EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0261933 (Gene tree)
Gene ID: 44668
Gene Symbol: SmD1
Alias: -
Full Name: Small ribonucleoprotein particle protein SmD1
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 1248 bases
Position: chr3L:12733364-12734611
Accession: FBgn0261933
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0075684	LSM	PF01423.22	3e-18	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0075952	-	729	-	FBpp0075684	124 (aa)	-	Q9VU02

Gene Model

Click here to download FBgn0261933's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0261933's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0261933	SmD1	76	82.979	ENSG00000167088	SNRPD1	68	96.667	Homo_sapiens
FBgn0261933	SmD1	76	80.851	ENSAPOG00000019446	snrpd1	51	80.851	Acanthochromis_polyacanthus
FBgn0261933	SmD1	74	80.435	ENSAMEG00000002576	SNRPD1	79	80.435	Ailuropoda_melanoleuca
FBgn0261933	SmD1	70	79.310	ENSACIG00000011263	snrpd1	78	79.310	Amphilophus_citrinellus
FBgn0261933	SmD1	76	80.851	ENSAOCG00000007406	snrpd1	79	80.851	Amphiprion_ocellaris
FBgn0261933	SmD1	76	76.596	ENSAPEG00000014961	snrpd1	78	76.596	Amphiprion_percula
FBgn0261933	SmD1	70	79.310	ENSAPEG00000012539	SNRPD1	78	79.310	Amphiprion_percula
FBgn0261933	SmD1	76	80.851	ENSATEG00000014399	snrpd1	79	80.851	Anabas_testudineus
FBgn0261933	SmD1	73	82.222	ENSAPLG00000012256	SNRPD1	76	82.222	Anas_platyrhynchos
FBgn0261933	SmD1	76	82.979	ENSACAG00000006364	SNRPD1	79	82.979	Anolis_carolinensis
FBgn0261933	SmD1	76	82.979	ENSANAG00000025641	SNRPD1	79	82.979	Aotus_nancymaae
FBgn0261933	SmD1	70	79.310	ENSACLG00000017406	snrpd1	78	79.310	Astatotilapia_calliptera
FBgn0261933	SmD1	85	73.585	ENSAMXG00000004589	snrpd1	79	80.851	Astyanax_mexicanus
FBgn0261933	SmD1	76	78.723	ENSBTAG00000047266	-	79	78.723	Bos_taurus
FBgn0261933	SmD1	76	80.851	ENSBTAG00000012376	-	70	80.851	Bos_taurus
FBgn0261933	SmD1	74	78.261	ENSBTAG00000055316	-	79	78.261	Bos_taurus
FBgn0261933	SmD1	76	82.979	ENSBTAG00000008292	SNRPD1	79	82.979	Bos_taurus
FBgn0261933	SmD1	71	78.409	WBGene00004916	snr-3	71	76.667	Caenorhabditis_elegans
FBgn0261933	SmD1	76	82.979	ENSCJAG00000042955	SNRPD1	79	82.979	Callithrix_jacchus
FBgn0261933	SmD1	76	82.979	ENSCAFG00000018247	SNRPD1	79	82.979	Canis_familiaris
FBgn0261933	SmD1	90	73.214	ENSCAFG00020015914	SNRPD1	73	82.979	Canis_lupus_dingo
FBgn0261933	SmD1	76	79.787	ENSCHIG00000005557	SNRPD1	77	81.522	Capra_hircus
FBgn0261933	SmD1	76	82.979	ENSTSYG00000030028	SNRPD1	79	82.979	Carlito_syrichta
FBgn0261933	SmD1	73	81.111	ENSCAPG00000008103	SNRPD1	78	81.111	Cavia_aperea
FBgn0261933	SmD1	76	82.979	ENSCPOG00000004679	SNRPD1	79	82.979	Cavia_porcellus
FBgn0261933	SmD1	76	81.915	ENSCCAG00000020611	-	79	81.915	Cebus_capucinus
FBgn0261933	SmD1	76	78.723	ENSCCAG00000005390	-	79	78.723	Cebus_capucinus
