55	61.765	ENSPANG00000011698	CHERP	65	57.333	Papio_anubis
FBgn0261872	scaf6	53	64.407	ENSPKIG00000000423	cherp	66	62.903	Paramormyrops_kingsleyae
FBgn0261872	scaf6	52	65.517	ENSPSIG00000011974	CHERP	63	65.517	Pelodiscus_sinensis
FBgn0261872	scaf6	50	64.151	ENSPMGG00000023606	cherp	58	56.364	Periophthalmus_magnuspinnatus
FBgn0261872	scaf6	55	63.235	ENSPEMG00000011238	Cherp	63	63.235	Peromyscus_maniculatus_bairdii
FBgn0261872	scaf6	55	63.235	ENSPCIG00000019615	CHERP	63	42.006	Phascolarctos_cinereus
FBgn0261872	scaf6	54	64.062	ENSPFOG00000016899	cherp	63	64.062	Poecilia_formosa
FBgn0261872	scaf6	92	35.498	ENSPLAG00000003350	cherp	78	62.712	Poecilia_latipinna
FBgn0261872	scaf6	94	36.441	ENSPREG00000020774	cherp	63	64.062	Poecilia_reticulata
FBgn0261872	scaf6	55	61.765	ENSPPYG00000009691	CHERP	70	41.693	Pongo_abelii
FBgn0261872	scaf6	55	63.235	ENSPVAG00000004320	CHERP	53	63.235	Pteropus_vampyrus
FBgn0261872	scaf6	92	36.087	ENSPNAG00000017179	cherp	61	62.295	Pygocentrus_nattereri
FBgn0261872	scaf6	55	63.235	ENSRNOG00000012323	Cherp	62	63.235	Rattus_norvegicus
FBgn0261872	scaf6	55	61.765	ENSRBIG00000038621	CHERP	65	57.333	Rhinopithecus_bieti
FBgn0261872	scaf6	55	61.765	ENSRROG00000040770	CHERP	65	57.333	Rhinopithecus_roxellana
FBgn0261872	scaf6	55	61.765	ENSSBOG00000014492	CHERP	63	66.667	Saimiri_boliviensis_boliviensis
FBgn0261872	scaf6	58	58.333	ENSSHAG00000010752	CHERP	65	42.006	Sarcophilus_harrisii
FBgn0261872	scaf6	54	62.500	ENSSDUG00000019712	cherp	63	64.815	Seriola_dumerili
FBgn0261872	scaf6	54	62.500	ENSSLDG00000012659	cherp	63	62.500	Seriola_lalandi_dorsalis
FBgn0261872	scaf6	53	66.102	ENSSPUG00000008901	CHERP	69	40.810	Sphenodon_punctatus
FBgn0261872	scaf6	55	62.687	ENSSSCG00000013860	CHERP	63	63.235	Sus_scrofa
FBgn0261872	scaf6	55	59.701	ENSTGUG00000000680	CHERP	68	41.379	Taeniopygia_guttata
FBgn0261872	scaf6	55	62.687	ENSUAMG00000017295	CHERP	73	63.235	Ursus_americanus
FBgn0261872	scaf6	55	62.687	ENSVVUG00000016546	CHERP	64	63.235	Vulpes_vulpes
FBgn0261872	scaf6	94	36.017	ENSXCOG00000005936	cherp	79	64.062	Xiphophorus_couchianus
FBgn0261872	scaf6	94	36.017	ENSXMAG00000008026	cherp	78	64.062	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0006396	RNA processing	-	IEA	Process
GO:0006874	cellular calcium ion homeostasis	-	IEA	Process