EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0262519 (Gene tree)
Gene ID: 40170
Gene Symbol: Mi-2
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 28165 bases
Position: chr3L:19882051-19910215
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0099808	ResIII	PF04851.15	1.7e-09	1	1
FBpp0074688	ResIII	PF04851.15	1.7e-09	1	1
FBpp0291256	ResIII	PF04851.15	1.7e-09	1	1
FBpp0304462	ResIII	PF04851.15	1.7e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0074919	-	6416	-	FBpp0074688	1982 (aa)	-	O97159
FBtr0302046	-	6483	-	FBpp0291256	1982 (aa)	-	O97159
FBtr0332152	-	6424	-	FBpp0304462	1973 (aa)	-	O97159
FBtr0100394	-	6486	-	FBpp0099808	1983 (aa)	-	Q59E34

Gene Model

Click here to download FBgn0262519's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0262519's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0262519	Mi-2	83	53.600	WBGene00000482	chd-3	91	53.600	Caenorhabditis_elegans
FBgn0262519	Mi-2	70	55.734	WBGene00002637	let-418	88	53.629	Caenorhabditis_elegans

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	19165147.	IDA	Process
GO:0003677	DNA binding	12006495.18250149.	IDA	Function
GO:0003682	chromatin binding	19165147.	IDA	Function
GO:0004386	helicase activity	10908586.	ISS	Function
GO:0005515	protein binding	15695365.19165147.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	25294944.	HDA	Component
GO:0005634	nucleus	18250149.19165147.28522526.	IDA	Component
GO:0005700	polytene chromosome	11743021.20733004.	IDA	Component
GO:0005829	cytosol	25294944.	HDA	Component
GO:0006357	regulation of transcription by RNA polymerase II	19995906.	IMP	Process
GO:0007283	spermatogenesis	23409089.	IMP	Process
GO:0008270	zinc ion binding	21912646.	ISM	Function
GO:0016581	NuRD complex	10904264.	ISS	Component
GO:0016581	NuRD complex	11743021.	TAS	Component
GO:0016887	ATPase activity	12006495.16223721.	IDA	Function
GO:0030261	chromosome condensation	25501812.	IMP	Process
GO:0031491	nucleosome binding	16223721.18250149.	IDA	Function
GO:0035327	transcriptionally active chromatin	18250149.	IDA	Component
GO:0042766	nucleosome mobilization	12006495.16223721.18250149.	IDA	Process
GO:0043044	ATP-dependent chromatin remodeling	22912596.	IMP	Process
GO:0045892	negative regulation of transcription, DNA-templated	9836641.	IGI	Process
GO:0051276	chromosome organization	22912596.	IMP	Process
GO:0051312	chromosome decondensation	22912596.	IMP	Process
GO:0070615	nucleosome-dependent ATPase activity	18250149.	IDA	Function
GO:0070615	nucleosome-dependent ATPase activity	19165147.	IDA	Function
GO:0071923	negative regulation of cohesin loading	22912596.	IMP	Process