FBgn0261933	SmD1	76	80.851	ENSCCAG00000016652	-	79	80.851	Cebus_capucinus
FBgn0261933	SmD1	76	82.979	ENSCCAG00000032658	SNRPD1	79	82.979	Cebus_capucinus
FBgn0261933	SmD1	76	82.979	ENSCATG00000039978	SNRPD1	79	82.979	Cercocebus_atys
FBgn0261933	SmD1	76	82.979	ENSCLAG00000008691	SNRPD1	79	82.979	Chinchilla_lanigera
FBgn0261933	SmD1	76	82.979	ENSCSAG00000017654	SNRPD1	79	82.979	Chlorocebus_sabaeus
FBgn0261933	SmD1	77	83.158	ENSCPBG00000023143	SNRPD1	80	82.979	Chrysemys_picta_bellii
FBgn0261933	SmD1	70	83.908	ENSCING00000024100	-	70	83.908	Ciona_intestinalis
FBgn0261933	SmD1	69	82.558	ENSCSAVG00000004578	-	69	82.558	Ciona_savignyi
FBgn0261933	SmD1	76	82.979	ENSCGRG00001021055	-	79	82.979	Cricetulus_griseus_chok1gshd
FBgn0261933	SmD1	75	60.215	ENSCGRG00001009945	-	82	60.215	Cricetulus_griseus_chok1gshd
FBgn0261933	SmD1	75	60.215	ENSCGRG00000006224	-	82	60.215	Cricetulus_griseus_crigri
FBgn0261933	SmD1	76	82.979	ENSCGRG00000000490	-	79	82.979	Cricetulus_griseus_crigri
FBgn0261933	SmD1	77	79.167	ENSCSEG00000018141	snrpd1	79	79.787	Cynoglossus_semilaevis
FBgn0261933	SmD1	76	80.851	ENSCVAG00000000534	snrpd1	79	80.851	Cyprinodon_variegatus
FBgn0261933	SmD1	76	80.851	ENSDARG00000011648	snrpd1	96	79.121	Danio_rerio
FBgn0261933	SmD1	76	82.979	ENSDNOG00000040310	SNRPD1	79	82.979	Dasypus_novemcinctus
FBgn0261933	SmD1	76	82.979	ENSDORG00000008349	Snrpd1	79	82.979	Dipodomys_ordii
FBgn0261933	SmD1	51	76.190	ENSETEG00000011689	SNRPD1	53	76.190	Echinops_telfairi
FBgn0261933	SmD1	81	77.228	ENSEBUG00000003170	snrpd1	93	80.851	Eptatretus_burgeri
FBgn0261933	SmD1	70	81.609	ENSEASG00005002433	SNRPD1	78	81.609	Equus_asinus_asinus
FBgn0261933	SmD1	70	81.609	ENSECAG00000014373	SNRPD1	78	81.609	Equus_caballus
FBgn0261933	SmD1	72	82.022	ENSEEUG00000004987	SNRPD1	100	82.022	Erinaceus_europaeus
FBgn0261933	SmD1	81	79.000	ENSELUG00000000088	snrpd1	79	81.915	Esox_lucius
FBgn0261933	SmD1	76	82.979	ENSFCAG00000012352	SNRPD1	79	82.979	Felis_catus
FBgn0261933	SmD1	70	81.609	ENSFALG00000002646	SNRPD1	78	81.609	Ficedula_albicollis
FBgn0261933	SmD1	76	80.851	ENSGMOG00000015607	snrpd1	79	80.851	Gadus_morhua
FBgn0261933	SmD1	76	82.979	ENSGALG00000041334	SNRPD1	79	82.979	Gallus_gallus
FBgn0261933	SmD1	76	80.851	ENSGAFG00000011171	snrpd1	79	80.851	Gambusia_affinis
FBgn0261933	SmD1	76	80.851	ENSGACG00000005201	SNRPD1	79	80.851	Gasterosteus_aculeatus
FBgn0261933	SmD1	76	82.979	ENSGAGG00000011197	SNRPD1	79	82.979	Gopherus_agassizii
FBgn0261933	SmD1	95	72.034	ENSGGOG00000026706	-	78	77.660	Gorilla_gorilla
FBgn0261933	SmD1	76	82.979	ENSGGOG00000041053	SNRPD1	79	82.979	Gorilla_gorilla
FBgn0261933	SmD1	77	80.208	ENSHBUG00000003236	snrpd1	79	80.851	Haplochromis_burtoni
FBgn0261933	SmD1	76	82.979	ENSHGLG00000007152	SNRPD1	79	82.979	Heterocephalus_glaber_female
FBgn0261933	SmD1	76	82.979	ENSHGLG00100008618	SNRPD1	79	82.979	Heterocephalus_glaber_male
FBgn0261933	SmD1	76	80.851	ENSIPUG00000003576	snrpd1	79	80.851	Ictalurus_punctatus
FBgn0261933	SmD1	76	82.979	ENSSTOG00000000485	SNRPD1	79	82.979	Ictidomys_tridecemlineatus
FBgn0261933	SmD1	76	82.979	ENSJJAG00000017698	Snrpd1	79	82.979	Jaculus_jaculus
FBgn0261933	SmD1	76	80.851	ENSKMAG00000005987	snrpd1	79	80.851	Kryptolebias_marmoratus
FBgn0261933	SmD1	76	80.851	ENSLBEG00000003327	snrpd1	79	80.851	Labrus_bergylta
FBgn0261933	SmD1	76	82.979	ENSLACG00000001955	SNRPD1	79	82.979	Latimeria_chalumnae
FBgn0261933	SmD1	74	81.522	ENSLOCG00000002003	snrpd1	79	81.522	Lepisosteus_oculatus
FBgn0261933	SmD1	75	80.645	ENSLAFG00000005819	SNRPD1	79	80.645	Loxodonta_africana
FBgn0261933	SmD1	76	82.979	ENSMFAG00000042080	SNRPD1	79	82.979	Macaca_fascicularis
FBgn0261933	SmD1	72	82.022	ENSMMUG00000003992	SNRPD1	76	82.022	Macaca_mulatta
FBgn0261933	SmD1	76	82.979	ENSMNEG00000041296	SNRPD1	79	82.979	Macaca_nemestrina
FBgn0261933	SmD1	76	82.979	ENSMLEG00000028659	SNRPD1	79	82.979	Mandrillus_leucophaeus
FBgn0261933	SmD1	76	80.851	ENSMAMG00000012971	snrpd1	79	80.851	Mastacembelus_armatus
FBgn0261933	SmD1	76	80.851	ENSMZEG00005004685	snrpd1	79	80.851	Maylandia_zebra
FBgn0261933	SmD1	73	82.222	ENSMGAG00000011598	SNRPD1	74	82.222	Meleagris_gallopavo
FBgn0261933	SmD1	75	80.645	ENSMAUG00000006829	-	59	82.222	Mesocricetus_auratus
FBgn0261933	SmD1	76	68.085	ENSMAUG00000016467	-	85	68.085	Mesocricetus_auratus
FBgn0261933	SmD1	76	68.085	ENSMAUG00000016502	-	85	68.085	Mesocricetus_auratus
FBgn0261933	SmD1	76	82.979	ENSMICG00000044066	SNRPD1	79	82.979	Microcebus_murinus
FBgn0261933	SmD1	76	82.979	ENSMOCG00000017367	Snrpd1	79	82.979	Microtus_ochrogaster
FBgn0261933	SmD1	76	80.851	ENSMMOG00000019089	snrpd1	79	80.851	Mola_mola
FBgn0261933	SmD1	76	82.979	ENSMODG00000021487	SNRPD1	79	82.979	Monodelphis_domestica
FBgn0261933	SmD1	76	80.851	ENSMALG00000014459	snrpd1	79	80.851	Monopterus_albus
FBgn0261933	SmD1	76	82.979	MGP_CAROLIEiJ_G0021994	Snrpd1	79	82.979	Mus_caroli
FBgn0261933	SmD1	76	82.979	ENSMUSG00000002477	Snrpd1	79	82.979	Mus_musculus
FBgn0261933	SmD1	76	82.979	MGP_PahariEiJ_G0018731	Snrpd1	79	82.979	Mus_pahari
FBgn0261933	SmD1	76	82.979	MGP_SPRETEiJ_G0022910	Snrpd1	79	82.979	Mus_spretus
FBgn0261933	SmD1	76	81.915	ENSMPUG00000020041	-	79	81.915	Mustela_putorius_furo
FBgn0261933	SmD1	74	80.435	ENSMPUG00000005567	-	79	80.435	Mustela_putorius_furo
FBgn0261933	SmD1	74	81.522	ENSMLUG00000009124	SNRPD1	71	81.522	Myotis_lucifugus
FBgn0261933	SmD1	76	82.979	ENSNGAG00000023946	Snrpd1	79	82.979	Nannospalax_galili
FBgn0261933	SmD1	77	80.208	ENSNBRG00000012119	snrpd1	78	80.851	Neolamprologus_brichardi
FBgn0261933	SmD1	76	79.787	ENSNLEG00000031430	SNRPD1	78	79.787	Nomascus_leucogenys
FBgn0261933	SmD1	76	82.979	ENSODEG00000005764	SNRPD1	79	82.979	Octodon_degus
FBgn0261933	SmD1	76	80.851	ENSONIG00000002486	snrpd1	79	80.851	Oreochromis_niloticus
FBgn0261933	SmD1	73	75.556	ENSOANG00000004638	-	76	75.556	Ornithorhynchus_anatinus
FBgn0261933	SmD1	76	81.915	ENSOCUG00000014399	-	79	81.915	Oryctolagus_cuniculus
FBgn0261933	SmD1	74	80.435	ENSOCUG00000023761	-	79	80.435	Oryctolagus_cuniculus
FBgn0261933	SmD1	70	79.310	ENSORLG00000012516	snrpd1	78	79.310	Oryzias_latipes
FBgn0261933	SmD1	76	80.851	ENSORLG00020005743	snrpd1	79	80.851	Oryzias_latipes_hni
FBgn0261933	SmD1	76	80.851	ENSORLG00015013402	snrpd1	79	80.851	Oryzias_latipes_hsok
FBgn0261933	SmD1	76	80.851	ENSOMEG00000011571	snrpd1	79	80.851	Oryzias_melastigma
FBgn0261933	SmD1	76	78.723	ENSOGAG00000007833	SNRPD1	77	80.435	Otolemur_garnettii
FBgn0261933	SmD1	76	82.979	ENSOARG00000003413	-	71	82.979	Ovis_aries
FBgn0261933	SmD1	76	82.979	ENSPPAG00000042593	SNRPD1	79	82.979	Pan_paniscus
FBgn0261933	SmD1	76	57.447	ENSPPRG00000005009	-	73	57.447	Panthera_pardus
FBgn0261933	SmD1	76	82.979	ENSPPRG00000002399	SNRPD1	79	82.979	Panthera_pardus
FBgn0261933	SmD1	72	82.022	ENSPTIG00000013206	SNRPD1	78	82.022	Panthera_tigris_altaica
FBgn0261933	SmD1	76	82.979	ENSPTRG00000009909	SNRPD1	79	82.979	Pan_troglodytes
FBgn0261933	SmD1	76	77.660	ENSPTRG00000050159	-	80	77.660	Pan_troglodytes
FBgn0261933	SmD1	76	82.979	ENSPANG00000023478	SNRPD1	79	82.979	Papio_anubis
FBgn0261933	SmD1	70	79.310	ENSPKIG00000021610	snrpd1	78	79.310	Paramormyrops_kingsleyae
FBgn0261933	SmD1	76	81.915	ENSPKIG00000003985	SNRPD1	79	81.915	Paramormyrops_kingsleyae
FBgn0261933	SmD1	76	80.851	ENSPMGG00000001862	snrpd1	79	80.851	Periophthalmus_magnuspinnatus
FBgn0261933	SmD1	76	82.979	ENSPEMG00000014773	-	79	82.979	Peromyscus_maniculatus_bairdii
FBgn0261933	SmD1	96	68.595	ENSPMAG00000003938	-	96	69.231	Petromyzon_marinus
FBgn0261933	SmD1	76	82.979	ENSPCIG00000020320	SNRPD1	79	82.979	Phascolarctos_cinereus
FBgn0261933	SmD1	76	80.851	ENSPFOG00000012448	SNRPD1	83	80.851	Poecilia_formosa
FBgn0261933	SmD1	76	80.851	ENSPLAG00000006738	snrpd1	83	80.851	Poecilia_latipinna
FBgn0261933	SmD1	76	80.851	ENSPMEG00000021942	snrpd1	83	80.851	Poecilia_mexicana
FBgn0261933	SmD1	76	80.851	ENSPREG00000007094	snrpd1	79	80.851	Poecilia_reticulata
FBgn0261933	SmD1	76	82.979	ENSPPYG00000025874	SNRPD1	79	82.979	Pongo_abelii
FBgn0261933	SmD1	76	82.979	ENSPCOG00000013327	SNRPD1	79	82.979	Propithecus_coquereli
FBgn0261933	SmD1	76	82.979	ENSPVAG00000005511	SNRPD1	63	82.979	Pteropus_vampyrus
FBgn0261933	SmD1	76	79.787	ENSPNAG00000017824	snrpd1	79	79.787	Pygocentrus_nattereri
FBgn0261933	SmD1	76	82.979	ENSRNOG00000013714	Snrpd1	79	82.979	Rattus_norvegicus
FBgn0261933	SmD1	76	82.979	ENSRBIG00000022996	SNRPD1	79	82.979	Rhinopithecus_bieti
FBgn0261933	SmD1	76	82.979	ENSRROG00000027640	SNRPD1	79	82.979	Rhinopithecus_roxellana
FBgn0261933	SmD1	76	82.979	ENSSBOG00000020998	SNRPD1	79	82.979	Saimiri_boliviensis_boliviensis
FBgn0261933	SmD1	76	82.979	ENSSHAG00000011791	SNRPD1	79	82.979	Sarcophilus_harrisii
FBgn0261933	SmD1	76	79.787	ENSSFOG00015008809	-	79	79.787	Scleropages_formosus
FBgn0261933	SmD1	77	79.167	ENSSFOG00015022253	-	79	79.787	Scleropages_formosus
FBgn0261933	SmD1	76	80.851	ENSSMAG00000008765	snrpd1	79	80.851	Scophthalmus_maximus
FBgn0261933	SmD1	73	78.889	ENSSDUG00000010521	snrpd1	76	78.889	Seriola_dumerili
FBgn0261933	SmD1	76	80.851	ENSSLDG00000011858	snrpd1	79	80.851	Seriola_lalandi_dorsalis
FBgn0261933	SmD1	54	89.552	ENSSARG00000004271	SNRPD1	100	89.552	Sorex_araneus
FBgn0261933	SmD1	76	82.979	ENSSPUG00000002824	SNRPD1	79	82.979	Sphenodon_punctatus
FBgn0261933	SmD1	70	79.310	ENSSPAG00000015229	snrpd1	78	79.310	Stegastes_partitus
FBgn0261933	SmD1	76	82.979	ENSSSCG00000003701	SNRPD1	79	82.979	Sus_scrofa
FBgn0261933	SmD1	73	82.222	ENSTGUG00000005095	SNRPD1	76	82.222	Taeniopygia_guttata
FBgn0261933	SmD1	70	79.310	ENSTRUG00000008977	snrpd1	78	79.310	Takifugu_rubripes
FBgn0261933	SmD1	63	71.795	ENSTNIG00000001224	snrpd1	75	71.795	Tetraodon_nigroviridis
FBgn0261933	SmD1	51	76.190	ENSTBEG00000013776	SNRPD1	72	76.190	Tupaia_belangeri
FBgn0261933	SmD1	73	82.222	ENSTTRG00000002654	SNRPD1	78	82.222	Tursiops_truncatus
FBgn0261933	SmD1	77	82.292	ENSUAMG00000013431	SNRPD1	94	82.979	Ursus_americanus
FBgn0261933	SmD1	76	82.979	ENSUMAG00000019740	SNRPD1	79	82.979	Ursus_maritimus
FBgn0261933	SmD1	76	82.979	ENSVPAG00000010056	SNRPD1	63	82.979	Vicugna_pacos
FBgn0261933	SmD1	70	81.609	ENSVVUG00000004009	SNRPD1	78	81.609	Vulpes_vulpes
FBgn0261933	SmD1	76	81.915	ENSXETG00000027354	snrpd1	79	81.915	Xenopus_tropicalis
FBgn0261933	SmD1	76	80.851	ENSXCOG00000020108	snrpd1	79	80.851	Xiphophorus_couchianus
FBgn0261933	SmD1	76	80.851	ENSXMAG00000003368	snrpd1	79	80.851	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000243	commitment complex	21873635.	IBA	Component
GO:0000387	spliceosomal snRNP assembly	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0005634	nucleus	25294944.	HDA	Component
GO:0005634	nucleus	18369183.	IDA	Component
GO:0005681	spliceosomal complex	10908584.	ISS	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005687	U4 snRNP	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005829	cytosol	25294944.	HDA	Component
GO:0030532	small nuclear ribonucleoprotein complex	10908584.	ISS	Component
GO:0034715	pICln-Sm protein complex	21873635.	IBA	Component
GO:0034719	SMN-Sm protein complex	21873635.	IBA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component